Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 3.1e-141 505.4 302 100.0
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 5.5e-138 494.6 302 98.3
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 2.9e-131 472.2 302 86.8
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 3.8e-131 471.9 302 87.7
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 1.2e-129 466.8 302 85.8
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 2.8e-126 455.7 304 78.9
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 6.9e-125 451.1 300 82.0
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 5.9e-124 448.0 302 81.1
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.3e-123 446.8 304 80.3
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 1.4e-122 443.4 307 77.5
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 3.2e-122 442.2 302 79.5
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 3.2e-122 442.2 302 79.5
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 5.5e-122 441.4 307 80.1
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 5.5e-122 441.4 304 78.9
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 9.4e-122 440.7 304 75.7
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 1.6e-121 439.9 304 76.3
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 4.6e-121 438.3 302 78.5
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 4.6e-121 438.3 302 77.5
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 6.1e-121 438.0 304 81.9
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 6.1e-121 438.0 304 78.0
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 7.9e-121 437.6 302 78.5
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 1.4e-120 436.8 303 82.2
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 1.5e-119 433.3 305 75.4
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 2.0e-119 433.0 302 77.5
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 2.0e-119 433.0 304 78.9
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 2.5e-119 432.6 304 76.6
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 4.3e-119 431.8 304 78.3
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 7.4e-119 431.0 304 76.3
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 9.7e-119 430.6 303 78.9
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 9.7e-119 430.6 306 78.1
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 9.7e-119 430.6 306 78.1
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 9.7e-119 430.6 306 78.1
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 9.7e-119 430.6 303 76.6
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 2.2e-118 429.5 301 75.4
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 2.8e-118 429.1 302 77.5
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 4.8e-118 428.3 304 76.0
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 4.8e-118 428.3 304 76.0
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 4.8e-118 428.3 304 78.0
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 1.1e-117 427.2 302 76.8
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 1.1e-117 427.2 306 77.1
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 1.1e-117 427.2 304 76.3
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 1.1e-117 427.2 302 77.2
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 1.1e-117 427.2 303 80.5
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.8e-117 426.4 304 75.7
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.4e-117 426.0 302 79.5
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 2.4e-117 426.0 303 80.9
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 3.1e-117 425.6 302 78.8
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 4.1e-117 425.2 305 79.3
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 6.9e-117 424.5 300 76.7
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 9.1e-117 424.1 300 79.3
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 1.5e-116 423.3 302 73.5
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 2.0e-116 422.9 302 72.5
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 2.6e-116 422.5 302 78.1
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 7.7e-116 421.0 303 74.3
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 1.3e-115 420.2 300 76.0
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 1.3e-115 420.2 305 75.7
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 2.2e-115 419.5 303 84.8
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 2.9e-115 419.1 305 74.8
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 3.8e-115 418.7 302 73.8
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 6.5e-115 417.9 302 76.8
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 8.5e-115 417.5 302 71.9
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 8.5e-115 417.5 301 79.1
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 8.5e-115 417.5 302 77.2
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 1.4e-114 416.8 294 75.5
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 1.9e-114 416.4 302 77.5
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 3.2e-114 415.6 304 75.3
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 3.2e-114 415.6 306 79.4
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 3.2e-114 415.6 302 71.9
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 4.2e-114 415.2 302 75.5
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 5.5e-114 414.8 302 72.2
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 5.5e-114 414.8 302 73.5
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 7.2e-114 414.5 302 78.8
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 1.2e-113 413.7 303 82.2
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 2.1e-113 412.9 283 76.3
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 4.7e-113 411.8 302 72.2
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 1.8e-112 409.8 304 74.0
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 3.0e-112 409.1 302 69.9
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 3.0e-112 409.1 302 71.5
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 3.9e-112 408.7 294 73.1
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 6.7e-112 407.9 305 69.5
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 6.7e-112 407.9 304 74.0
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 6.7e-112 407.9 304 74.0
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 8.8e-112 407.5 302 76.5
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 8.8e-112 407.5 303 75.9
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 8.8e-112 407.5 303 73.9
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 2.6e-111 406.0 303 72.9
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 4.4e-111 405.2 303 75.6
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 7.4e-111 404.4 304 73.7
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 9.7e-111 404.1 303 75.2
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 1.3e-110 403.7 302 74.5
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.7e-110 403.3 302 75.2
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 2.2e-110 402.9 302 74.2
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 2.2e-110 402.9 302 76.5
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 2.8e-110 402.5 302 73.2
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 2.8e-110 402.5 302 70.5
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 4.8e-110 401.7 302 71.2
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 4.8e-110 401.7 302 75.8
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 8.2e-110 401.0 302 73.5
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 1.4e-109 400.2 301 68.4
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 9.1e-109 397.5 302 75.8
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 9.1e-109 397.5 302 75.8
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 9.1e-109 397.5 302 75.8
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.2e-108 397.1 302 72.8
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 2.0e-108 396.4 302 74.2
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 5.9e-108 394.8 302 70.5
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 2.2e-107 392.9 306 74.2
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 2.2e-107 392.9 303 67.3
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 8.2e-102 374.4 300 72.7
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 7.0e-101 371.3 280 74.3
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 2.0e-100 369.8 303 65.0
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 5.9e-100 368.2 312 68.9
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 6.1e-97 358.2 302 63.6
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 1.3e-94 350.5 301 64.1
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 5.4e-93 345.1 304 68.8
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 2.5e-90 336.3 291 64.6
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 1.2e-89 334.0 302 59.6
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 1.8e-85 320.1 303 55.8
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 4.5e-84 315.5 323 54.8
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 1.0e-80 304.3 174 83.3
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 3.5e-76 289.3 303 53.5
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.9e-74 283.5 252 68.3
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 3.6e-73 279.3 298 53.0
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 4.7e-73 278.9 252 62.7
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.4e-72 277.3 302 54.6
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 7.5e-71 271.6 302 56.3
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 9.5e-66 254.6 191 82.2
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 6.8e-64 248.4 134 91.0
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 3.0e-59 233.0 301 46.8
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.6e-52 210.7 197 60.9
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 2.5e-50 203.4 204 63.7
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 6.8e-48 195.3 271 50.2
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 6.4e-46 188.7 296 44.6
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 2.7e-44 183.3 193 58.0
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 1.9e-42 177.2 311 40.8
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 4.0e-40 169.5 193 56.5
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.4e-39 166.4 164 63.4
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 9.3e-37 158.3 110 75.5
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 1.2e-36 157.9 178 50.0
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 3.0e-35 153.3 104 71.2
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 1.1e-34 151.4 174 53.4
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 5.6e-34 149.1 229 48.0
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 1.4e-29 134.4 83 74.7
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 3.2e-29 133.3 110 86.4
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 2.6e-23 113.6 211 39.8
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 3.2e-21 106.7 58 82.8
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 7.1e-21 105.5 96 72.9
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 9.3e-21 105.1 58 81.0
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 2.7e-20 103.6 302 36.4
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 7.9e-20 102.1 61 77.0
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 1.3e-19 101.3 115 67.8
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 3.9e-19 99.8 302 35.8
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 1.6e-17 94.4 82 58.5
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 2.4e-16 90.5 97 72.2
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 1.7e-14 84.3 154 44.8
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 5.1e-11 72.8 55 74.5
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 8.5e-06 55.5 43 65.1


User provided reference genes

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