Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 1.2e-202 709.5 348 100.0
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 5.8e-184 647.5 348 91.7
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 1.6e-170 602.8 348 85.3
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 2.0e-168 595.9 348 85.3
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 4.2e-158 561.6 344 77.9
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 5.5e-158 561.2 350 78.3
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.8e-156 556.2 341 77.4
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 3.0e-156 555.4 344 76.7
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 3.9e-156 555.1 347 78.1
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 3.3e-155 552.0 348 77.3
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 6.3e-154 547.7 347 77.8
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 8.2e-154 547.4 356 74.4
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 1.4e-153 546.6 347 76.7
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 2.4e-153 545.8 344 77.0
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 4.1e-153 545.0 334 77.2
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 4.1e-153 545.0 340 77.1
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 6.9e-153 544.3 355 74.1
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 1.0e-151 540.4 345 75.9
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.3e-151 540.0 346 74.9
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 2.2e-151 539.3 347 76.1
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 2.2e-151 539.3 339 78.2
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.8e-151 538.5 339 75.5
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.5e-150 535.8 346 74.6
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 5.5e-150 534.6 340 74.7
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 7.2e-150 534.3 320 78.4
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 7.2e-150 534.3 338 76.6
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 9.4e-150 533.9 309 81.6
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.2e-149 533.5 340 75.6
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.2e-149 533.5 347 75.5
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.6e-149 533.1 347 75.2
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 1.6e-149 533.1 344 75.6
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 2.7e-149 532.3 330 76.4
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 2.7e-149 532.3 335 76.1
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 2.7e-149 532.3 349 74.8
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.7e-149 532.3 341 76.2
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 2.7e-149 532.3 346 74.3
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.6e-149 531.6 339 76.4
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 1.0e-148 530.4 347 74.1
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 2.3e-148 529.3 344 75.9
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 5.1e-148 528.1 340 74.7
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.5e-147 526.6 332 77.1
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 2.5e-147 525.8 340 72.9
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.5e-147 525.8 347 73.5
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 3.3e-147 525.4 336 74.7
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 5.7e-147 524.6 337 76.0
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 7.4e-147 524.2 347 72.3
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 1.3e-146 523.5 347 72.9
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 1.3e-146 523.5 340 72.1
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 1.7e-146 523.1 349 71.9
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 1.7e-146 523.1 349 71.9
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 2.2e-146 522.7 349 71.9
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 2.2e-146 522.7 349 71.9
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 2.2e-146 522.7 349 71.9
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 2.2e-146 522.7 347 73.2
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.2e-146 522.7 344 74.7
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 3.7e-146 521.9 346 73.4
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 4.8e-146 521.5 348 73.0
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 1.1e-145 520.4 346 73.4
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 1.8e-145 519.6 336 74.1
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 3.1e-145 518.8 309 78.0
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 4.1e-145 518.5 347 72.0
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 4.1e-145 518.5 338 73.7
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 5.3e-145 518.1 359 71.3
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 5.3e-145 518.1 340 72.1
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 5.3e-145 518.1 347 72.0
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 6.9e-145 517.7 345 74.5
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.8e-143 511.9 340 72.6
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 1.1e-142 510.4 347 72.6
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.4e-142 510.0 333 72.7
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 2.5e-142 509.2 324 73.5
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 3.2e-142 508.8 343 70.8
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 5.5e-142 508.1 351 72.6
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 1.2e-141 506.9 308 75.3
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 2.1e-141 506.1 343 72.9
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 2.1e-141 506.1 323 73.1
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 4.7e-141 505.0 353 72.2
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 4.7e-141 505.0 346 73.7
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 4.7e-141 505.0 308 75.6
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 7.9e-141 504.2 343 70.6
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 7.9e-141 504.2 343 72.0
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 5.1e-140 501.5 333 71.5
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.5e-139 500.0 327 71.3
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 2.0e-139 499.6 327 71.3
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 4.4e-139 498.4 338 69.5
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 5.3e-137 491.5 328 70.1
