Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 1.1e-107 393.3 194 100.0
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 2.1e-98 362.5 194 91.8
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 2.5e-96 355.5 194 88.7
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 1.3e-95 353.2 194 86.6
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 3.7e-95 351.7 194 86.1
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 1.8e-94 349.4 194 85.6
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 3.1e-94 348.6 194 85.6
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 4.1e-94 348.2 194 85.6
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 4.1e-94 348.2 194 86.6
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 1.2e-93 346.7 194 85.6
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 1.5e-93 346.3 194 85.1
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 2.0e-93 345.9 194 84.5
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 2.6e-93 345.5 194 83.5
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 2.6e-93 345.5 194 83.5
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 2.6e-93 345.5 194 83.5
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 82.5
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.9e-92 342.0 194 82.5
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.9e-92 342.0 194 82.5
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 6.5e-92 340.9 194 83.5
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 1.1e-91 340.1 194 82.0
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 1.9e-91 339.3 194 84.0
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 1.9e-91 339.3 194 82.0
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 83.5
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 2.5e-91 339.0 193 82.9
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 82.5
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 3.2e-91 338.6 194 84.0
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 4.2e-91 338.2 194 81.4
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 7.2e-91 337.4 194 82.0
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 9.4e-91 337.0 194 81.4
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.2e-90 336.7 194 82.0
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 4.6e-90 334.7 194 83.0
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 6.1e-90 334.3 194 80.9
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 1.0e-89 333.6 194 81.4
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 1.8e-89 332.8 194 80.4
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 2.3e-89 332.4 194 81.4
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 5.1e-89 331.3 194 80.9
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 6.7e-89 330.9 194 79.9
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 1.1e-88 330.1 194 80.9
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 1.1e-88 330.1 194 80.4
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 1.5e-88 329.7 194 80.9
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 3.3e-88 328.6 195 81.0
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 4.3e-88 328.2 187 82.9
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 4.3e-88 328.2 200 78.0
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 5.7e-88 327.8 194 80.4
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 7.4e-88 327.4 194 80.4
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 9.7e-88 327.0 194 80.4
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 1.3e-87 326.6 194 79.4
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 1.3e-87 326.6 194 78.9
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 1.3e-87 326.6 194 78.4
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 1.7e-87 326.2 194 79.9
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 1.7e-87 326.2 194 78.9
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 6.3e-87 324.3 194 79.4
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 1.4e-86 323.2 194 78.9
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 3.1e-86 322.0 194 77.8
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 3.1e-86 322.0 194 77.8
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 4.1e-86 321.6 194 78.9
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 4.1e-86 321.6 194 77.8
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 4.1e-86 321.6 194 76.8
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 6.9e-86 320.9 194 78.4
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 2.0e-85 319.3 225 71.1
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 2.0e-85 319.3 194 77.3
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 4.5e-85 318.2 194 75.8
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 4.5e-85 318.2 235 69.4
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 5.9e-85 317.8 194 75.8
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 1.0e-84 317.0 194 75.3
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.0e-84 317.0 194 75.3
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 1.0e-84 317.0 194 75.3
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 1.7e-84 316.2 194 75.3
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 2.2e-84 315.8 214 72.0
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 2.9e-84 315.5 194 74.2
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 5.0e-84 314.7 194 75.3
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 5.0e-84 314.7 194 76.8
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 1.9e-83 312.8 194 74.7
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 1.9e-83 312.8 194 74.7
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 1.9e-83 312.8 194 74.7
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 1.9e-83 312.8 214 71.5
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 4.2e-83 311.6 194 74.7
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 4.2e-83 311.6 214 71.5
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 5.5e-83 311.2 194 74.7
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 7.2e-83 310.8 194 76.3
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 9.4e-83 310.5 194 75.8
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 7.9e-82 307.4 210 70.0
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 1.4e-81 306.6 193 76.2
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 1.8e-81 306.2 178 79.8
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 2.3e-81 305.8 194 72.2
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 3.0e-81 305.4 188 77.1
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 1.1e-80 303.5 194 73.2
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 2.6e-80 302.4 187 75.9
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 4.8e-79 298.1 194 75.3
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 3.1e-78 295.4 174 79.9
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 5.3e-78 294.7 210 69.0
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 5.3e-78 294.7 297 54.9
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 3.5e-77 292.0 194 71.6
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 5.9e-77 291.2 177 76.8
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 1.7e-76 289.7 194 69.1
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 3.8e-76 288.5 163 83.4
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 3.8e-76 288.5 194 72.2
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 6.5e-76 287.7 195 68.7
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 2.5e-75 285.8 194 67.0
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 7.2e-75 284.3 194 66.0
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 4.7e-74 281.6 194 66.5
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 8.8e-73 277.3 274 55.5
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 1.1e-72 276.9 160 83.1
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 3.3e-72 275.4 283 54.1
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 7.0e-70 267.7 163 77.9
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 2.7e-69 265.8 172 70.3
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 8.0e-58 227.6 120 89.2
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 4.4e-56 221.9 120 86.7
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 7.5e-56 221.1 137 78.8
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 4.5e-53 211.8 178 56.2
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 2.5e-51 206.1 134 72.4
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 3.0e-49 199.1 130 72.3
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 8.9e-49 197.6 191 50.8
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 2.2e-47 193.0 123 71.5
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 4.9e-47 191.8 123 72.4
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 2.0e-45 186.4 114 78.1
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 4.3e-43 178.7 112 75.9
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.6e-42 176.8 114 71.9
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 9.8e-40 167.5 173 51.4
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 1.3e-39 167.2 122 64.8
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 2.4e-38 162.9 93 80.6
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 2.0e-37 159.8 99 74.7
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 1.9e-35 153.3 92 79.3
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 6.2e-34 148.3 186 43.5
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 1.6e-29 133.7 76 78.9
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 3.5e-29 132.5 88 72.7
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 3.5e-29 132.5 88 72.7
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 3.5e-29 132.5 71 83.1
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 4.6e-29 132.1 73 80.8
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 3.0e-28 129.4 73 79.5
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 3.0e-28 129.4 73 79.5
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 3.0e-28 129.4 73 79.5
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 2.8e-26 122.9 64 87.5
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.7e-20 103.6 74 67.6
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 7.3e-19 98.2 60 78.3
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 2.3e-12 76.6 83 47.0
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 2.3e-12 76.6 83 47.0
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 3.3e-11 72.8 40 85.0
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 9.6e-11 71.2 55 63.6
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 4.8e-10 68.9 56 60.7
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.8e-09 67.0 84 44.0
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.2e-08 64.3 93 39.8


User provided reference genes

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