Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G010300 Phaseolus vulgaris HOM05D004509 ORTHO05D005568 2.6e-89 332.0 165 100.0
Glyma.06G316600 Glycine max HOM05D004509 ORTHO05D005568 1.4e-82 309.7 165 92.7
Lalb_Chr04g0264311 Lupinus albus HOM05D004509 ORTHO05D005568 5.2e-74 281.2 165 83.6
Psat5g226800 Pisum sativum HOM05D004509 ORTHO05D005568 1.5e-73 279.6 168 83.3
Ca_14040_v3 Cicer arietinum L. HOM05D004509 ORTHO05D005568 3.4e-73 278.5 167 80.8
Lalb_Chr15g0079611 Lupinus albus HOM05D004509 ORTHO05D005568 9.8e-73 276.9 164 82.9
Lj3g0006861 Lotus japonicus HOM05D004509 ORTHO05D005568 2.4e-71 272.3 165 81.2
Glyma.04G130500 Glycine max HOM05D004509 ORTHO05D005568 3.1e-71 271.9 146 90.4
Medtr3g007760 Medicago truncatula HOM05D004509 ORTHO05D005568 7.0e-71 270.8 168 80.4
TPR.G12300 Trifolium pratense HOM05D004509 ORTHO05D005568 1.0e-69 266.9 169 79.9
Thecc.03G156200 Theobroma cacao HOM05D004509 ORTHO05D005568 1.0e-66 256.9 166 74.7
Duzib068G0492 Durio zibethinus HOM05D004509 ORTHO05D005568 1.8e-66 256.1 166 75.9
Duzib205G0424 Durio zibethinus HOM05D004509 ORTHO05D005568 4.0e-66 255.0 166 74.1
Gohir.A12G198700 Gossypium hirsutum HOM05D004509 ORTHO05D005568 4.4e-65 251.5 166 74.1
Gohir.D12G201400 Gossypium hirsutum HOM05D004509 ORTHO05D005568 4.4e-65 251.5 166 74.1
Gorai.008G216500 Gossypium raimondii HOM05D004509 ORTHO05D005568 4.4e-65 251.5 166 74.1
Lalb_Chr18g0049081 Lupinus albus HOM05D004509 ORTHO05D005568 7.5e-65 250.8 146 82.9
CSS0008253 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 3.7e-64 248.4 166 73.5
CiPaw.03G093600 Carya illinoinensis HOM05D004509 ORTHO05D005568 1.8e-63 246.1 165 70.3
Dinv28569 Davidia involucrata HOM05D004509 ORTHO05D005568 3.2e-63 245.4 165 72.7
Manes.06G135100 Manihot esculenta HOM05D004509 ORTHO05D005568 5.4e-63 244.6 165 73.3
GSVIVG01018636001 Vitis vinifera HOM05D004509 ORTHO05D005568 5.4e-63 244.6 166 72.9
arahy.Tifrunner.gnm1.ann1.4JD3YM Arachis hypogaea HOM05D004509 ORTHO05D005568 7.0e-63 244.2 169 76.3
Cpa.g.sc3.319 Carica papaya HOM05D004509 ORTHO05D005568 1.2e-62 243.4 166 71.1
FvH4_7g27570 Fragaria vesca HOM05D004509 ORTHO05D005568 1.2e-62 243.4 166 72.9
FAN06G0097 Fragaria x ananassa HOM05D004509 ORTHO05D005568 1.2e-62 243.4 166 72.9
FAN06G3392 Fragaria x ananassa HOM05D004509 ORTHO05D005568 1.2e-62 243.4 166 72.9
FAN10G0128 Fragaria x ananassa HOM05D004509 ORTHO05D005568 1.2e-62 243.4 166 72.9
QL09p019881 Quercus lobata HOM05D004509 ORTHO05D005568 1.2e-62 243.4 165 73.3
Dinv22949 Davidia involucrata HOM05D004509 ORTHO05D005568 1.6e-62 243.0 166 71.7
RcHm_v2.0_Chr1g0374441 Rosa chinensis HOM05D004509 ORTHO05D005568 2.7e-62 242.3 166 72.9
TWI23G1058 Tripterygium wilfordii HOM05D004509 ORTHO05D005568 3.5e-62 241.9 172 71.5
Cfa008172 Carpinus fangiana HOM05D004509 ORTHO05D005568 4.6e-62 241.5 167 71.9
AUR62002199 Chenopodium quinoa HOM05D004509 ORTHO05D005568 5.9e-62 241.1 162 72.2
Prupe.2G277400 Prunus persica HOM05D004509 ORTHO05D005568 5.9e-62 241.1 166 71.7
