Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 2633.2 1319 100.0
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 2418.3 1319 92.3
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 2328.5 1319 88.6
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 2319.7 1319 88.0
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 2094.3 1320 80.5
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 2067.4 1334 78.2
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 2063.5 1335 78.1
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 2062.3 1325 79.0
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 2053.1 1326 79.3
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 2049.6 1327 78.7
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 2047.3 1327 78.4
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 2042.3 1325 78.8
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1760.3 1329 66.8
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1741.1 1327 66.2
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1721.4 1329 65.2
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1673.7 1335 63.4
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1664.8 1332 63.1
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1664.0 1326 64.9
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1662.1 1336 63.8
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1657.9 1331 63.3
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1644.8 1326 64.5
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1644.4 1336 63.0
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1644.4 1330 63.4
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1638.6 1327 63.9
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1635.9 1315 62.7
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1634.8 1327 63.8
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1631.3 1325 63.9
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1627.1 1327 63.3
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1625.1 1396 59.6
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1619.0 1327 63.3
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1612.8 1342 62.4
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1612.4 1329 62.5
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1603.6 1336 60.8
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1590.9 1332 62.6
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1587.4 1287 62.6
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1579.7 1333 60.5
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1564.3 1329 61.2
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1559.7 1333 61.2
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1557.0 1338 58.5
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1553.9 1216 64.8
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1553.5 1216 65.0
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1540.4 1485 55.2
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1537.7 1332 60.4
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1537.7 1372 59.0
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1532.3 1335 59.3
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1530.4 1335 58.4
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1529.6 1345 58.7
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1526.1 1335 59.6
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1526.1 1240 61.2
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1525.0 1338 59.4
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1523.1 1336 59.1
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1521.1 1337 58.3
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1519.2 1335 58.1
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1505.7 1338 57.6
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1501.9 1337 57.6
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1499.6 1329 57.7
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1491.9 1340 57.8
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1484.2 1337 57.8
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1483.4 1338 57.6
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1473.4 1332 57.0
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1472.6 1325 56.8
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1469.1 1331 56.9
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1468.0 1325 56.5
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1467.6 1330 56.8
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1466.4 1340 55.7
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1459.1 1312 56.6
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1453.3 1341 55.6
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1449.1 1330 56.6
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1448.7 1334 56.1
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1447.6 1335 57.0
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1446.8 1331 56.2
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1424.1 1327 56.0
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1407.1 1328 56.5
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1404.0 1329 56.1
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1395.9 1325 55.3
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1371.7 1334 55.2
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1367.4 1307 55.4
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1364.7 1325 55.2
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1364.4 1332 55.4
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1362.8 1325 55.5
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1355.5 1324 53.9
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1352.4 1332 55.1
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1352.4 1332 55.1
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1350.1 1319 54.9
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1337.0 1253 54.9
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1334.7 1278 53.9
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1322.0 1336 52.1
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1230.7 1318 50.2
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1223.8 1097 58.3
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1198.0 1318 48.9
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1193.7 1320 50.1
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1178.3 1345 48.5
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1176.8 1313 48.4
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1167.5 987 61.0
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1158.3 898 63.4
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1152.1 986 60.3
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 6.3e-311 1071.2 1235 48.6
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 6.9e-310 1067.8 862 62.3
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 1.4e-278 963.8 1294 45.4
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 3.8e-276 955.7 1345 41.0
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 1.2e-237 827.8 1292 38.9
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 3.2e-235 819.7 1124 41.6
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 7.2e-227 792.0 1306 37.3
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 5.2e-225 785.8 1330 36.4
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 1.4e-217 761.1 915 46.2
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 1.1e-161 575.5 583 55.6
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 1.8e-161 574.7 594 51.2
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 4.2e-158 563.5 483 59.8
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 2.8e-122 444.5 1145 29.6
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 1.4e-108 399.1 291 65.3
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 1.7e-95 355.5 326 57.1
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 2.3e-87 328.6 320 50.9
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 5.0e-87 327.4 1070 27.9
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 4.7e-85 320.9 357 50.1
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 1.2e-83 316.2 292 61.0
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 3.9e-55 221.5 183 59.6
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 8.7e-55 220.3 311 41.8
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 2.6e-51 208.8 213 50.7
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.4e-49 203.0 186 55.9
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 4.3e-46 191.4 302 40.4
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 8.7e-39 167.2 119 67.2
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.9e-38 166.0 150 52.7
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 3.4e-27 128.6 129 55.0
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 1.5e-22 113.2 665 24.2
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 1.5e-22 113.2 121 47.1
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 3.8e-18 98.6 75 68.0
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 1.2e-16 93.6 87 44.8
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 1.4e-12 80.1 102 42.2
BolC7t41437H Brassica oleracea HOM05D005691 ORTHO05D027513 4.7e-08 65.1 131 32.8
Hma1.2p1_0133F.1_g061360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 2.3e-07 62.8 65 50.8
SEGI_34592 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 9.7e-06 57.4 45 60.0


User provided reference genes

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