Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 4.3e-64 247.7 112 100.0
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 1.1e-51 206.5 110 81.8
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 9.3e-51 203.4 110 81.8
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 2.4e-46 188.7 112 72.3
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 2.0e-45 185.7 112 74.1
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 2.0e-45 185.7 112 74.1
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 2.6e-45 185.3 112 69.6
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 4.5e-45 184.5 112 72.3
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 6.5e-44 180.6 112 70.5
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 8.5e-44 180.3 112 72.3
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 1.1e-43 179.9 112 70.5
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 9.3e-43 176.8 112 72.3
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 1.6e-42 176.0 112 70.5
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 2.7e-42 175.3 112 69.6
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 4.6e-42 174.5 112 69.6
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 4.6e-42 174.5 112 69.6
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 7.9e-42 173.7 110 68.2
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.0e-41 173.3 113 65.5
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.0e-41 173.3 113 65.5
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.0e-41 173.3 113 65.5
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.0e-41 173.3 113 65.5
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 5.1e-41 171.0 113 65.5
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 8.7e-41 170.2 113 66.4
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 1.5e-40 169.5 112 67.9
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 1.5e-40 169.5 112 67.9
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 2.5e-40 168.7 112 67.0
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 3.3e-40 168.3 113 66.4
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 3.3e-40 168.3 112 66.1
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 4.3e-40 167.9 113 66.4
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 4.3e-40 167.9 113 65.5
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.3e-39 166.4 113 65.5
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.3e-39 166.4 113 65.5
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 1.7e-39 166.0 112 64.3
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 2.2e-39 165.6 110 64.5
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 2.2e-39 165.6 113 65.5
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 6.3e-39 164.1 113 65.5
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 1.4e-38 162.9 97 71.1
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 2.4e-38 162.2 112 60.7
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 3.1e-38 161.8 110 65.5
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 4.1e-38 161.4 113 65.5
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 4.1e-38 161.4 112 61.6
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 4.1e-38 161.4 112 61.6
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 5.3e-38 161.0 113 63.7
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 5.3e-38 161.0 113 68.1
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 9.1e-38 160.2 113 65.5
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 1.2e-37 159.8 113 67.3
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 1.5e-37 159.5 113 66.4
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 1.5e-37 159.5 112 62.5
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 3.4e-37 158.3 112 59.8
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 4.5e-37 157.9 115 63.5
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 4.5e-37 157.9 112 61.6
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 5.9e-37 157.5 110 64.5
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 1.7e-36 156.0 112 62.5
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 3.8e-36 154.8 112 59.8
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 5.0e-36 154.5 113 61.9
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 5.0e-36 154.5 110 62.7
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 6.5e-36 154.1 113 62.8
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 5.5e-35 151.0 113 60.2
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 9.4e-35 150.2 108 64.8
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 1.2e-34 149.8 95 70.5
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 2.1e-34 149.1 108 63.0
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 2.1e-34 149.1 108 63.0
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 2.1e-34 149.1 108 63.0
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 2.1e-34 149.1 108 63.0
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 2.1e-34 149.1 108 63.0
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 2.1e-34 149.1 108 63.0
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 2.1e-34 149.1 108 63.0
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 2.1e-34 149.1 102 60.8
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 2.7e-34 148.7 108 63.9
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 7.9e-34 147.1 114 62.3
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 5.1e-33 144.4 116 55.2
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 7.4e-32 140.6 112 59.8
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 7.4e-32 140.6 108 60.2
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 7.4e-32 140.6 112 58.0
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 9.7e-32 140.2 115 55.7
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 9.7e-32 140.2 112 54.5
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 1.3e-31 139.8 112 63.4
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 2.2e-31 139.0 104 64.4
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 1.4e-30 136.3 86 66.3
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 1.8e-30 136.0 112 58.0
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 3.1e-30 135.2 113 56.6
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 4.1e-30 134.8 112 57.1
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 5.3e-30 134.4 112 57.1
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 6.9e-30 134.0 112 54.5
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 1.2e-29 133.3 112 53.6
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 1.2e-29 133.3 112 53.6
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 1.2e-29 133.3 112 53.6
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 1.2e-29 133.3 112 53.6
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 1.2e-29 133.3 112 53.6
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 1.2e-29 133.3 112 53.6
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 1.2e-29 133.3 112 53.6
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 1.2e-29 133.3 112 53.6
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 1.5e-29 132.9 112 53.6
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 2.0e-29 132.5 112 57.1
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 2.0e-29 132.5 112 57.1
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 2.0e-29 132.5 112 57.1
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 2.0e-29 132.5 113 58.4
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 2.0e-29 132.5 113 58.4
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 2.0e-29 132.5 113 58.4
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 2.0e-29 132.5 113 58.4
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 5.9e-29 131.0 113 55.8
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 5.9e-29 131.0 113 58.4
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 7.7e-29 130.6 112 54.5
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 1.0e-28 130.2 112 52.7
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 1.7e-28 129.4 112 53.6
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 5.0e-28 127.9 113 55.8
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 1.6e-26 122.9 139 49.6
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 6.1e-26 120.9 85 58.8
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 8.0e-26 120.6 113 47.8
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 5.7e-24 114.4 93 59.1
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 1.3e-23 113.2 112 47.3
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 1.3e-23 113.2 109 48.6
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 1.7e-23 112.8 113 52.2
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 1.7e-23 112.8 111 47.7
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 4.8e-23 111.3 113 50.4
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 7.0e-22 107.5 111 45.9
Nitab4.5_0009816g0020 Nicotiana tabacum HOM05D006029 ORTHO05D007439 7.0e-22 107.5 74 59.5
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 9.1e-22 107.1 70 68.6
QL08p046069 Quercus lobata HOM05D006029 ORTHO05D007439 9.1e-22 107.1 68 66.2
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 2.0e-21 105.9 74 67.6
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 1.6e-18 96.3 79 55.7
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 2.7e-18 95.5 113 44.2
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 1.0e-17 93.6 89 47.2
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 1.0e-17 93.6 111 41.4
Lsat_1_v5_gn_6_81300 Lactuca sativa HOM05D006029 ORTHO05D007439 5.2e-17 91.3 68 66.2
Cc08_g08090 Coffea canephora HOM05D006029 ORTHO05D007439 3.3e-16 88.6 55 69.1
Ca_09543_v3 Cicer arietinum L. HOM05D006029 ORTHO05D007439 4.4e-16 88.2 68 64.7
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 1.1e-14 83.6 71 54.9
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 1.8e-14 82.8 113 41.6
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 2.2e-12 75.9 71 45.1
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 1.5e-08 63.2 65 44.6
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 9.8e-08 60.5 120 32.5
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 1.7e-07 59.7 118 31.4
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 3.7e-07 58.5 114 34.2
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 6.3e-07 57.8 114 33.3
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 1.4e-06 56.6 115 33.9
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 7.0e-06 54.3 124 35.5
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 9.1e-06 53.9 117 35.9


User provided reference genes

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