Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 2.4e-229 798.5 414 100.0
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 3.6e-225 784.6 414 98.1
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 3.1e-216 755.0 414 94.0
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 1.2e-215 753.1 411 94.9
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 3.6e-209 731.5 414 90.8
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 7.1e-205 717.2 414 88.6
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 6.0e-204 714.1 414 88.4
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 2.3e-203 712.2 416 89.4
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 3.3e-202 708.4 414 87.4
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 3.3e-202 708.4 414 87.2
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 3.8e-198 694.9 414 86.7
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 6.4e-198 694.1 414 85.7
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 1.1e-197 693.3 414 84.5
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 3.2e-197 691.8 414 84.1
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 3.2e-197 691.8 414 85.3
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 5.4e-197 691.0 414 84.3
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 6.0e-196 687.6 414 84.3
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 1.3e-195 686.4 414 83.6
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 1.8e-195 686.0 414 84.1
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 3.0e-195 685.3 414 84.8
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 3.9e-195 684.9 414 83.6
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 2.5e-194 682.2 410 84.9
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 3.3e-194 681.8 414 83.1
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 3.3e-194 681.8 414 83.1
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 3.3e-194 681.8 414 84.1
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 3.3e-194 681.8 412 84.7
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 3.3e-194 681.8 445 79.3
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 7.4e-194 680.6 414 83.1
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 1.1e-192 676.8 412 83.0
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 1.4e-192 676.4 409 84.1
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 2.4e-192 675.6 416 83.7
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 9.0e-192 673.7 415 84.1
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 2.6e-191 672.2 414 82.9
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 3.4e-191 671.8 413 82.8
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 7.6e-191 670.6 414 81.9
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 1.0e-190 670.2 414 81.6
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.0e-190 670.2 409 84.1
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.3e-190 669.8 414 81.6
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 1.7e-190 669.5 413 82.1
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 1.7e-190 669.5 413 82.8
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.9e-190 668.7 414 81.6
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 4.9e-190 667.9 413 82.3
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 8.4e-190 667.2 413 81.4
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 5.5e-189 664.5 414 81.6
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 7.1e-189 664.1 411 82.5
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 9.3e-189 663.7 414 82.1
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 2.1e-188 662.5 414 80.4
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 4.6e-188 661.4 414 80.4
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 2.3e-187 659.1 411 81.3
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.0e-187 658.7 413 80.6
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 3.9e-187 658.3 415 81.7
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 6.7e-187 657.5 409 80.9
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 6.7e-187 657.5 413 79.9
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 1.1e-186 656.8 414 80.9
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 1.5e-186 656.4 413 79.7
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 1.9e-186 656.0 414 80.4
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 1.9e-186 656.0 414 80.9
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 4.3e-186 654.8 414 80.4
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 5.7e-186 654.4 414 80.0
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 5.7e-186 654.4 420 79.5
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 7.4e-186 654.1 414 80.0
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 7.4e-186 654.1 414 80.0
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.4e-186 654.1 414 80.9
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 9.6e-186 653.7 414 80.7
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 2.1e-185 652.5 414 80.4
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 2.8e-185 652.1 411 79.6
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 2.8e-185 652.1 413 80.4
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 3.7e-185 651.7 413 79.9
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 4.8e-185 651.4 414 80.2
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 4.8e-185 651.4 413 81.1
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 1.1e-184 650.2 414 80.2
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 3.1e-184 648.7 420 78.6
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 9.0e-184 647.1 413 78.9
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 1.3e-182 643.3 410 81.0
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 3.8e-182 641.7 414 78.5
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 1.1e-181 640.2 426 77.7
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 1.1e-181 640.2 426 77.7
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-181 639.4 426 77.5
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 7.2e-181 637.5 405 82.5
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 1.6e-180 636.3 414 78.3
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 5.1e-179 631.3 414 78.7
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 9.7e-178 627.1 429 76.0
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 2.4e-176 622.5 414 77.8
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 4.5e-175 618.2 413 73.6
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 5.9e-175 617.8 415 75.9
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 5.9e-175 617.8 415 75.7
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.7e-174 616.3 411 76.2
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 2.9e-174 615.5 415 75.2
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 1.2e-172 610.1 438 72.6
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.5e-170 603.2 371 83.3
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 2.0e-170 602.8 375 82.4
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 3.1e-168 595.5 416 74.3
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 2.6e-162 575.9 412 74.0
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 4.4e-162 575.1 409 72.9
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 8.2e-161 570.9 414 72.0
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 1.1e-160 570.5 410 70.2
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 4.2e-157 558.5 371 78.7
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 1.5e-154 550.1 410 67.8
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 1.7e-153 546.6 323 86.1
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 2.0e-151 539.7 418 68.2
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 7.2e-149 531.2 485 62.1
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 8.8e-147 524.2 405 63.2
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.6e-143 513.5 411 66.7
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 4.5e-143 511.9 397 65.2
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 3.0e-139 499.2 412 61.7
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 2.6e-138 496.1 296 83.8
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 3.8e-134 482.3 305 79.0
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.3e-133 478.8 294 83.3
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 9.5e-133 477.6 294 83.3
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.4e-123 447.2 257 88.7
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 8.9e-115 417.9 256 81.2
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.3e-113 414.1 285 73.3
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 2.4e-112 409.8 314 68.2
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 1.8e-107 393.7 313 66.5
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 4.0e-99 365.9 292 69.5
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 4.4e-98 362.5 284 66.5
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 5.8e-98 362.1 400 48.0
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 3.9e-86 322.8 190 88.9
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 6.0e-79 298.9 205 75.1
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.7e-78 295.4 238 65.5
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 1.2e-74 284.6 184 75.5
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.0e-70 270.0 173 79.8
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.1e-68 263.8 199 68.8
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.1e-63 247.3 204 65.7
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 2.1e-63 247.3 396 37.1
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 8.2e-60 235.3 220 59.5
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 7.7e-58 228.8 140 84.3
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.6e-55 221.1 400 32.8
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 3.9e-54 216.5 322 35.4
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 1.3e-52 211.5 121 83.5
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.7e-49 201.1 126 79.4
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.5e-45 188.0 199 57.8
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 2.2e-44 184.1 102 87.3
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-40 171.8 161 60.2
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 9.4e-40 168.7 177 55.4
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 4.8e-36 156.4 414 30.9
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.8e-35 154.5 83 89.2
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.6e-34 151.4 114 67.5
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 5.0e-33 146.4 107 61.7
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.0e-30 138.7 71 93.0
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 1.3e-25 121.7 115 61.7
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 2.9e-17 94.0 179 41.9
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 2.9e-17 94.0 99 57.6
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 3.8e-17 93.6 114 54.4
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.8e-17 93.6 51 86.3
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 3.8e-17 93.6 158 38.0
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 1.4e-14 85.1 182 40.7
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 5.7e-13 79.7 54 81.5
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.4e-11 74.3 50 72.0
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.7e-10 70.9 71 56.3
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.0e-09 68.9 57 63.2
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 1.1e-08 65.5 81 46.9
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 1.9e-08 64.7 38 81.6
Solyc12g070150.1 Solanum lycopersicum HOM05D004528 ORTHO05D005815 6.8e-06 56.2 45 62.2


User provided reference genes

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