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 7.0e-137 491.1 348 71.8
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 2.0e-136 489.6 323 71.2
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.3e-135 486.9 341 70.7
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 1.7e-135 486.5 307 73.3
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.5e-134 483.4 331 70.4
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.2e-134 482.3 334 71.0
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 3.6e-133 478.8 324 73.1
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 4.7e-133 478.4 308 75.3
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.1e-131 473.8 390 62.1
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 3.3e-131 472.2 347 66.3
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 4.4e-131 471.9 347 65.4
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 9.7e-131 470.7 341 68.3
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 2.2e-130 469.5 316 72.2
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 2.2e-130 469.5 323 70.9
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 4.8e-130 468.4 347 66.6
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 4.8e-130 468.4 320 71.9
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 8.2e-130 467.6 321 72.3
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 2.4e-129 466.1 286 75.9
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 2.0e-128 463.0 355 64.8
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.0e-127 460.7 318 69.8
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 1.5e-126 456.8 349 63.3
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 4.2e-126 455.3 356 65.7
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 6.1e-125 451.4 335 64.2
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 1.4e-124 450.3 343 64.7
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 3.0e-124 449.1 267 79.0
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.0e-124 448.7 305 67.9
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 5.7e-123 444.9 306 67.6
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.8e-122 442.6 320 67.5
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 7.0e-121 438.0 283 72.1
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 1.2e-120 437.2 347 64.6
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 3.5e-120 435.6 263 78.3
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 1.7e-119 433.3 330 62.7
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.2e-117 427.2 303 64.4
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 3.6e-117 425.6 276 73.6
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 2.2e-114 416.4 245 80.8
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 1.3e-111 407.1 333 59.2
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 6.6e-111 404.8 313 61.3
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 6.6e-111 404.8 289 67.8
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 6.1e-109 398.3 318 61.9
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 5.6e-102 375.2 308 62.0
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 8.9e-100 367.9 398 50.0
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 9.2e-97 357.8 222 74.8
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.6e-93 347.1 269 64.3
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 4.1e-89 332.4 244 64.8
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.1e-89 332.4 242 62.4
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 6.8e-84 315.1 317 51.4
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 3.4e-83 312.8 224 64.7
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 4.7e-77 292.4 268 56.3
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.0e-71 274.6 291 50.2
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 4.3e-70 269.2 182 73.6
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 2.4e-68 263.5 170 71.2
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 9.9e-59 231.5 141 75.9
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 9.6e-54 214.9 130 76.9
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.6e-53 214.2 183 60.1
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 1.4e-44 184.5 107 78.5
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 7.6e-43 178.7 102 83.3
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 3.8e-34 149.8 171 53.2
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 6.1e-24 115.9 75 66.7
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 3.0e-23 113.6 64 81.2
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 8.2e-21 105.5 66 72.7
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 7.0e-20 102.4 74 64.9
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 4.0e-15 86.7 78 53.8
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 5.2e-15 86.3 54 75.9
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 4.8e-13 79.7 74 55.4
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 1.4e-12 78.2 197 29.4
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 1.6e-11 74.7 83 54.2
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 1.7e-10 71.2 208 28.8
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.2e-10 70.9 41 73.2
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 1.9e-09 67.8 170 30.0
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 5.5e-09 66.2 186 28.5
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 2.7e-08 63.9 78 51.3
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 3.6e-08 63.5 207 25.6
Lsat_1_v5_gn_6_31721 Lactuca sativa HOM05D002024 ORTHO05D004352 1.8e-07 61.2 214 24.3
Medtr7g086370 Medicago truncatula HOM05D002024 ORTHO05D004352 1.2e-06 58.5 157 28.0
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 2.6e-06 57.4 205 25.4
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 2.6e-06 57.4 205 25.4
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 2.6e-06 57.4 205 24.9
TPR.G17861 Trifolium pratense HOM05D002024 ORTHO05D004352 2.6e-06 57.4 157 27.4
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 3.4e-06 57.0 215 25.1
AT1G54440 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 4.4e-06 56.6 154 27.3
MELO3C008822.2 Cucumis melo HOM05D002024 ORTHO05D004352 4.4e-06 56.6 154 27.3
HanXRQChr07g0197171 Helianthus annuus HOM05D002024 ORTHO05D004352 4.4e-06 56.6 207 24.2
CsaV3_4G012120 Cucumis sativus L. HOM05D002024 ORTHO05D004352 7.5e-06 55.8 153 27.5
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 9.8e-06 55.5 153 29.4
SMO351G0038 Selaginella moellendorffii HOM05D002024 ORTHO05D004352 9.8e-06 55.5 155 27.1


User provided reference genes

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