Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 1.6e-152 543.1 351 100.0
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 5.5e-142 508.1 351 92.3
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 1.4e-140 503.4 351 90.3
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 4.0e-140 501.9 269 97.4
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 4.5e-136 488.4 269 94.8
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 4.5e-136 488.4 269 94.8
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 3.9e-135 485.3 269 92.9
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 8.9e-132 474.2 266 91.4
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 2.0e-131 473.0 270 91.5
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 3.7e-130 468.8 269 91.1
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 3.7e-130 468.8 269 91.1
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 3.7e-130 468.8 265 90.6
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 4.9e-130 468.4 265 90.6
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 6.4e-130 468.0 265 90.6
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 1.4e-129 466.8 352 82.4
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 4.1e-129 465.3 271 91.9
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 2.0e-128 463.0 269 88.5
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 2.0e-128 463.0 269 89.6
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 7.8e-128 461.1 278 88.1
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 7.8e-128 461.1 278 88.1
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 1.7e-127 459.9 268 90.3
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 1.7e-127 459.9 242 93.0
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 1.1e-126 457.2 240 93.8
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 1.2e-125 453.8 278 85.3
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 2.1e-125 453.0 239 92.5
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 1.1e-124 450.7 267 89.5
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 1.1e-124 450.7 237 92.8
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 6.8e-124 448.0 261 85.4
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 1.5e-123 446.8 241 90.9
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.5e-123 446.8 240 91.2
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.5e-123 446.8 240 91.2
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 2.6e-123 446.0 249 89.6
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 3.4e-123 445.7 239 91.6
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 4.4e-123 445.3 239 90.8
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 5.8e-123 444.9 235 93.2
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 7.5e-123 444.5 268 85.4
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 7.5e-123 444.5 254 88.6
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 1.3e-122 443.7 240 91.7
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 1.7e-122 443.4 269 87.4
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 2.2e-122 443.0 262 86.6
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 3.7e-122 442.2 239 90.4
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 6.4e-122 441.4 235 91.9
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 2.4e-121 439.5 261 88.5
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 2.4e-121 439.5 239 90.4
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 3.2e-121 439.1 239 90.8
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 3.2e-121 439.1 261 88.5
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 5.4e-121 438.3 230 92.6
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 5.4e-121 438.3 259 85.7
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 1.2e-120 437.2 228 93.4
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 1.2e-120 437.2 261 88.9
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 3.5e-120 435.6 222 95.5
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 1.3e-119 433.7 242 88.0
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 1.7e-119 433.3 241 90.5
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 2.3e-119 433.0 243 89.7
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 2.3e-119 433.0 243 89.7
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 3.0e-119 432.6 221 95.5
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 3.9e-119 432.2 261 84.3
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 8.6e-119 431.0 242 88.8
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 8.6e-119 431.0 262 87.8
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 1.9e-118 429.9 235 90.2
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 3.3e-118 429.1 242 88.0
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 4.3e-118 428.7 240 87.9
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 7.3e-118 427.9 232 90.5
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 7.3e-118 427.9 222 93.7
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 7.3e-118 427.9 222 93.7
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 9.5e-118 427.6 220 94.5
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 1.2e-117 427.2 244 88.5
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 4.7e-117 425.2 244 87.7
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 4.7e-117 425.2 258 87.6
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 4.7e-117 425.2 258 87.6
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 6.2e-117 424.9 257 84.0
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 6.2e-117 424.9 219 93.2
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 8.1e-117 424.5 268 83.6
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 1.4e-116 423.7 228 90.4
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 2.3e-116 422.9 228 89.9
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 3.1e-116 422.5 220 93.2
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 4.0e-116 422.2 258 87.2
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 8.9e-116 421.0 239 89.1