FAN03G1842 Fragaria x ananassa HOM05D004509 ORTHO05D005568 1.0e-61 240.4 166 71.1
FAN01G2021 Fragaria x ananassa HOM05D004509 ORTHO05D005568 1.3e-61 240.0 166 72.3
Manes.14G035800 Manihot esculenta HOM05D004509 ORTHO05D005568 3.0e-61 238.8 166 69.9
Sabra01G0095600 Salix brachista HOM05D004509 ORTHO05D005568 1.5e-60 236.5 166 69.3
Potri.001G124000 Populus trichocarpa HOM05D004509 ORTHO05D005568 4.3e-60 235.0 164 70.1
Actinidia13576 Actinidia chinensis HOM05D004509 ORTHO05D005568 7.3e-60 234.2 166 68.7
CiPaw.04G060100 Carya illinoinensis HOM05D004509 ORTHO05D005568 7.3e-60 234.2 166 69.3
EL10Ac3g05841 Beta vulgaris HOM05D004509 ORTHO05D005568 1.0e-58 230.3 162 70.4
TAR375G0675 Trochodendron aralioides HOM05D004509 ORTHO05D005568 1.8e-58 229.6 165 70.3
CSS0001277 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 2.3e-58 229.2 165 68.5
CSS0023984 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 2.3e-58 229.2 165 68.5
MD07G1254100 Malus domestica HOM05D004509 ORTHO05D005568 6.8e-58 227.6 166 68.1
MELO3C014338.2 Cucumis melo HOM05D004509 ORTHO05D005568 1.7e-56 223.0 166 66.9
Ciclev10004605m.g Citrus clementina HOM05D004509 ORTHO05D005568 2.2e-56 222.6 147 72.1
Thhalv10024774m.g Eutrema salsugineum HOM05D004509 ORTHO05D005568 2.9e-56 222.2 165 67.3
Ah.13g066850 Amaranthus hybridus HOM05D004509 ORTHO05D005568 3.7e-56 221.9 162 68.5
AL7G27910 Arabidopsis lyrata HOM05D004509 ORTHO05D005568 4.9e-56 221.5 165 66.7
Sp7g23250 Schrenkiella parvula HOM05D004509 ORTHO05D005568 4.9e-56 221.5 165 66.7
Actinidia24699 Actinidia chinensis HOM05D004509 ORTHO05D005568 6.4e-56 221.1 164 68.3
Eucgr.K00157 Eucalyptus grandis HOM05D004509 ORTHO05D005568 8.3e-56 220.7 168 66.1
THA.LOC104808282 Tarenaya hassleriana HOM05D004509 ORTHO05D005568 1.9e-55 219.5 163 69.3
AT4G25230 Arabidopsis thaliana HOM05D004509 ORTHO05D005568 4.1e-55 218.4 165 65.5
Carub.0007s1579 Capsella rubella HOM05D004509 ORTHO05D005568 5.4e-55 218.0 165 65.5
Potri.003G109400 Populus trichocarpa HOM05D004509 ORTHO05D005568 5.4e-55 218.0 162 67.3
TAR374G1004 Trochodendron aralioides HOM05D004509 ORTHO05D005568 5.4e-55 218.0 167 67.1
AL8G25740 Arabidopsis lyrata HOM05D004509 ORTHO05D005568 9.2e-55 217.2 165 65.5
Aa31sc16G230 Aethionema arabicum HOM05D004509 ORTHO05D005568 2.0e-54 216.1 165 65.5
CsaV3_6G036820 Cucumis sativus L. HOM05D004509 ORTHO05D005568 2.0e-54 216.1 166 65.1
BcaB03g12459 Brassica carinata HOM05D004509 ORTHO05D005568 4.6e-54 214.9 165 64.8
A03p55840 Brassica napus HOM05D004509 ORTHO05D005568 6.0e-54 214.5 165 65.5
Rhsim03G0168100 Rhododendron simsii HOM05D004509 ORTHO05D005568 7.8e-54 214.2 147 70.1
COL.COLO4_14126 Corchorus olitorius HOM05D004509 ORTHO05D005568 1.0e-53 213.8 146 68.5
THA.LOC104825064 Tarenaya hassleriana HOM05D004509 ORTHO05D005568 1.3e-53 213.4 165 64.2
Sc13g0007910 Simmondsia chinensis HOM05D004509 ORTHO05D005568 1.7e-53 213.0 162 66.7
BcaC06g32827 Brassica carinata HOM05D004509 ORTHO05D005568 2.3e-53 212.6 165 66.7
