Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 8.4e-207 723.4 350 100.0
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 2.0e-192 675.6 339 95.3
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 2.5e-187 658.7 351 90.0
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 8.2e-186 653.7 351 89.5
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 7.6e-176 620.5 351 84.3
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 6.7e-172 607.4 352 82.7
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 9.7e-171 603.6 352 81.5
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 9.1e-169 597.0 350 81.7
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 5.5e-166 587.8 352 79.3
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 4.7e-165 584.7 362 78.7
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 1.7e-159 566.2 351 76.6
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 6.5e-159 564.3 351 76.9
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 1.2e-147 526.9 349 71.9
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 4.2e-142 508.4 361 68.4
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 9.4e-142 507.3 355 68.7
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 1.0e-140 503.8 351 69.5
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 3.0e-140 502.3 356 66.0
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 8.8e-140 500.7 357 66.9
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 1.5e-139 500.0 358 66.8
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 2.0e-139 499.6 355 66.5
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 1.7e-138 496.5 360 67.5
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 2.2e-138 496.1 357 64.7
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 6.3e-138 494.6 353 67.1
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 1.1e-137 493.8 340 68.2
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 3.1e-137 492.3 352 67.3
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 1.3e-135 486.9 362 64.9
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 3.8e-135 485.3 367 65.1
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 5.0e-135 485.0 362 64.9
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 8.6e-135 484.2 360 63.3
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 2.5e-134 482.6 318 70.8
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 5.5e-134 481.5 357 63.9
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 7.2e-134 481.1 361 64.0
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 1.2e-133 480.3 370 63.5
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 1.2e-133 480.3 357 64.1
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 4.7e-133 478.4 366 63.1
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 2.3e-132 476.1 354 65.5
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 8.9e-132 474.2 356 63.5
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.0e-131 473.0 365 64.7
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 2.0e-131 473.0 356 65.7
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 2.0e-131 473.0 339 64.9
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 2.6e-131 472.6 360 65.6
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 5.7e-131 471.5 362 64.6
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 9.8e-131 470.7 355 65.4
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 1.7e-130 469.9 359 62.4
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.7e-130 469.9 357 65.0
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 3.1e-129 465.7 341 63.6
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 5.4e-129 464.9 356 60.7
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 5.4e-129 464.9 357 61.1
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 3.5e-128 462.2 366 60.1
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 5.9e-128 461.5 342 64.6
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 7.8e-128 461.1 354 62.7
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 3.8e-127 458.8 366 60.1
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 6.6e-127 458.0 336 64.0
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 1.1e-126 457.2 339 61.9
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 1.9e-126 456.4 343 61.8
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 5.6e-126 454.9 340 61.2
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 5.6e-126 454.9 350 63.7
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 1.6e-125 453.4 340 62.6
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 2.8e-125 452.6 340 62.4
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 2.8e-125 452.6 359 62.1
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 4.7e-125 451.8 340 61.5
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 1.8e-124 449.9 344 62.8
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 3.0e-124 449.1 341 61.6
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 5.2e-124 448.4 340 61.2
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 5.2e-124 448.4 340 61.2
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 6.8e-124 448.0 405 54.3
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 8.9e-124 447.6 483 50.3
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 1.2e-123 447.2 342 61.4
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 7.5e-123 444.5 339 61.1
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 1.3e-122 443.7 429 52.4
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 2.9e-122 442.6 343 60.9
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.9e-122 442.6 355 61.4
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 3.7e-122 442.2 350 61.4
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 3.7e-122 442.2 350 61.4
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 4.9e-122 441.8 338 62.1
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 6.4e-122 441.4 345 60.3
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 1.1e-121 440.7 355 59.2
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 1.9e-121 439.9 353 58.1
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 4.1e-121 438.7 338 61.5
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 4.1e-121 438.7 357 60.5
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 1.2e-120 437.2 338 61.2
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 2.7e-120 436.0 346 60.7
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 6.0e-120 434.9 357 61.1
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 7.8e-120 434.5 362 59.4
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 7.8e-120 434.5 340 62.6
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 1.0e-119 434.1 343 60.1
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 1.2e-117 427.2 353 59.5
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 1.4e-116 423.7 361 57.9
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 1.4e-116 423.7 320 64.1
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 1.7e-114 416.8 426 51.4
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 2.9e-114 416.0 383 54.3
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 3.5e-112 409.1 353 56.7
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 3.0e-111 406.0 301 64.8
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 1.1e-110 404.1 341 58.1
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 5.6e-110 401.7 270 68.5
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 1.2e-109 400.6 370 55.9
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 1.2e-109 400.6 271 66.8
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 2.0e-107 393.3 357 53.5
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 7.5e-107 391.3 356 55.1
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 7.8e-104 381.3 356 50.0
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 3.0e-103 379.4 383 49.3
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 2.6e-99 366.3 354 53.7
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 4.4e-99 365.5 357 53.2
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.6e-96 357.1 244 69.3
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 8.7e-95 351.3 319 56.7
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 2.8e-93 346.3 354 51.4
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 3.4e-91 339.3 423 40.9
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 1.9e-89 333.6 205 75.6
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 2.1e-88 330.1 291 56.7
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 3.1e-84 316.2 209 72.2
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 1.0e-79 301.2 410 42.0
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 2.3e-79 300.1 345 47.0
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 3.0e-79 299.7 293 51.2
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 1.8e-76 290.4 155 81.9
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 2.4e-76 290.0 376 41.8
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 2.0e-75 287.0 345 42.3
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 4.8e-69 265.8 224 59.8
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 3.5e-64 249.6 134 84.3
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 1.5e-62 244.2 127 85.0
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 3.4e-51 206.5 255 43.5
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 3.4e-51 206.5 255 43.5
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 2.8e-45 186.8 190 48.9
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 2.8e-45 186.8 190 48.9
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 1.1e-41 174.9 127 58.3
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 1.2e-40 171.4 153 53.6
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 6.7e-39 165.6 193 46.1
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 2.2e-37 160.6 83 86.7
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 2.2e-29 134.0 77 80.5
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 4.2e-25 119.8 112 53.6
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 8.8e-23 112.1 132 44.7
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 1.1e-20 105.1 199 33.7
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.6e-16 91.3 121 42.1
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 3.6e-08 63.5 109 39.4


User provided reference genes

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