Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G299004 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 3.7e-114 414.8 205 100.0
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 7.3e-86 320.9 168 95.8
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 2.1e-85 319.3 185 88.1
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 3.4e-83 312.0 168 92.3
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 1.2e-80 303.5 168 87.5
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 6.0e-80 301.2 168 88.1
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 1.0e-79 300.4 168 88.1
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 3.8e-74 282.0 168 83.3
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.4e-73 280.0 167 79.6
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.4e-73 280.0 167 79.6
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 1.9e-73 279.6 169 79.9
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 1.9e-73 279.6 170 78.2
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 4.2e-73 278.5 167 80.2
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 7.1e-73 277.7 167 78.4
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 6.0e-72 274.6 167 79.0
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 2.4e-68 262.7 168 73.8
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 2.2e-66 256.1 168 72.6
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 7.1e-65 251.1 177 68.9
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 7.1e-65 251.1 169 71.0
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 9.3e-65 250.8 169 72.2
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 9.3e-65 250.8 169 71.0
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 1.2e-64 250.4 169 72.2
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 4.6e-64 248.4 168 69.6
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 6.0e-64 248.1 169 71.0
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 1.3e-63 246.9 168 71.4
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 1.3e-63 246.9 169 72.2
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 1.8e-63 246.5 169 70.4
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 1.8e-63 246.5 168 70.8
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 3.0e-63 245.7 169 69.2
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 5.1e-63 245.0 167 71.3
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 5.1e-63 245.0 169 69.8
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 6.7e-63 244.6 168 69.6
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 6.7e-63 244.6 168 68.5
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 6.7e-63 244.6 167 70.1
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 1.9e-62 243.0 168 68.5
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 1.9e-62 243.0 168 68.5
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 1.9e-62 243.0 168 68.5
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 1.9e-62 243.0 168 70.2
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 2.5e-62 242.7 170 68.2
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 2.5e-62 242.7 168 69.6
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 4.3e-62 241.9 168 69.0
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 5.7e-62 241.5 186 65.6
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 7.4e-62 241.1 169 67.5
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 7.4e-62 241.1 168 67.9
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 7.4e-62 241.1 168 69.0
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 9.6e-62 240.7 167 68.3
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 9.6e-62 240.7 169 70.4
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 3.7e-61 238.8 169 68.6
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 3.7e-61 238.8 168 67.3
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 4.8e-61 238.4 169 67.5
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 6.3e-61 238.0 169 68.6
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 8.2e-61 237.7 169 67.5
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 8.2e-61 237.7 170 69.4
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 1.4e-60 236.9 169 68.0
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 1.4e-60 236.9 163 67.5
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 5.3e-60 235.0 170 70.0
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 5.3e-60 235.0 170 70.0
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 9.0e-60 234.2 166 69.9
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 2.6e-59 232.6 168 68.5
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 5.9e-59 231.5 169 65.7
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 5.9e-59 231.5 166 66.9
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 5.9e-59 231.5 172 64.0
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 1.3e-58 230.3 169 66.9
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 2.2e-58 229.6 167 64.7
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 2.2e-58 229.6 167 67.1
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 2.9e-58 229.2 169 66.9
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 6.5e-58 228.0 169 66.3
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 6.5e-58 228.0 169 67.5
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 3.2e-57 225.7 165 67.9
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 7.2e-57 224.6 165 66.7
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 7.2e-57 224.6 167 68.3
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 2.7e-56 222.6 162 66.7
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 3.6e-56 222.2 193 58.5
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 4.6e-56 221.9 145 72.4
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 1.0e-55 220.7 169 63.3
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 1.3e-55 220.3 168 63.1
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 2.3e-55 219.5 167 62.3
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 6.7e-55 218.0 167 62.9
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 8.7e-55 217.6 167 63.5
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 8.7e-55 217.6 167 64.1
