Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1471.1 741 100.0
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1430.6 741 96.0
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1393.6 743 93.0
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1356.3 768 87.8
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1353.2 740 90.5
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1352.4 740 90.3
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1352.0 741 90.3
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1349.3 741 89.6
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1348.6 741 90.3
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1346.3 741 90.3
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1346.3 741 90.6
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1339.3 741 89.1
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1330.5 741 87.7
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1330.1 741 87.9
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1330.1 742 88.3
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1328.5 739 88.1
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1328.5 741 87.7
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1326.6 741 87.4
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1325.8 741 87.6
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1325.5 741 87.4
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1325.5 741 87.9
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1325.1 741 88.0
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1324.3 741 87.4
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1323.9 741 87.6
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1323.5 737 89.1
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1320.4 741 87.6
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1320.1 741 87.0
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1319.7 740 88.5
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1319.7 738 88.2
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1319.3 741 86.9
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1317.8 743 88.3
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1317.4 741 86.8
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1316.6 743 87.3
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1316.6 741 87.4
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1316.2 741 87.4
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1315.4 741 86.5
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1314.3 740 86.9
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1313.9 741 86.6
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1313.5 740 86.9
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1313.5 747 86.2
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1313.1 741 86.6
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1313.1 741 86.5
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1312.4 740 87.8
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1312.0 741 87.3
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1311.2 741 86.6
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1311.2 741 86.9
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1310.4 741 86.2
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1309.7 741 87.2
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1308.1 741 86.1
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1307.7 741 86.5
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1306.6 741 86.1
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1306.6 741 87.3
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1306.2 742 86.7
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1306.2 737 88.2
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1305.0 740 86.2
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1302.7 742 87.2
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1302.3 743 87.1
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1302.0 742 86.4
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1301.6 763 85.2
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1301.6 763 85.2
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1301.6 743 86.8
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1300.8 741 86.2
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1299.6 741 86.4
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1299.3 739 86.2
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1298.1 742 86.1
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1297.0 741 85.6
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1296.2 740 85.9
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1294.6 745 85.5
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1294.3 738 85.9
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1293.5 741 85.7
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1293.1 744 86.2
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1292.3 741 85.4
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1289.2 741 85.6
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1288.9 743 86.1
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1288.9 741 85.4
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1288.9 744 85.8
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1288.5 742 85.8
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1286.6 803 80.9
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1286.2 740 85.1
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1286.2 740 85.1
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1285.8 740 84.9
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1285.4 740 85.1
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1285.0 740 85.0
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1285.0 744 85.8
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1284.6 744 85.9
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1284.2 741 85.2
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1283.9 741 86.0
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1283.1 740 85.0
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1283.1 743 85.6
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1282.3 742 85.2
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1281.9 740 85.0
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1281.9 741 84.5
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1281.5 741 84.8
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1280.0 742 84.8
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1274.6 744 84.1
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1274.2 743 84.8
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1273.5 741 84.5
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1270.4 741 84.5
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1268.4 740 84.6
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1267.7 747 83.4
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1263.8 720 86.9
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1261.1 711 87.8
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1260.7 707 87.7
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1260.0 737 84.3
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1258.4 674 92.9
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1258.0 822 77.6
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1253.4 710 87.5
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1253.4 741 82.6
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1250.0 757 81.9
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1246.5 745 82.1
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1239.6 773 80.6
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1226.1 747 81.3
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1224.5 740 82.3
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1223.4 739 81.7
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1212.6 707 84.4
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1208.7 747 80.5
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1203.0 735 82.0
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1191.8 668 87.1
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1183.7 750 80.1
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1145.6 738 77.6
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 0.0e+00 1133.6 687 80.6
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1123.2 616 88.6
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1122.5 746 74.5
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 0.0e+00 1120.9 631 86.4
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1090.9 742 72.6
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1075.8 740 72.0
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 8.0e-300 1033.5 637 79.9
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 2.9e-241 839.0 667 62.7
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 1.8e-230 803.1 699 59.2
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 3.7e-228 795.4 539 77.0
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 1.3e-217 760.4 644 61.8
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 3.5e-210 735.7 523 72.5
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.9e-208 729.9 741 55.2
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 3.6e-207 725.7 739 54.9
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 2.3e-206 723.0 453 80.6
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 1.6e-202 710.3 464 76.9
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 2.4e-134 483.8 263 90.1
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 7.6e-133 478.8 433 61.2
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 1.1e-96 358.6 218 82.1
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 2.6e-80 304.3 578 36.0
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 8.0e-74 282.7 152 88.8
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 4.0e-73 280.4 143 95.1
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 3.0e-60 237.7 170 72.9
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 6.8e-41 173.3 294 37.4
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 3.8e-39 167.5 84 92.9
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 5.1e-36 157.1 98 74.5
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.5e-35 155.6 80 91.2
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 9.6e-27 126.3 80 72.5
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 8.1e-26 123.2 70 82.9
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 1.4e-25 122.5 71 83.1
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 4.6e-21 107.5 69 69.6
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 1.0e-20 106.3 68 75.0
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 4.3e-19 100.9 108 52.8
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 7.4e-19 100.1 73 72.6
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 7.4e-19 100.1 222 34.7
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 1.3e-18 99.4 85 60.0
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 2.1e-18 98.6 75 66.7
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.8e-17 95.5 75 64.0
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 7.6e-16 90.1 69 62.3
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 9.9e-16 89.7 85 55.3
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 4.2e-14 84.3 47 85.1
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 3.5e-13 81.3 71 69.0
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 6.0e-13 80.5 61 63.9
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 9.6e-11 73.2 40 90.0
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 6.2e-10 70.5 43 69.8
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 8.2e-10 70.1 47 66.0
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 3.1e-09 68.2 46 65.2
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 3.1e-09 68.2 45 66.7
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 2.2e-07 62.0 52 51.9
CAN.G970.17 Capsicum annuum HOM05D004298 ORTHO05D115446 1.4e-06 59.3 58 56.9
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 9.3e-06 56.6 33 78.8


User provided reference genes

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