Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 0.0e+00 3117.4 1582 100.0
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 0.0e+00 2694.5 1586 86.9
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 0.0e+00 2366.7 1560 79.0
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 0.0e+00 2078.9 1624 68.2
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 0.0e+00 1930.6 1691 62.7
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 0.0e+00 1927.9 1714 62.0
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 0.0e+00 1800.4 1550 63.2
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 0.0e+00 1337.8 1451 54.0
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 0.0e+00 1233.4 1642 45.9
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 0.0e+00 1146.3 1424 49.5
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 0.0e+00 1143.6 1479 46.5
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 0.0e+00 1142.5 1632 44.7
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 0.0e+00 1134.0 1419 49.4
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 5.5e-306 1055.0 1645 42.7
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 1.5e-303 1047.0 1653 41.8
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 5.2e-288 995.3 1757 38.9
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 4.1e-285 985.7 1584 40.6
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 1.6e-281 973.8 1408 42.6
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 2.1e-281 973.4 1691 39.0
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 3.6e-281 972.6 1660 39.2
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 1.3e-278 964.1 1668 39.4
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 2.2e-275 953.4 1642 40.0
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 1.4e-272 944.1 1657 39.0
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 2.6e-271 939.9 1697 38.0
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 5.7e-271 938.7 1674 38.2
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 2.3e-267 926.8 1568 40.3
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 2.0e-260 903.7 1670 38.4
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 5.4e-253 879.0 1654 37.7
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 1.6e-244 850.9 1697 36.9
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 4.7e-233 812.8 1666 35.4
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 4.0e-232 809.7 1679 35.6
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 9.0e-232 808.5 1674 35.2
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 1.9e-229 800.8 1673 35.3
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 1.4e-224 784.6 1677 35.5
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 1.5e-223 781.2 1188 42.8
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 2.6e-223 780.4 1653 34.6
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 3.2e-221 773.5 1667 35.3
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 7.1e-221 772.3 1183 42.6
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 9.3e-221 771.9 1662 34.7
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 1.3e-219 768.1 1654 35.6
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 3.9e-219 766.5 1654 34.8
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 1.5e-218 764.6 1649 35.6
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 1.5e-218 764.6 1658 34.5
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 1.9e-218 764.2 1666 35.1
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 2.5e-218 763.8 1652 34.8
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 4.8e-217 759.6 1634 36.0
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 8.1e-217 758.8 1614 35.3
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 4.5e-215 753.1 1663 35.2
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 5.8e-215 752.7 1633 36.1
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 1.3e-211 741.5 1713 34.6
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 1.9e-210 737.6 1654 35.0
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 5.6e-210 736.1 1661 34.6
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 5.6e-210 736.1 1488 35.3
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 5.8e-207 726.1 1681 34.1
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 4.9e-206 723.0 1657 34.6
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 6.5e-206 722.6 1652 34.7
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 3.5e-204 716.8 1725 33.4
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.0e-203 713.8 1657 33.9
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 5.1e-203 713.0 1494 36.4
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 6.7e-203 712.6 1659 33.9
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 1.1e-202 711.8 1658 34.2
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 1.1e-200 705.3 1708 33.7
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 2.0e-199 701.0 1641 34.8
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 4.5e-199 699.9 1615 33.7
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 1.0e-198 698.7 1486 34.9
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.2e-198 697.6 1657 33.8