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 8.7e-55 217.6 167 64.1
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 8.7e-55 217.6 167 64.1
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 1.1e-54 217.2 176 60.2
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 1.1e-54 217.2 168 64.3
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 1.9e-54 216.5 168 63.1
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 5.7e-54 214.9 167 62.3
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 9.7e-54 214.2 168 61.9
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 1.3e-53 213.8 167 61.7
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 1.3e-53 213.8 167 61.7
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 3.7e-53 212.2 167 61.1
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 3.7e-53 212.2 167 61.1
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 3.7e-53 212.2 167 61.1
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 3.7e-53 212.2 162 64.2
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 6.3e-53 211.5 169 62.1
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 8.2e-53 211.1 168 65.5
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.4e-52 210.3 168 63.1
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 1.4e-52 210.3 168 61.3
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 1.4e-52 210.3 168 61.3
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 1.8e-52 209.9 169 61.5
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 1.8e-52 209.9 168 60.1
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 2.4e-52 209.5 167 62.3
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 2.4e-52 209.5 167 62.3
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 4.1e-52 208.8 168 61.9
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 5.3e-52 208.4 140 72.9
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 1.2e-51 207.2 169 62.1
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.2e-51 207.2 169 60.9
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 2.2e-50 203.0 168 58.3
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 6.5e-50 201.4 168 61.3
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 5.5e-49 198.4 150 66.0
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 1.2e-48 197.2 195 53.8
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 6.1e-48 194.9 170 58.8
Nitab4.5_0005797g0050 Nicotiana tabacum HOM05D003501 ORTHO05D004388 3.9e-47 192.2 153 61.4
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 5.1e-47 191.8 167 58.1
arahy.Tifrunner.gnm1.ann1.3N5Q80 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.5e-46 190.3 117 78.6
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 1.5e-46 190.3 161 57.8
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 2.6e-46 189.5 157 58.6
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 7.4e-46 188.0 174 55.2
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 7.4e-46 188.0 166 55.4
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 9.7e-46 187.6 199 51.8
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.3e-45 187.2 149 57.7
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 1.4e-44 183.7 169 53.8
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 4.1e-44 182.2 160 53.1
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 5.3e-44 181.8 168 57.7
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 6.5e-42 174.9 170 55.9
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 8.5e-42 174.5 149 59.1
SalBow1G0615 Salvia bowleyana HOM05D003501 ORTHO05D004388 2.5e-41 172.9 169 54.4
CARHR191430 Cardamine hirsuta HOM05D003501 ORTHO05D004388 8.2e-37 157.9 114 67.5
Prupe.6G111200 Prunus persica HOM05D003501 ORTHO05D004388 1.4e-36 157.1 130 60.8
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 1.8e-36 156.8 124 63.7
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 1.2e-35 154.1 141 51.1
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.1e-33 147.5 138 52.2
Haze_27241 Corylus avellana HOM05D003501 ORTHO05D004388 1.6e-32 143.7 166 44.6
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 2.1e-32 143.3 150 47.3
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 4.7e-32 142.1 105 64.8
HPP92_000027 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.3e-29 134.0 103 65.0
ATR0097G041 Amborella trichopoda HOM05D003501 ORTHO05D004388 2.4e-28 129.8 121 55.4
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 2.4e-28 129.8 136 47.8
EL10As8g23847 Beta vulgaris HOM05D003501 ORTHO05D004388 8.5e-26 121.3 84 70.2
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 5.5e-25 118.6 107 57.0
ECA232G4075 Erigeron canadensis HOM05D003501 ORTHO05D004388 1.8e-23 113.6 96 60.4
Actinidia15652 Actinidia chinensis HOM05D003501 ORTHO05D004388 5.2e-23 112.1 71 73.2
SMO201G0018 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.5e-19 99.0 146 39.0
Actinidia15653 Actinidia chinensis HOM05D003501 ORTHO05D004388 5.0e-18 95.5 76 57.9
HPP92_000050 Vanilla planifolia HOM05D003501 ORTHO05D004388 8.6e-18 94.7 96 47.9
SMO163G0016 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 9.5e-17 91.3 81 50.6
Actinidia06069 Actinidia chinensis HOM05D003501 ORTHO05D004388 3.4e-14 82.8 123 39.0
MD11G1147100 Malus domestica HOM05D003501 ORTHO05D004388 3.7e-13 79.3 70 52.9
SMO112G0081 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 8.3e-13 78.2 63 57.1
SMO353G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.1e-12 77.8 135 39.3
SMO112G0124 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.1e-12 75.9 126 36.5
Cfa022309 Carpinus fangiana HOM05D003501 ORTHO05D004388 1.2e-11 74.3 148 35.1
HPP92_000031 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.0e-10 71.2 76 44.7
SMO364G0671 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.1e-08 63.5 61 44.3
SMO265G0024 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.8e-08 63.2 51 51.0
SMO340G0317 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.8e-07 58.5 51 47.1
SMO004G0007 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.4e-06 56.2 49 46.9
SMO146G0031 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.7e-06 55.5 61 42.6
SMO194G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 9.8e-06 54.7 50 44.0


User provided reference genes

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