vmacro06795 Vaccinium macrocarpon HOM05D004509 ORTHO05D005568 3.9e-53 211.8 147 68.7
C07p54120 Brassica napus HOM05D004509 ORTHO05D005568 6.6e-53 211.1 165 64.2
BolC7t45898H Brassica oleracea HOM05D004509 ORTHO05D005568 1.1e-52 210.3 165 64.2
Cc02_g04230 Coffea canephora HOM05D004509 ORTHO05D005568 1.1e-52 210.3 163 64.4
Hma1.2p1_1640F.1_g295070 Hydrangea macrophylla HOM05D004509 ORTHO05D005568 2.5e-52 209.1 166 65.7
Nn6g33992 Nelumbo nucifera HOM05D004509 ORTHO05D005568 4.3e-52 208.4 167 63.5
Hma1.2p1_1132F.1_g260350 Hydrangea macrophylla HOM05D004509 ORTHO05D005568 9.5e-52 207.2 164 65.2
BraA03t14655Z Brassica rapa HOM05D004509 ORTHO05D005568 1.2e-51 206.8 165 64.8
Sed0019493 Sechium edule HOM05D004509 ORTHO05D005568 1.2e-51 206.8 166 64.5
Carub.0008s1147 Capsella rubella HOM05D004509 ORTHO05D005568 1.6e-51 206.5 164 62.2
BcaC07g38180 Brassica carinata HOM05D004509 ORTHO05D005568 2.1e-51 206.1 167 64.7
A08p21270 Brassica napus HOM05D004509 ORTHO05D005568 2.1e-51 206.1 167 64.7
BraA08t34076Z Brassica rapa HOM05D004509 ORTHO05D005568 2.1e-51 206.1 167 64.7
AUR62015503 Chenopodium quinoa HOM05D004509 ORTHO05D005568 3.6e-51 205.3 143 68.5
Aqoxy7G00754 Aquilegia oxysepala HOM05D004509 ORTHO05D005568 4.7e-51 204.9 168 60.7
CARHR232640 Cardamine hirsuta HOM05D004509 ORTHO05D005568 4.7e-51 204.9 165 63.0
PSO017G1204 Papaver somniferum HOM05D004509 ORTHO05D005568 3.1e-50 202.2 168 62.5
Sed0007620 Sechium edule HOM05D004509 ORTHO05D005568 5.2e-50 201.4 166 62.7
DCAR_018107 Daucus carota HOM05D004509 ORTHO05D005568 1.2e-49 200.3 164 63.4
Gohir.A07G041300 Gossypium hirsutum HOM05D004509 ORTHO05D005568 1.5e-49 199.9 163 63.8
Lj8C42G3 Lonicera japonica HOM05D004509 ORTHO05D005568 1.5e-49 199.9 175 62.9
PSO170G1118 Papaver somniferum HOM05D004509 ORTHO05D005568 7.5e-49 197.6 168 61.3
HanXRQChr14g0461391 Helianthus annuus HOM05D004509 ORTHO05D005568 1.1e-47 193.7 165 64.8
AT5G51450 Arabidopsis thaliana HOM05D004509 ORTHO05D005568 7.1e-47 191.0 183 56.8
ClCG09G013200 Citrullus lanatus HOM05D004509 ORTHO05D005568 9.2e-47 190.7 147 63.3
BolC1t01999H Brassica oleracea HOM05D004509 ORTHO05D005568 2.1e-46 189.5 146 65.1
CAN.G839.2 Capsicum annuum HOM05D004509 ORTHO05D005568 2.1e-46 189.5 159 62.9
Hund11825 Selenicereus undatus HOM05D004509 ORTHO05D005568 2.1e-46 189.5 164 62.2
Nitab4.5_0000262g0140 Nicotiana tabacum HOM05D004509 ORTHO05D005568 3.5e-46 188.7 166 60.2
MBI04_g44458_MAGBIO Magnolia biondii HOM05D004509 ORTHO05D005568 1.7e-45 186.4 167 59.3
Sp6g13610 Schrenkiella parvula HOM05D004509 ORTHO05D005568 1.7e-45 186.4 163 59.5
Sabra03G0075900 Salix brachista HOM05D004509 ORTHO05D005568 2.5e-44 182.6 144 63.9
Sopen06g010960 Solanum pennellii HOM05D004509 ORTHO05D005568 1.6e-43 179.9 160 61.2
ECA238G4038 Erigeron canadensis HOM05D004509 ORTHO05D005568 6.2e-43 177.9 159 59.1
Nitab4.5_0000448g0150 Nicotiana tabacum HOM05D004509 ORTHO05D005568 1.4e-42 176.8 148 62.8
PGR042G2749 Punica granatum HOM05D004509 ORTHO05D005568 3.1e-42 175.6 163 55.8