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 4.4e-115 418.7 235 87.2
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 7.6e-115 417.9 220 92.3
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 9.9e-115 417.5 222 91.4
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 1.1e-113 414.1 228 88.6
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 1.9e-113 413.3 230 88.3
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 5.4e-113 411.8 228 88.2
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 7.8e-112 407.9 242 84.3
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 2.3e-111 406.4 232 85.8
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 3.9e-111 405.6 228 87.3
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 8.6e-111 404.4 228 85.5
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 8.6e-111 404.4 228 85.5
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 1.1e-110 404.1 228 85.5
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 1.1e-110 404.1 228 85.5
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 1.1e-110 404.1 336 69.0
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 1.5e-110 403.7 209 94.3
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 5.6e-110 401.7 241 83.4
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 3.6e-109 399.1 241 85.1
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 1.8e-108 396.7 243 83.1
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.8e-108 396.7 233 85.4
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.3e-106 390.6 242 81.4
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 2.9e-106 389.4 340 65.0
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 1.9e-105 386.7 241 80.9
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 3.2e-105 386.0 265 75.1
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 4.2e-105 385.6 233 80.7
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 7.8e-104 381.3 208 92.3
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 2.1e-101 373.2 243 78.6
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 9.3e-97 357.8 224 85.7
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 8.7e-95 351.3 241 75.5
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 5.3e-92 342.0 181 93.9
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 4.5e-91 339.0 342 56.1
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 1.8e-87 327.0 227 74.9
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 9.6e-86 321.2 240 68.3
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 3.7e-85 319.3 240 67.9
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 3.1e-84 316.2 176 88.6
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 1.3e-82 310.8 570 38.1
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 3.0e-79 299.7 265 66.0
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 4.3e-78 295.8 213 79.8
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 8.2e-77 291.6 219 65.8
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 9.0e-76 288.1 207 73.4
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 3.2e-73 279.6 261 62.8
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 1.0e-71 274.6 189 72.5
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 4.8e-69 265.8 148 87.2
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 2.0e-67 260.4 158 87.3
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 3.0e-63 246.5 132 90.9
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 6.3e-61 238.8 223 58.3
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 2.1e-56 223.8 161 77.6
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 2.7e-56 223.4 195 63.1
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 5.7e-54 215.7 107 98.1
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 2.2e-53 213.8 107 98.1
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 2.8e-53 213.4 130 79.2
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 3.1e-52 209.9 108 94.4
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 4.5e-51 206.1 108 89.8
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 9.4e-49 198.4 107 89.7
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.4e-47 194.5 106 90.6
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 3.0e-47 193.4 102 90.2
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 3.0e-47 193.4 130 83.1
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 2.6e-46 190.3 109 85.3
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 4.1e-44 183.0 92 94.6
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 6.5e-42 175.6 95 90.5
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 5.5e-41 172.6 95 89.5
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 1.6e-40 171.0 119 73.9
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 3.6e-40 169.9 87 92.0
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.8e-39 167.5 135 68.1
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 1.0e-34 151.8 83 86.7
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 6.1e-32 142.5 71 94.4
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 6.1e-32 142.5 71 94.4
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 5.6e-25 119.4 91 70.3
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 8.9e-23 112.1 58 91.4
Haze_13658 Corylus avellana HOM05D004689 ORTHO05D023802 1.2e-19 101.7 62 79.0
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 2.3e-18 97.4 144 49.3
Haze_05345 Corylus avellana HOM05D004689 ORTHO05D023802 1.4e-12 78.2 64 70.3
Haze_08645 Corylus avellana HOM05D004689 ORTHO05D023802 4.6e-11 73.2 61 65.6
Haze_08899 Corylus avellana HOM05D004689 ORTHO05D165887 1.0e-10 72.0 62 59.7
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 1.7e-10 71.2 50 76.0
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 8.6e-10 68.9 38 86.8
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 1.5e-09 68.2 38 84.2
MSTRG.5777 Avicennia marina HOM05D004689 ORTHO05D023802 4.7e-08 63.2 40 77.5
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 8.9e-07 58.9 45 62.2


User provided reference genes

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