Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 3.3e-168 595.1 340 100.0
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 8.8e-161 570.5 340 93.5
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 1.2e-160 570.1 340 96.8
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 9.7e-160 567.0 342 93.9
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 2.7e-157 558.9 340 94.1
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 3.6e-154 548.5 356 89.9
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 8.0e-154 547.4 341 90.3
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 1.0e-153 547.0 340 90.3
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 1.2e-152 543.5 340 90.0
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 3.4e-152 542.0 340 89.7
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 5.7e-152 541.2 340 89.1
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 9.8e-152 540.4 340 88.8
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.7e-151 539.7 340 88.8
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 1.7e-151 539.7 340 88.8
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 2.8e-151 538.9 340 89.4
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 3.7e-151 538.5 340 84.4
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 4.8e-151 538.1 340 88.8
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 6.3e-151 537.7 340 87.6
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 1.4e-150 536.6 340 87.9
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 3.1e-150 535.4 340 89.4
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 4.1e-150 535.0 340 87.6
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.6e-149 533.1 340 87.6
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 1.6e-149 533.1 340 87.9
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 2.0e-149 532.7 340 87.9
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 7.7e-149 530.8 340 87.9
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 1.3e-148 530.0 340 87.1
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 1.3e-148 530.0 340 86.8
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 3.8e-148 528.5 340 87.4
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 8.6e-148 527.3 349 86.2
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 1.9e-147 526.2 340 87.9
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 2.5e-147 525.8 340 86.8
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 2.5e-147 525.8 340 86.2
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 4.2e-147 525.0 340 86.5
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 1.2e-146 523.5 340 87.4
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 1.2e-146 523.5 340 86.5
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 1.2e-146 523.5 340 85.0
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.6e-146 523.1 340 84.7
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 1.6e-146 523.1 340 86.8
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 1.6e-146 523.1 340 87.9
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 2.1e-146 522.7 340 89.1
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 2.1e-146 522.7 340 85.9
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 3.6e-146 521.9 340 86.2
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 8.0e-146 520.8 340 80.3
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 8.0e-146 520.8 339 85.8
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 8.0e-146 520.8 339 85.8
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.8e-145 519.6 342 85.7
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 2.3e-145 519.2 340 88.5
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 2.3e-145 519.2 340 88.5
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 3.0e-145 518.8 340 86.5
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 5.2e-145 518.1 340 88.2
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 5.2e-145 518.1 340 88.2
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 1.2e-144 516.9 340 85.9
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 2.0e-144 516.2 340 87.9
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 7.5e-144 514.2 340 84.1
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 7.5e-144 514.2 341 86.2
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 7.5e-144 514.2 340 85.9
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 2.8e-143 512.3 340 86.2
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 2.8e-143 512.3 324 89.8
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 4.9e-143 511.5 340 83.8
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 6.3e-143 511.1 342 82.2
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 8.3e-143 510.8 325 91.4
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 8.3e-143 510.8 325 91.4
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 1.1e-142 510.4 341 83.9
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 1.1e-142 510.4 363 82.1
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 1.4e-142 510.0 341 83.6
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 2.4e-142 509.2 341 83.6
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 3.2e-142 508.8 372 80.1
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 5.4e-142 508.1 341 81.8
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 5.4e-142 508.1 341 82.1
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 5.4e-142 508.1 340 87.6
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 7.0e-142 507.7 340 83.5
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 2.7e-141 505.8 340 86.5
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 7.8e-141 504.2 340 83.5
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 1.7e-140 503.1 344 83.1
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 2.9e-140 502.3 324 88.6
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 2.9e-140 502.3 365 79.5
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 3.9e-140 501.9 340 83.5
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 1.1e-139 500.4 358 80.4
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 1.1e-139 500.4 358 80.4
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 2.5e-139 499.2 348 82.5
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 2.5e-139 499.2 350 82.6
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 2.5e-139 499.2 341 83.3
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 4.3e-139 498.4 354 81.9
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 5.6e-139 498.0 341 82.4
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 5.6e-139 498.0 341 82.4
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 7.3e-139 497.7 340 80.9
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 1.2e-138 496.9 341 83.0
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 1.6e-138 496.5 350 82.3
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 2.8e-138 495.7 340 79.4
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 4.7e-138 495.0 333 84.7
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 1.4e-137 493.4 340 77.9
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 3.1e-137 492.3 334 84.7
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 4.0e-137 491.9 324 85.2
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 4.0e-137 491.9 352 83.8
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 2.6e-136 489.2 340 82.4
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 4.4e-136 488.4 333 83.8
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 5.8e-136 488.0 340 80.9
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 2.4e-134 482.6 340 80.9
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 6.0e-133 478.0 370 76.2
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 1.7e-132 476.5 377 74.0
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.1e-131 473.8 340 81.5
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 8.9e-129 464.2 369 75.9
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 8.9e-129 464.2 369 75.9
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 3.2e-126 455.7 340 71.2
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 2.7e-125 452.6 308 85.4
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 2.3e-124 449.5 341 77.7
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 2.3e-124 449.5 340 76.2
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 4.3e-123 445.3 284 88.4
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 3.9e-116 422.2 336 77.4
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 5.1e-116 421.8 355 71.3
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 1.6e-114 416.8 516 54.5
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 1.7e-111 406.8 277 87.0
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.2e-110 402.1 342 76.6
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 6.6e-108 394.8 224 86.6
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 4.4e-104 382.1 321 75.1
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 5.6e-99 365.2 258 85.7
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 7.3e-99 364.8 323 73.1
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.8e-98 362.8 340 69.7
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 6.4e-95 351.7 277 74.0
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 4.3e-91 339.0 340 64.7
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 9.3e-86 321.2 382 48.4
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 5.7e-83 312.0 147 100.0
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 6.5e-79 298.5 333 51.1
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 2.8e-66 256.5 180 72.2
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 3.2e-62 243.0 214 74.3
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 2.7e-61 240.0 327 45.9
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 3.6e-53 213.0 116 86.2
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.6e-43 180.3 82 100.0
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.6e-40 171.0 91 93.4
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 2.0e-40 170.6 168 63.1
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 5.0e-39 166.0 89 100.0
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.2e-35 154.8 89 91.0
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 5.0e-23 112.8 55 98.2
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.5e-22 111.3 64 93.8
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 6.4e-18 95.9 203 29.6
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 3.2e-17 93.6 200 32.5
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.1e-14 85.1 64 65.6
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 4.7e-13 79.7 39 92.3
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.9e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.9e-12 75.5 41 90.2
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 2.9e-10 70.5 45 75.6
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 3.7e-10 70.1 73 80.8
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 3.7e-10 70.1 30 96.7


User provided reference genes

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