Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 8.4e-48 193.4 97 100.0
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 1.3e-27 126.3 136 55.1
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 2.0e-25 119.0 143 51.7
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 7.1e-23 110.5 135 51.1
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 3.5e-22 108.2 124 52.4
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 1.3e-21 106.3 149 47.0
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 1.3e-21 106.3 137 50.4
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 2.3e-21 105.5 136 49.3
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 2.3e-21 105.5 137 48.2
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 5.6e-20 100.9 141 45.4
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 2.1e-19 99.0 142 45.1
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 2.8e-19 98.6 142 44.4
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 8.2e-19 97.1 150 43.3
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 1.4e-18 96.3 136 46.3
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 1.4e-15 86.3 77 53.2
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 9.3e-15 83.6 135 43.0
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 1.6e-14 82.8 131 42.0
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 3.5e-14 81.6 136 37.5
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 1.0e-13 80.1 46 84.8
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 2.3e-13 79.0 138 41.3
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 2.3e-13 79.0 46 82.6
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 3.9e-13 78.2 69 59.4
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 3.9e-13 78.2 46 82.6
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 6.7e-13 77.4 46 80.4
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 6.7e-13 77.4 46 80.4
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 8.7e-13 77.0 66 62.1
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 8.7e-13 77.0 46 82.6
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 3.3e-12 75.1 128 39.1
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 3.3e-12 75.1 48 75.0
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 3.3e-12 75.1 48 75.0
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 3.3e-12 75.1 128 37.5
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 5.7e-12 74.3 84 51.2
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 5.7e-12 74.3 48 72.9
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 5.7e-12 74.3 46 76.1
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 7.4e-12 73.9 46 71.7
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 9.7e-12 73.6 46 76.1
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 9.7e-12 73.6 46 76.1
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 9.7e-12 73.6 69 53.6
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 9.7e-12 73.6 48 70.8
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 9.7e-12 73.6 46 76.1
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 1.3e-11 73.2 46 76.1
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 1.6e-11 72.8 123 37.4
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 2.2e-11 72.4 48 70.8
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 2.2e-11 72.4 46 73.9
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 2.8e-11 72.0 46 73.9
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 2.8e-11 72.0 46 73.9
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 2.8e-11 72.0 46 73.9
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.8e-11 72.0 48 72.9
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 3.7e-11 71.6 48 70.8
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 3.7e-11 71.6 66 57.6
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 3.7e-11 71.6 61 54.1
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 4.8e-11 71.2 46 71.7
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 4.8e-11 71.2 60 56.7
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 4.8e-11 71.2 48 68.8
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 6.3e-11 70.9 46 73.9
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 8.2e-11 70.5 46 73.9
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 8.2e-11 70.5 46 73.9
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 1.1e-10 70.1 46 69.6
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 1.1e-10 70.1 105 41.9
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.4e-10 69.7 102 41.2
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.4e-10 69.7 61 52.5
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 1.8e-10 69.3 46 69.6
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.8e-10 69.3 131 38.2
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 2.4e-10 68.9 46 69.6
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 2.4e-10 68.9 42 76.2
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 3.1e-10 68.6 45 71.1
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 4.1e-10 68.2 57 54.4
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 4.1e-10 68.2 46 69.6
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 5.3e-10 67.8 46 71.7
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 5.3e-10 67.8 69 50.7
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 5.3e-10 67.8 48 68.8
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 6.9e-10 67.4 46 67.4
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 6.9e-10 67.4 60 53.3
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 6.9e-10 67.4 60 53.3
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 9.0e-10 67.0 46 67.4
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 9.0e-10 67.0 46 69.6
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 9.0e-10 67.0 46 69.6
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 9.0e-10 67.0 46 67.4
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.2e-09 66.6 46 69.6
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 1.2e-09 66.6 69 50.7
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 1.5e-09 66.2 46 67.4
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 1.5e-09 66.2 128 35.9
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.5e-09 66.2 48 66.7
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.6e-09 65.5 67 52.2
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 4.5e-09 64.7 63 57.1
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 5.9e-09 64.3 48 64.6
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.0e-08 63.5 112 36.6
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.0e-08 63.5 59 50.8
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.3e-08 63.2 46 63.0
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.3e-08 63.2 45 62.2
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 1.3e-08 63.2 40 75.0
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.3e-08 63.2 46 67.4
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 1.7e-08 62.8 43 67.4
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 1.7e-08 62.8 43 67.4
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 1.7e-08 62.8 43 67.4
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 1.7e-08 62.8 42 69.0
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 2.2e-08 62.4 44 68.2
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.2e-08 62.4 46 63.0
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.2e-08 62.4 48 60.4
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 3.8e-08 61.6 46 65.2
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 8.5e-08 60.5 46 67.4
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 1.1e-07 60.1 46 60.9
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 1.1e-07 60.1 46 60.9
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 2.5e-07 58.9 45 66.7
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 2.5e-07 58.9 45 66.7
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 2.5e-07 58.9 45 66.7
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 2.5e-07 58.9 45 66.7
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 4.2e-07 58.2 61 45.9
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 4.2e-07 58.2 40 67.5
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 7.2e-07 57.4 47 61.7
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 7.2e-07 57.4 38 68.4
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 7.2e-07 57.4 46 63.0
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 7.2e-07 57.4 46 63.0
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 7.2e-07 57.4 46 63.0
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 7.2e-07 57.4 46 63.0
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 9.3e-07 57.0 61 47.5
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 9.3e-07 57.0 61 47.5
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 1.2e-06 56.6 47 59.6
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.2e-06 56.6 123 33.3
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.2e-06 56.6 40 70.0
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 1.6e-06 56.2 45 64.4
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 2.1e-06 55.8 46 60.9
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 2.1e-06 55.8 46 60.9
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 2.1e-06 55.8 46 63.0
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 2.7e-06 55.5 43 58.1
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 2.7e-06 55.5 43 62.8
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 3.6e-06 55.1 46 56.5
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 4.6e-06 54.7 38 65.8
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 4.6e-06 54.7 60 51.7
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 4.6e-06 54.7 46 56.5
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 4.6e-06 54.7 46 56.5
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 4.6e-06 54.7 46 56.5
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 4.6e-06 54.7 134 29.9
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 7.9e-06 53.9 37 67.6
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 7.9e-06 53.9 46 52.2
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 7.9e-06 53.9 49 53.1


User provided reference genes

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