Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.2e-164 582.4 327 100.0
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 4.2e-152 541.6 327 94.2
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 1.1e-149 533.5 360 86.7
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 4.1e-147 525.0 333 90.4
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 1.0e-137 493.8 330 87.0
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 2.1e-135 486.1 336 85.1
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 2.3e-134 482.6 327 85.9
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 2.0e-130 469.5 323 84.5
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 1.3e-129 466.8 327 83.8
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 1.8e-126 456.4 330 81.5
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 3.0e-126 455.7 324 81.2
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 2.0e-125 453.0 325 80.3
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 9.8e-125 450.7 326 81.6
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 2.8e-124 449.1 324 81.8
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 8.3e-124 447.6 328 81.4
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.4e-123 446.8 328 80.2
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 1.8e-123 446.4 329 81.8
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 3.2e-123 445.7 330 81.2
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 9.2e-123 444.1 342 77.5
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 2.0e-122 443.0 325 81.2
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 2.0e-122 443.0 343 77.6
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 2.9e-121 439.1 325 79.4
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 3.9e-121 438.7 330 80.9
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 8.6e-121 437.6 328 78.7
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.1e-120 437.2 325 80.0
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 2.5e-120 436.0 326 80.4
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.5e-120 436.0 330 77.9
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 5.6e-120 434.9 327 79.2
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 5.6e-120 434.9 325 79.7
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 5.6e-120 434.9 328 77.4
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 9.5e-120 434.1 331 77.3
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 9.5e-120 434.1 327 80.7
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 4.7e-119 431.8 330 80.0
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 8.0e-119 431.0 324 79.3
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 2.3e-118 429.5 329 78.1
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 6.8e-118 427.9 325 77.8
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 8.9e-118 427.6 326 78.5
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 2.0e-117 426.4 324 78.1
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 2.0e-117 426.4 324 78.1
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 2.6e-117 426.0 325 78.5
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 2.6e-117 426.0 327 80.1
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 3.4e-117 425.6 336 75.3
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 4.4e-117 425.2 325 78.5
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 4.4e-117 425.2 330 76.7
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 5.8e-117 424.9 326 77.9
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 7.5e-117 424.5 324 77.8
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 7.5e-117 424.5 324 77.8
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 7.5e-117 424.5 325 78.5
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 7.5e-117 424.5 330 77.9
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.3e-116 423.7 328 78.0
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 2.2e-116 422.9 326 78.8
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 2.2e-116 422.9 331 77.3
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 3.7e-116 422.2 330 76.4
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 3.7e-116 422.2 329 76.3
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 4.9e-116 421.8 330 76.4
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 4.9e-116 421.8 331 77.0
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 6.4e-116 421.4 330 75.8
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 1.1e-115 420.6 328 75.6
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 1.1e-115 420.6 333 76.9
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 1.4e-115 420.2 289 81.3
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.9e-115 419.9 333 75.7
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 2.4e-115 419.5 328 75.3
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 3.2e-115 419.1 332 75.6
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 4.1e-115 418.7 324 76.9
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 5.4e-115 418.3 327 76.8
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 7.0e-115 417.9 334 74.9
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 9.2e-115 417.5 324 75.9
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 1.2e-114 417.2 306 79.7
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 1.6e-114 416.8 330 74.8
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 2.0e-114 416.4 327 77.4
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 4.6e-114 415.2 328 74.7
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 4.6e-114 415.2 328 76.2
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 6.0e-114 414.8 324 75.3
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 7.8e-114 414.5 331 76.4
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 7.8e-114 414.5 337 75.7
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 1.3e-113 413.7 324 75.3
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 1.3e-113 413.7 326 78.5
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.3e-113 413.7 328 74.7
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 1.7e-113 413.3 337 73.9
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 3.0e-113 412.5 319 77.7
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 6.6e-113 411.4 326 75.5
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 1.1e-112 410.6 330 75.5
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 1.1e-112 410.6 327 74.6
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 1.5e-112 410.2 317 77.0
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.9e-112 409.8 328 75.0
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 4.3e-112 408.7 329 74.2
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.3e-112 408.7 334 74.3
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 4.3e-112 408.7 326 75.5
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 5.6e-112 408.3 323 74.6
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 7.3e-112 407.9 324 75.3
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 9.5e-112 407.5 331 74.3
