Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 4.9e-158 561.2 312 100.0
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 7.9e-132 474.2 314 80.9
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 1.0e-115 420.6 314 76.4
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 4.8e-113 411.8 320 73.4
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 2.4e-112 409.5 320 73.1
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 1.1e-109 400.6 315 73.3
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 7.2e-109 397.9 277 75.8
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 9.4e-109 397.5 280 74.3
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 1.5e-101 373.6 285 77.9
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 3.6e-100 369.0 283 75.6
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 6.1e-100 368.2 282 74.1
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 1.4e-99 367.1 266 72.6
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 1.4e-99 367.1 282 73.8
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 8.8e-99 364.4 268 73.9
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 3.3e-98 362.5 283 76.3
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 7.5e-98 361.3 296 69.9
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 7.5e-98 361.3 314 69.7
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 1.3e-97 360.5 308 69.5
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.3e-97 360.5 302 68.5
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 1.3e-97 360.5 311 68.5
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 1.3e-97 360.5 282 67.7
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 1.7e-97 360.1 310 69.4
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 2.2e-97 359.8 314 66.9
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 2.8e-97 359.4 299 74.2
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 2.8e-97 359.4 307 68.7
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 2.8e-97 359.4 307 68.1
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 4.8e-97 358.6 314 67.2
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 4.8e-97 358.6 279 73.1
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 4.8e-97 358.6 309 66.3
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 6.3e-97 358.2 313 69.0
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 1.1e-96 357.5 262 74.8
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 1.4e-96 357.1 281 69.8
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 1.8e-96 356.7 228 80.7
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 3.1e-96 355.9 268 73.1
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 4.1e-96 355.5 304 67.1
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 4.1e-96 355.5 311 64.6
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 7.0e-96 354.8 310 67.1
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 9.1e-96 354.4 303 68.0
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 1.2e-95 354.0 268 73.1
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 2.0e-95 353.2 278 70.1
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 2.0e-95 353.2 306 68.3
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 2.0e-95 353.2 310 67.1
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 2.7e-95 352.8 318 65.4
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 3.5e-95 352.4 268 72.4
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 4.5e-95 352.1 312 65.4
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 5.9e-95 351.7 298 69.1
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 1.7e-94 350.1 291 65.3
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 2.2e-94 349.7 313 66.8
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 3.8e-94 349.0 276 75.4
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 5.0e-94 348.6 275 69.1
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 3.2e-93 345.9 307 66.1
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 5.5e-93 345.1 266 68.0
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 3.6e-92 342.4 311 64.6
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 3.6e-92 342.4 282 69.9
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 1.0e-91 340.9 310 64.8
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 1.8e-91 340.1 307 65.8
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 3.0e-91 339.3 316 63.0
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 3.0e-91 339.3 283 64.7
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 3.0e-91 339.3 316 64.2
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 5.2e-91 338.6 252 76.2
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 8.8e-91 337.8 268 69.8
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 1.2e-90 337.4 296 64.5
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 1.5e-90 337.0 312 64.4
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 1.5e-90 337.0 280 68.6
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 2.6e-90 336.3 269 71.4
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 2.6e-90 336.3 317 59.6
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 3.4e-90 335.9 299 65.2
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 3.4e-90 335.9 278 67.3
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 5.7e-90 335.1 284 65.1
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 9.8e-90 334.3 285 62.5
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 9.8e-90 334.3 285 62.5
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 1.3e-89 334.0 286 62.9
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 3.7e-89 332.4 272 71.0
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 8.3e-89 331.3 252 74.2
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 5.4e-88 328.6 299 59.9
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 1.0e-86 324.3 299 61.5
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 2.9e-86 322.8 330 60.6
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 2.9e-86 322.8 228 75.0
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 8.5e-86 321.2 260 71.2
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 8.5e-86 321.2 330 60.3
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 4.2e-85 318.9 268 64.6
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 7.2e-85 318.2 300 59.7
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 1.6e-84 317.0 315 60.3
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 2.8e-84 316.2 287 61.0
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 6.1e-84 315.1 260 66.5
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.4e-83 313.9 250 66.4
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 3.4e-82 309.3 262 65.3
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 4.4e-82 308.9 400 49.2
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 7.5e-82 308.1 228 71.9
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 7.5e-82 308.1 228 71.9
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 3.7e-81 305.8 311 61.1
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 3.7e-81 305.8 278 60.4
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 6.3e-81 305.1 231 69.7
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 3.5e-79 299.3 296 55.7
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 3.5e-79 299.3 247 64.4
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 4.5e-79 298.9 272 63.2
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 6.8e-75 285.0 252 61.1
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 8.9e-75 284.6 188 78.7
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 2.4e-72 276.6 293 56.7
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 7.0e-72 275.0 313 55.9
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 1.0e-70 271.2 306 54.2
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 1.7e-70 270.4 312 56.7
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 1.3e-65 254.2 211 67.8
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 1.5e-61 240.7 278 52.9
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 3.6e-60 236.1 191 71.7
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 2.0e-58 230.3 216 64.4
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 7.5e-58 228.4 261 52.9
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 4.9e-57 225.7 172 77.9
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 4.3e-53 212.6 256 48.0
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 2.8e-52 209.9 223 52.0
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 1.4e-51 207.6 254 52.0
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 2.2e-49 200.3 168 71.4
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 2.7e-39 166.8 196 49.5
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 1.4e-35 154.5 178 44.9
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 5.3e-35 152.5 131 61.8
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 3.2e-32 143.3 123 61.8
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 1.4e-27 127.9 174 47.7
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 5.3e-27 125.9 104 75.0
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 2.2e-25 120.6 99 65.7
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 8.7e-22 108.6 220 36.4
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 1.6e-20 104.4 117 53.0
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 2.8e-20 103.6 78 69.2
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 8.4e-17 92.0 85 60.0
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 6.7e-14 82.4 74 50.0
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 7.4e-13 79.0 69 62.3
Medtr1g072620 Medicago truncatula HOM05D006016 ORTHO05D007553 4.2e-08 63.2 49 69.4
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 3.0e-06 57.0 62 59.7
Lj9C654T3 Lonicera japonica HOM05D006016 ORTHO05D007553 3.0e-06 57.0 46 69.6
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 6.7e-06 55.8 301 27.2


User provided reference genes

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