HanXRQChr07g0205911 Helianthus annuus HOM05D004509 ORTHO05D005568 4.0e-42 175.3 167 59.3
Migut.F00473 Erythranthe guttata HOM05D004509 ORTHO05D005568 9.9e-41 170.6 163 58.3
MSTRG.8823 Avicennia marina HOM05D004509 ORTHO05D005568 1.4e-39 166.8 148 62.8
ATR0589G031 Amborella trichopoda HOM05D004509 ORTHO05D005568 1.9e-39 166.4 170 54.1
Oeu015322.1 Olea europaea HOM05D004509 ORTHO05D005568 2.3e-37 159.5 166 57.2
SGA_v2.0_scaffold70G23600 Striga asiatica HOM05D004509 ORTHO05D005568 2.5e-36 156.0 164 55.5
Gohir.D07G045400 Gossypium hirsutum HOM05D004509 ORTHO05D005568 4.3e-36 155.2 133 58.6
Rhsim03G0167900 Rhododendron simsii HOM05D004509 ORTHO05D005568 9.6e-36 154.1 132 60.6
Peaxi162Scf00054g02212 Petunia axillaris HOM05D004509 ORTHO05D005568 1.6e-35 153.3 147 57.1
Lsat_1_v5_gn_2_129181 Lactuca sativa HOM05D004509 ORTHO05D005568 5.2e-34 148.3 176 54.5
Oeu022490.1 Olea europaea HOM05D004509 ORTHO05D005568 2.6e-33 146.0 162 54.3
SEGI_31032 Sequoiadendron giganteum HOM05D004509 ORTHO05D005568 3.4e-33 145.6 173 47.4
MBI04_g41911_MAGBIO Magnolia biondii HOM05D004509 ORTHO05D005568 1.3e-32 143.7 135 54.8
BcaC09g50792 Brassica carinata HOM05D004509 ORTHO05D005568 1.1e-31 140.6 130 56.2
CDE11G0295 Ceratophyllum demersum HOM05D004509 ORTHO05D005568 1.9e-31 139.8 134 55.2
Zm00001eb321470 Zea mays HOM05D004509 ORTHO05D005568 5.1e-29 131.7 153 45.1
Gorai.001G048500 Gossypium raimondii HOM05D004509 ORTHO05D005568 4.3e-28 128.6 167 48.5
HPP92_021040 Vanilla planifolia HOM05D004509 ORTHO05D005568 4.3e-28 128.6 165 47.9
HPP92_027424 Vanilla planifolia HOM05D004509 ORTHO05D005568 7.3e-28 127.9 165 47.9
Os07g0484300 Oryza sativa ssp. japonica HOM05D004509 ORTHO05D005568 1.3e-27 127.1 151 44.4
Zm00001eb105020 Zea mays HOM05D004509 ORTHO05D005568 1.3e-27 127.1 165 43.6
Atru.chr1.723 Acer truncatum HOM05D004509 ORTHO05D005568 7.4e-20 101.3 60 71.7
CDE02G0565 Ceratophyllum demersum HOM05D000698 ORTHO05D000839 6.2e-19 98.2 107 51.4
unitig_52.g17762 Utricularia gibba HOM05D000486 ORTHO05D000375 6.2e-19 98.2 141 47.5
Mapoly0141s0003 Marchantia polymorpha HOM05D004509 ORTHO05D005568 1.1e-18 97.4 163 39.3
Mapoly0259s0001 Marchantia polymorpha HOM05D004509 ORTHO05D005568 1.1e-18 97.4 163 39.3
Ca_06750_v3 Cicer arietinum L. HOM05D004509 ORTHO05D005568 3.1e-18 95.9 67 68.7
Lsat_1_v5_gn_4_100040 Lactuca sativa HOM05D004509 ORTHO05D005568 1.9e-15 86.7 112 43.8
BraA01t01605Z Brassica rapa HOM05D004509 ORTHO05D005568 1.6e-14 83.6 70 60.0
A01p16520 Brassica napus HOM05D004509 ORTHO05D005568 4.6e-14 82.0 66 62.1
Pp3c13_9770 Physcomitrium patens HOM05D004509 ORTHO05D005568 2.3e-13 79.7 165 35.2
Pp3c3_10340 Physcomitrium patens HOM05D004509 ORTHO05D005568 2.1e-11 73.2 161 36.0
Lsat_1_v5_gn_9_52140 Lactuca sativa HOM05D004509 ORTHO05D005568 1.5e-09 67.0 94 45.7
SMO298G0006 Selaginella moellendorffii HOM05D004509 ORTHO05D005568 1.3e-08 63.9 187 28.9
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 1.1e-07 60.8 26 100.0


User provided reference genes

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