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.2e-198 697.6 1666 34.0
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 1.0e-195 688.7 1737 32.5
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 7.4e-194 682.6 1733 32.0
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 6.3e-193 679.5 1664 33.4
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 6.3e-193 679.5 1654 33.3
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 7.7e-191 672.5 1629 32.5
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 2.7e-180 637.5 1717 32.2
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 3.1e-168 597.4 736 49.9
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 4.7e-164 583.6 780 46.8
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 2.4e-160 571.2 1615 30.2
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 3.1e-160 570.9 1151 35.0
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 1.6e-159 568.5 821 44.1
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.3e-150 538.9 1236 34.1
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 1.3e-142 512.3 1633 29.2
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 2.4e-136 491.5 1646 28.1
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 7.0e-136 490.0 1636 28.5
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 2.3e-131 474.9 695 41.0
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 3.0e-126 458.0 1595 29.0
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 7.3e-125 453.4 1681 27.7
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 1.6e-124 452.2 978 34.9
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 6.2e-124 450.3 856 35.9
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 2.4e-123 448.4 1686 27.3
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 8.9e-123 446.4 450 55.8
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 9.2e-120 436.4 1783 26.4
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 2.3e-118 431.8 1392 28.7
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 8.7e-118 429.9 1545 29.1
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 2.9e-113 414.8 680 40.1
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 3.8e-113 414.5 1571 28.8
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 1.0e-110 406.4 1627 28.1
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 1.3e-110 406.0 1431 29.1
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 2.1e-108 398.7 1638 26.4
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 6.2e-108 397.1 1331 28.7
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 7.1e-104 383.6 675 38.8
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 1.2e-98 366.3 810 34.0
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 5.5e-96 357.5 652 35.6
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 2.5e-80 305.4 685 34.9
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.3e-76 293.1 510 39.2
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 3.1e-59 235.3 602 33.6
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 2.2e-49 202.6 590 31.7
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 7.5e-45 187.6 527 27.9
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 2.2e-44 186.0 518 33.0
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 1.7e-41 176.4 147 59.9
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 1.5e-40 173.3 233 41.2
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 2.0e-34 152.9 227 36.6
Hund11747 Selenicereus undatus HOM05D005579 ORTHO05D006775 1.3e-33 150.2 214 40.7
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 2.6e-29 136.0 226 32.7
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 3.5e-26 125.6 148 45.3
SEGI_30883 Sequoiadendron giganteum HOM05D005579 ORTHO05D006775 5.8e-21 108.2 597 22.9
MBI17_g46331_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 1.7e-20 106.7 301 31.2
MD01G1200900 Malus domestica HOM05D005579 ORTHO05D006775 8.3e-20 104.4 298 30.9
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 3.2e-19 102.4 324 29.3
Medtr6g045353 Medicago truncatula HOM05D005579 ORTHO05D006775 1.3e-17 97.1 95 55.8
Lalb_Chr19g0130841 Lupinus albus HOM05D005579 ORTHO05D006775 8.1e-15 87.8 85 55.3
Haze_13709 Corylus avellana HOM05D005579 ORTHO05D006775 9.9e-13 80.9 163 38.0
TPR.G31959 Trifolium pratense HOM05D061576 ORTHO05D006775 5.4e-11 75.1 149 32.2
Dinv28442 Davidia involucrata HOM05D005579 ORTHO05D006775 1.2e-10 73.9 201 32.3
FvH4_7g29490 Fragaria vesca HOM05D005579 ORTHO05D006775 8.6e-09 67.8 89 44.9
FAN06G4680 Fragaria x ananassa HOM05D005579 ORTHO05D006775 8.6e-09 67.8 89 44.9
FAN10G3029 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.5e-08 67.0 99 43.4
TAR375G0314 Trochodendron aralioides HOM05D005579 ORTHO05D006775 1.5e-08 67.0 225 28.4
CBR_g61457 Chara braunii HOM05D005579 ORTHO05D006775 1.9e-08 66.6 145 29.7
QL09p014214 Quercus lobata HOM05D005579 ORTHO05D006775 5.6e-08 65.1 200 33.0
FAN06G4979 Fragaria x ananassa HOM05D005579 ORTHO05D006775 4.7e-07 62.0 84 41.7
Lalb_Chr19g0130851 Lupinus albus HOM05D005579 ORTHO05D006775 4.0e-06 58.9 70 48.6


User provided reference genes

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