Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 5.5e-98 360.9 175 100.0
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 6.9e-93 344.0 194 88.7
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 4.1e-85 318.2 194 79.9
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 7.7e-84 313.9 194 79.4
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 1.0e-83 313.5 194 78.4
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 1.3e-83 313.2 194 79.4
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 5.0e-83 311.2 194 78.4
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 6.5e-83 310.8 194 77.3
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 8.5e-83 310.5 194 77.3
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 8.5e-83 310.5 193 76.7
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 2.5e-82 308.9 194 76.3
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 3.2e-82 308.5 194 77.8
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 3.2e-82 308.5 194 76.3
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 4.2e-82 308.1 194 75.3
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 9.4e-82 307.0 194 75.3
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 1.2e-81 306.6 194 74.7
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 1.6e-81 306.2 194 76.8
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 1.6e-81 306.2 194 75.3
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 2.7e-81 305.4 194 75.3
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 3.6e-81 305.1 194 74.7
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 4.6e-81 304.7 194 74.7
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 6.1e-81 304.3 194 74.7
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 6.1e-81 304.3 194 75.8
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 7.9e-81 303.9 194 74.2
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 7.9e-81 303.9 194 75.8
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 1.0e-80 303.5 194 73.7
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 1.0e-80 303.5 194 73.7
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 1.0e-80 303.5 194 73.7
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 1.0e-80 303.5 194 75.3
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 1.4e-80 303.1 194 74.2
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 1.4e-80 303.1 194 74.7
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 1.8e-80 302.8 194 76.8
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 1.8e-80 302.8 194 75.3
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 2.3e-80 302.4 194 75.8
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 3.0e-80 302.0 194 73.2
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 3.9e-80 301.6 194 74.7
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 5.1e-80 301.2 194 74.2
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 5.1e-80 301.2 200 75.0
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 5.1e-80 301.2 194 73.7
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 5.1e-80 301.2 194 73.7
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 6.7e-80 300.8 194 74.2
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 6.7e-80 300.8 194 75.3
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 6.7e-80 300.8 194 73.7
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 8.8e-80 300.4 194 74.2
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 8.8e-80 300.4 194 73.7
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 1.1e-79 300.1 194 73.2
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.1e-79 300.1 194 72.7
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 2.0e-79 299.3 194 74.7
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 2.0e-79 299.3 194 73.7
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 2.5e-79 298.9 194 74.7
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 3.3e-79 298.5 194 73.2
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 4.3e-79 298.1 194 74.7
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 7.4e-79 297.4 194 74.7
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 9.7e-79 297.0 194 73.2
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 2.2e-78 295.8 194 73.7
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 3.7e-78 295.0 188 77.1
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 3.7e-78 295.0 194 73.2
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 3.7e-78 295.0 195 73.3
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 6.3e-78 294.3 194 73.7
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 8.2e-78 293.9 194 70.6
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 1.1e-77 293.5 194 71.6
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 1.4e-77 293.1 194 73.2
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 1.8e-77 292.7 194 71.1
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 1.8e-77 292.7 187 74.9
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 2.4e-77 292.4 194 71.1
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 2.4e-77 292.4 194 71.1
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 2.4e-77 292.4 187 74.3
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 2.4e-77 292.4 214 68.2
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 2.4e-77 292.4 194 71.1
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 3.1e-77 292.0 194 71.6
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 3.1e-77 292.0 194 71.6
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 3.1e-77 292.0 194 71.6
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 3.1e-77 292.0 194 72.7
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 5.3e-77 291.2 225 65.3
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 5.3e-77 291.2 214 67.8
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 6.9e-77 290.8 194 71.1
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 9.1e-77 290.4 194 71.1
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 9.1e-77 290.4 194 70.6
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 9.1e-77 290.4 214 67.3
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 1.2e-76 290.0 194 72.2
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 2.0e-76 289.3 194 70.1
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 4.5e-76 288.1 194 70.6
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 4.5e-76 288.1 210 68.6
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 5.9e-76 287.7 194 72.2
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 8.5e-75 283.9 235 61.3
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 1.6e-73 279.6 194 68.0
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 7.9e-73 277.3 193 70.5
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 1.4e-72 276.6 194 67.5
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 5.1e-72 274.6 210 66.2
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 6.7e-72 274.2 178 73.0
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 6.7e-72 274.2 194 70.6
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 6.7e-72 274.2 194 66.0
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 1.1e-71 273.5 176 72.7
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 2.6e-71 272.3 194 65.5
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 6.3e-70 267.7 194 64.9
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 2.4e-69 265.8 173 74.0
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.2e-68 263.5 194 67.0
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 2.6e-68 262.3 161 78.9
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 1.0e-67 260.4 274 50.7
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 1.3e-67 260.0 297 48.5
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 2.2e-67 259.2 194 62.9
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 2.1e-65 252.7 195 59.5
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 3.6e-65 251.9 162 75.9
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 1.8e-64 249.6 160 76.2
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 1.8e-61 239.6 172 66.9
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 9.1e-61 237.3 283 48.1
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 2.2e-59 232.6 120 90.0
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 5.0e-59 231.5 120 89.2
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 2.1e-57 226.1 120 87.5
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 5.4e-53 211.5 140 72.1
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 4.9e-46 188.3 178 53.4
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 2.9e-43 179.1 134 65.7
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 2.1e-41 172.9 93 87.1
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 5.2e-40 168.3 191 44.0
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 1.2e-39 167.2 123 66.7
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 1.5e-39 166.8 96 79.2
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 9.8e-39 164.1 123 65.0
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 3.3e-34 149.1 175 45.1
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 1.4e-32 143.7 114 63.2
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 1.8e-32 143.3 76 84.2
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 5.2e-32 141.7 88 78.4
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 5.2e-32 141.7 88 78.4
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 8.9e-32 141.0 73 86.3
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 8.9e-32 141.0 71 88.7
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 2.0e-31 139.8 114 58.8
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 7.5e-31 137.9 73 86.3
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 7.5e-31 137.9 73 86.3
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 7.5e-31 137.9 73 86.3
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 7.5e-31 137.9 110 62.7
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 3.7e-30 135.6 122 54.1
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 1.1e-29 134.0 179 40.2
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 7.8e-28 127.9 64 89.1
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 3.1e-24 115.9 89 65.2
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.5e-18 96.3 59 78.0
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.2e-15 87.4 81 56.8
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 8.4e-14 81.3 54 70.4
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.3e-11 73.9 57 59.6
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 3.0e-11 72.8 40 82.5
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 2.5e-10 69.7 124 37.1
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 5.8e-07 58.5 94 36.2
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 5.8e-07 58.5 94 36.2
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 5.8e-07 58.5 90 37.8


User provided reference genes

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