Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 7.2e-276 953.7 658 100.0
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 6.5e-245 850.9 658 91.5
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 3.0e-221 772.3 665 82.4
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 9.0e-194 681.0 677 62.9
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 2.4e-191 672.9 723 59.6
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 5.8e-185 651.7 694 60.2
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 3.8e-184 649.0 683 60.8
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 6.4e-184 648.3 683 60.3
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 5.3e-178 628.6 643 61.6
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 1.4e-170 604.0 623 64.8
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 2.8e-163 579.7 393 84.0
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 1.8e-154 550.4 675 54.1
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 4.1e-154 549.3 678 50.3
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 4.7e-150 535.8 684 53.1
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 1.6e-145 520.8 673 49.9
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 4.5e-145 519.2 712 44.9
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 5.9e-145 518.8 674 48.7
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 7.7e-145 518.5 685 47.9
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 1.7e-144 517.3 686 52.0
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 2.2e-144 516.9 657 51.8
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 1.8e-141 507.3 666 47.6
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 1.8e-141 507.3 424 65.8
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 5.2e-141 505.8 666 51.7
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 8.8e-141 505.0 676 49.7
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 2.8e-139 500.0 679 47.6
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 4.8e-139 499.2 672 50.3
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 1.4e-138 497.7 787 47.6
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 1.7e-136 490.7 421 68.9
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 5.0e-136 489.2 387 73.6
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 3.2e-135 486.5 419 62.1
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 2.1e-134 483.8 667 46.9
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 1.0e-133 481.5 690 46.4
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 1.0e-133 481.5 356 71.9
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 1.0e-133 481.5 677 46.1
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 1.4e-133 481.1 683 49.6
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 3.0e-133 479.9 701 45.9
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 3.0e-133 479.9 304 74.7
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 4.0e-133 479.6 685 47.2
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 5.2e-133 479.2 407 68.6
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 1.2e-132 478.0 690 48.3
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 1.5e-132 477.6 387 65.9
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 1.7e-131 474.2 304 74.7
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 2.2e-131 473.8 671 49.6
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.8e-131 473.4 687 45.7
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 3.7e-131 473.0 377 68.4
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 4.8e-131 472.6 743 45.0
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 1.4e-130 471.1 386 71.5
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 2.4e-130 470.3 386 71.8
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 4.1e-130 469.5 403 67.2
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 2.2e-128 463.8 367 70.0
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 2.9e-128 463.4 302 72.2
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 2.9e-128 463.4 669 48.0
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 6.5e-128 462.2 302 72.8
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 5.5e-127 459.1 386 66.3
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 9.4e-127 458.4 306 72.2
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 2.7e-126 456.8 415 62.7
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 4.0e-125 453.0 307 70.0
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 5.2e-125 452.6 375 62.9
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 3.4e-124 449.9 366 62.0
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 2.8e-123 446.8 303 69.6
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 4.9e-123 446.0 652 42.6
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 1.4e-122 444.5 383 65.3
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 4.1e-122 443.0 366 62.6
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 5.4e-122 442.6 538 65.8
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 5.9e-121 439.1 414 57.5
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 1.3e-120 438.0 763 45.1
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 1.7e-120 437.6 384 67.2
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.1e-119 434.9 654 44.8
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 4.3e-119 433.0 274 74.5
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 1.2e-118 431.4 303 68.0
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.8e-117 427.6 302 68.5
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 5.2e-117 426.0 670 44.2
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 3.4e-116 423.3 392 64.8
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 7.5e-116 422.2 302 68.2
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 9.8e-116 421.8 298 67.4
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 2.9e-115 420.2 302 67.5
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 1.4e-114 417.9 401 63.3
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.4e-114 417.9 667 44.5
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 1.8e-114 417.5 304 65.5
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 3.2e-114 416.8 400 62.8
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 2.0e-113 414.1 401 61.3
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 2.0e-113 414.1 401 61.3
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 4.6e-113 412.9 665 44.8
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 7.8e-113 412.1 305 65.9
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 1.0e-112 411.8 401 61.1
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 2.5e-111 407.1 304 66.1
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 4.3e-111 406.4 356 61.0
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 2.3e-109 400.6 393 56.7
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 2.4e-106 390.6 712 41.3
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 3.5e-105 386.7 396 59.8
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 4.3e-103 379.8 399 51.4
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 1.2e-102 378.3 398 54.5
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.1e-101 375.2 395 57.0
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 2.3e-101 374.0 299 59.9
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 5.2e-101 372.9 299 60.5
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 9.8e-100 368.6 302 61.9
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 3.7e-99 366.7 298 58.7
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 6.4e-99 365.9 397 54.4
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 1.4e-98 364.8 397 49.9
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 1.4e-98 364.8 397 49.9
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 2.7e-97 360.5 397 53.4
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 1.6e-94 351.3 344 54.7
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 3.6e-94 350.1 655 40.9
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 3.1e-93 347.1 301 55.1
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 6.4e-91 339.3 394 47.7
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 8.1e-86 322.4 633 39.0
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 6.9e-85 319.3 301 56.1
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 1.2e-84 318.5 297 58.6
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 9.3e-82 308.9 591 39.1
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 6.9e-77 292.7 328 46.0
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.2e-75 287.7 620 37.4
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 8.4e-75 285.8 328 43.3
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 1.8e-69 268.1 325 41.5
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 1.5e-68 265.0 550 41.1
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 1.2e-65 255.4 189 66.7
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 6.0e-65 253.1 263 62.4
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 2.5e-63 247.7 272 55.5
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 3.7e-54 217.2 259 44.4
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 5.0e-51 206.8 124 81.5
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 2.6e-44 184.5 378 31.5
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 3.1e-37 161.0 279 38.0
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 2.6e-31 141.4 184 44.0
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 4.4e-31 140.6 107 64.5
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 2.3e-24 118.2 72 76.4
Psat7g050000 Pisum sativum HOM05D005778 ORTHO05D007245 2.0e-23 115.2 144 52.8
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 8.5e-19 99.8 113 50.4
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 9.4e-18 96.3 147 42.2
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 8.8e-16 89.7 62 62.9
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 4.5e-12 77.4 59 59.3
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 2.9e-11 74.7 61 52.5
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 2.8e-09 68.2 45 75.6
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 6.1e-09 67.0 54 57.4
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 1.4e-08 65.9 75 46.7


User provided reference genes

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