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 9.5e-112 407.5 380 67.6
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 9.5e-112 407.5 325 74.8
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 1.2e-111 407.1 331 73.1
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 1.2e-111 407.1 329 74.8
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 1.6e-111 406.8 336 75.9
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 1.6e-111 406.8 324 75.0
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 2.1e-111 406.4 327 75.8
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 2.8e-111 406.0 327 74.0
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 4.7e-111 405.2 327 74.9
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 6.2e-111 404.8 334 71.9
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.4e-110 403.7 321 75.1
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 2.3e-110 402.9 321 75.1
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 4.0e-110 402.1 321 75.1
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 5.2e-110 401.7 324 74.4
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 5.2e-110 401.7 324 74.4
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 6.8e-110 401.4 322 75.8
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 8.9e-110 401.0 281 81.1
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 8.9e-110 401.0 335 71.6
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 2.0e-109 399.8 327 73.4
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 2.0e-109 399.8 329 73.3
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 4.4e-109 398.7 332 73.8
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 5.8e-109 398.3 328 73.8
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 5.8e-109 398.3 334 72.5
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 5.8e-109 398.3 324 74.1
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 5.8e-109 398.3 324 74.1
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 5.8e-109 398.3 324 74.1
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 5.8e-109 398.3 329 72.6
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.7e-108 396.7 282 82.6
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 2.9e-108 396.0 330 72.1
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 3.7e-108 395.6 327 73.1
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 1.4e-107 393.7 327 73.1
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 5.4e-107 391.7 297 76.8
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 7.8e-106 387.9 324 72.8
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 1.0e-105 387.5 307 74.3
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.3e-105 387.1 252 88.9
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 5.1e-105 385.2 330 72.1
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 8.6e-105 384.4 309 68.0
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.5e-104 383.6 330 71.5
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 1.2e-103 380.6 320 74.7
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 2.8e-103 379.4 304 76.3
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 8.1e-103 377.9 272 81.6
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.8e-102 376.7 280 78.6
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 1.2e-101 374.0 300 75.0
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 2.6e-101 372.9 310 75.8
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 6.4e-100 368.2 300 75.3
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 2.4e-99 366.3 262 82.8
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.4e-99 366.3 247 75.3
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 3.3e-96 355.9 314 68.2
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 7.3e-96 354.8 272 73.9
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 4.0e-94 349.0 231 89.2
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 1.5e-93 347.1 333 66.1
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 3.8e-92 342.4 231 84.8
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.2e-91 339.3 228 88.6
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.2e-90 337.4 268 74.3
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.3e-89 333.2 326 58.6
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 5.8e-85 318.5 328 64.3
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 5.8e-85 318.5 328 64.3
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 6.4e-84 315.1 258 70.2
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 4.6e-82 308.9 312 59.3
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 6.0e-82 308.5 359 59.1
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 1.5e-80 303.9 256 76.6
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 2.5e-80 303.1 238 81.1
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 3.1e-78 296.2 247 68.4
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 2.2e-76 290.0 250 59.6
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 8.4e-76 288.1 252 60.3
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 1.1e-75 287.7 234 75.2
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 4.2e-75 285.8 292 58.6
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 1.2e-74 284.3 196 85.7
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 4.6e-74 282.3 249 75.5
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 3.0e-57 226.5 316 44.3
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 1.8e-54 217.2 149 73.2
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 1.7e-52 210.7 245 52.2
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 7.2e-51 205.3 124 80.6
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.6e-50 204.1 125 80.8
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 6.7e-49 198.7 149 71.1
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 1.3e-47 194.5 173 74.6
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.1e-43 181.4 170 74.7
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.1e-43 181.4 131 73.3
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.6e-34 151.0 266 41.0
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 3.6e-34 149.8 126 67.5
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 3.3e-32 143.3 92 78.3
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 1.4e-30 137.9 87 77.0
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 1.8e-30 137.5 108 75.0
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 1.5e-24 117.9 90 70.0
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 1.4e-22 111.3 149 56.4
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 1.0e-17 95.1 150 53.3
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 5.2e-17 92.8 107 65.4
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 2.0e-16 90.9 83 80.7
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 2.2e-15 87.4 122 47.5
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 8.6e-12 75.5 93 46.2
MCO02G269 Micromonas commoda HOM05D066820 ORTHO05D004315 7.0e-06 55.8 69 37.7


User provided reference genes

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