Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 1.1e-173 613.2 315 100.0
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 3.3e-162 575.1 315 94.3
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 1.6e-153 546.2 315 89.5
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 1.8e-152 542.7 315 88.9
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 6.9e-144 514.2 316 84.2
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 2.6e-143 512.3 315 84.8
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 3.6e-140 501.9 315 82.5
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 3.0e-139 498.8 316 82.3
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 5.2e-139 498.0 315 82.2
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 1.3e-137 493.4 315 82.2
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 2.0e-135 486.1 316 80.1
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 6.1e-132 474.6 315 79.4
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 4.7e-124 448.4 316 75.0
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 8.0e-124 447.6 312 75.6
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 3.0e-123 445.7 319 73.7
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 1.5e-122 443.4 320 72.8
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 2.0e-122 443.0 315 72.7
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 4.4e-122 441.8 320 72.8
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 7.5e-122 441.0 314 73.6
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 7.5e-122 441.0 314 73.6
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 9.8e-122 440.7 320 72.2
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.3e-121 440.3 319 73.7
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 2.2e-121 439.5 320 71.9
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 3.7e-121 438.7 315 72.4
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 4.8e-121 438.3 315 73.3
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 8.3e-121 437.6 315 72.4
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 1.4e-120 436.8 315 72.1
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 2.7e-119 432.6 321 72.6
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 3.5e-119 432.2 316 71.2
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 3.5e-119 432.2 316 71.2
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 4.5e-119 431.8 316 72.5
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 1.0e-118 430.6 317 71.3
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 1.3e-118 430.3 316 73.4
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.9e-118 429.1 315 71.4
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 2.9e-118 429.1 315 71.4
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 3.8e-118 428.7 315 70.5
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 6.5e-118 427.9 315 71.4
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 6.5e-118 427.9 315 69.8
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 6.5e-118 427.9 315 69.8
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 1.1e-117 427.2 320 71.6
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 1.2e-116 423.7 312 70.8
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 1.6e-116 423.3 316 71.2
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 2.8e-116 422.5 318 70.1
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 8.0e-116 421.0 324 68.2
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 8.0e-116 421.0 315 69.8
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 1.0e-115 420.6 315 70.8
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 1.4e-115 420.2 315 67.9
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 3.0e-115 419.1 315 69.8
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 2.0e-114 416.4 316 70.9
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 2.0e-114 416.4 309 69.6
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 2.0e-114 416.4 316 68.7
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 2.6e-114 416.0 317 68.8
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 2.6e-114 416.0 309 69.6
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 3.4e-114 415.6 315 68.9
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 1.3e-113 413.7 315 68.3
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 1.7e-113 413.3 321 67.9
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 1.7e-113 413.3 318 69.2
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 2.2e-113 412.9 317 71.0
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 6.3e-113 411.4 296 73.6
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 2.4e-112 409.5 312 69.6
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.4e-112 409.5 315 68.6
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 5.4e-112 408.3 315 67.0
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 1.6e-111 406.8 315 67.9
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.0e-111 406.4 316 68.0
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 2.7e-111 406.0 351 64.1
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 2.7e-111 406.0 315 69.8
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 1.3e-110 403.7 316 68.4
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 3.8e-110 402.1 315 68.3
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 3.8e-110 402.1 315 68.3
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 8.6e-110 401.0 310 68.7
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 1.9e-109 399.8 352 61.1
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 4.3e-109 398.7 323 64.4
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 7.3e-109 397.9 315 67.6
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 1.2e-108 397.1 331 63.4
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 1.6e-108 396.7 315 66.7
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 1.6e-108 396.7 315 66.7
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 1.6e-108 396.7 319 65.5
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 2.1e-108 396.4 316 66.1
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 3.6e-108 395.6 315 66.7
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 3.6e-108 395.6 315 67.3
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 6.1e-108 394.8 315 66.0
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 8.0e-108 394.4 315 66.3
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 8.0e-108 394.4 315 66.3
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 8.0e-108 394.4 315 66.3
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 1.0e-107 394.0 315 66.0
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 2.3e-107 392.9 275 75.6
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 4.0e-107 392.1 315 66.3
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 1.2e-106 390.6 315 66.7
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 5.7e-106 388.3 317 65.9
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 1.7e-105 386.7 313 65.2
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 2.9e-105 386.0 324 66.4
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 8.3e-105 384.4 318 66.0
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 1.4e-104 383.6 316 66.5
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 4.1e-104 382.1 315 65.4
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 5.9e-103 378.3 316 63.9
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.3e-102 377.1 224 83.9
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 7.3e-101 371.3 316 63.6
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 4.4e-98 362.1 328 60.7
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 2.2e-97 359.8 291 64.9
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 2.9e-97 359.4 339 59.0
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 3.5e-95 352.4 292 64.4
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 6.0e-95 351.7 348 57.2
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 7.8e-95 351.3 274 68.2
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 1.9e-93 346.7 202 85.1
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 9.5e-93 344.4 333 56.8
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 8.1e-92 341.3 212 80.2
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 6.8e-91 338.2 313 58.5
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 5.8e-90 335.1 321 58.3
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 3.2e-88 329.3 203 79.3
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 6.6e-86 321.6 270 63.3
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 1.5e-85 320.5 318 60.7
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 1.9e-85 320.1 320 58.1
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 7.3e-85 318.2 258 67.4
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 9.5e-85 317.8 315 55.6
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 4.7e-84 315.5 315 55.6
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 5.8e-82 308.5 282 60.3
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 4.3e-77 292.4 185 77.8
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 4.9e-65 252.3 204 65.7
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 1.8e-62 243.8 195 70.8
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 3.9e-62 242.7 297 49.5
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 3.3e-61 239.6 413 40.9
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 9.0e-59 231.5 191 68.1
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 6.4e-57 225.3 263 53.2
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 2.7e-55 219.9 376 39.4
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 3.5e-47 193.0 117 82.9
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 3.0e-46 189.9 227 46.7
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 5.3e-43 179.1 237 46.8
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 3.8e-41 172.9 316 40.5
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 1.1e-40 171.4 220 45.5
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 6.1e-39 165.6 95 89.5
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 2.2e-36 157.1 107 72.0
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 2.8e-36 156.8 122 68.9
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 9.1e-35 151.8 207 44.0
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 1.0e-33 148.3 96 81.2
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.4e-32 144.4 93 81.7
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.0e-30 138.3 126 58.7
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.0e-30 138.3 126 58.7
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 5.1e-30 136.0 193 44.0
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 9.7e-29 131.7 277 38.6
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 6.3e-28 129.0 80 80.0
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 2.0e-26 124.0 142 51.4
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 1.1e-24 118.2 131 58.0
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 7.2e-24 115.5 95 65.3
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 1.0e-22 111.7 231 37.7
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 4.7e-15 86.3 112 50.9
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.5e-13 81.3 61 70.5
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 3.2e-08 63.5 43 72.1
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 4.2e-08 63.2 42 66.7
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 9.4e-08 62.0 38 68.4
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 1.6e-07 61.2 62 58.1
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 3.0e-06 57.0 68 44.1


User provided reference genes

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