Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 0.0e+00 2156.7 1224 100.0
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 0.0e+00 2085.8 1251 95.0
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 5.0e-299 1031.6 1256 49.0
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 1.2e-295 1020.4 1268 48.7
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 1.1e-272 944.1 1248 46.6
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 1.3e-265 920.6 1282 49.8
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 2.2e-262 909.8 1258 45.4
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 8.4e-262 907.9 1256 45.1
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 1.7e-259 900.2 1270 45.0
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 4.8e-257 892.1 1267 43.7
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 4.0e-256 889.0 1262 43.4
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 5.3e-256 888.6 1231 45.6
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 2.4e-253 879.8 1272 44.3
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 3.2e-253 879.4 1284 46.0
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 3.5e-252 875.9 1296 43.8
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 1.0e-251 874.4 1248 45.3
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 6.9e-248 861.7 1299 42.6
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 2.0e-247 860.1 1283 44.0
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 5.8e-247 858.6 1255 44.9
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 6.5e-246 855.1 1310 43.1
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 1.9e-245 853.6 1248 45.9
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 3.8e-238 829.3 1254 44.6
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 2.5e-237 826.6 1260 43.1
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 7.1e-237 825.1 1042 47.4
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 5.1e-235 818.9 1046 46.9
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 6.7e-235 818.5 958 50.9
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 9.7e-234 814.7 1277 43.1
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 4.8e-233 812.4 1284 41.5
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 5.0e-230 802.4 1246 44.7
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 6.5e-230 802.0 1290 41.2
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 1.1e-229 801.2 1266 41.9
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 1.4e-229 800.8 1269 43.6
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.4e-229 800.8 1283 41.1
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 3.6e-228 796.2 1273 42.4
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 3.9e-227 792.7 1255 42.4
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 1.7e-225 787.3 1275 42.7
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 1.1e-224 784.6 1185 43.3
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 6.9e-224 781.9 1281 41.0
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 2.0e-223 780.4 1273 41.8
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.2e-222 776.9 1293 40.6
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 1.9e-221 773.9 1295 40.0
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 1.9e-221 773.9 1250 42.9
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 4.2e-221 772.7 1310 40.6
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 7.2e-221 771.9 1270 42.4
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 2.7e-220 770.0 1251 41.1
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 2.7e-220 770.0 1258 41.1
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 2.3e-219 766.9 1187 42.8
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 2.3e-219 766.9 1259 41.5
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 3.0e-219 766.5 631 64.2
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 2.6e-218 763.5 1305 40.0
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.3e-217 761.1 631 61.6
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 1.1e-216 758.1 1266 40.7
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.8e-216 757.3 1275 42.4
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 3.1e-216 756.5 1254 41.1
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 9.1e-216 755.0 1213 41.6
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 2.0e-215 753.8 1284 39.4
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.0e-215 753.8 1341 39.1
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 2.0e-215 753.8 1246 42.5
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 4.5e-215 752.7 1245 40.6
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 1.9e-213 747.3 1223 41.3
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 2.5e-213 746.9 1209 41.0
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 2.5e-213 746.9 1032 44.5
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 8.8e-211 738.4 952 46.1
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 3.3e-210 736.5 1273 40.8
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 9.7e-210 734.9 1253 42.0
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 1.8e-208 730.7 1264 39.4
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 5.3e-208 729.2 1317 38.0
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 3.5e-207 726.5 1281 39.6
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 2.9e-206 723.4 1052 43.0
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 5.0e-206 722.6 983 45.1
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 6.5e-206 722.2 1044 44.3
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 8.5e-206 721.8 1269 39.7
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 1.2e-204 718.0 1238 39.6
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 1.2e-204 718.0 1265 39.8
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 6.1e-204 715.7 1310 38.5
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 2.0e-202 710.7 1241 39.0
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 4.4e-202 709.5 1332 37.1
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 3.7e-201 706.4 1283 38.5
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 6.3e-201 705.7 979 44.0
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 2.4e-200 703.7 645 57.2
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 4.1e-200 703.0 946 44.7
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 5.4e-200 702.6 1254 39.6
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 7.0e-200 702.2 1379 36.5
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 1.2e-199 701.4 943 46.1
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 1.0e-198 698.4 1271 38.2
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 1.0e-198 698.4 1274 39.3
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 2.2e-198 697.2 695 54.4
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 3.2e-197 693.3 1264 38.9
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 2.1e-196 690.6 1279 38.5
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 5.2e-195 686.0 1282 37.7
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 2.6e-194 683.7 1264 37.9
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 4.4e-194 682.9 1209 39.5
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 1.3e-193 681.4 1281 37.5
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 7.7e-191 672.2 1293 37.5
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 2.1e-188 664.1 1287 38.0
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 2.1e-188 664.1 1287 38.0
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 2.3e-182 644.0 1192 38.4
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 2.3e-182 644.0 953 43.7
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 3.9e-174 616.7 1169 39.6
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.6e-167 594.7 987 40.8
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 1.5e-165 588.2 1026 39.9
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 1.5e-162 578.2 1183 37.8
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 3.8e-153 547.0 648 48.5
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 5.3e-147 526.6 557 50.8
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 1.5e-146 525.0 612 49.3
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.1e-141 508.8 514 55.8
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.3e-137 495.4 429 61.5
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 1.1e-136 492.3 1004 36.1
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.6e-119 435.3 793 38.2
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 3.3e-117 427.6 875 36.5
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 1.4e-112 412.1 922 35.6
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 1.7e-108 398.7 631 39.8
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 1.1e-107 396.0 699 39.1
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 3.9e-102 377.5 636 38.2
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 7.7e-98 363.2 340 58.5
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 3.5e-90 337.8 313 58.5
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 3.2e-88 331.3 636 38.7
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.2e-79 302.8 319 54.2
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 6.1e-79 300.4 306 55.6
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 9.2e-75 286.6 476 41.4
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 1.0e-70 273.1 269 53.5
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.0e-69 268.9 768 32.0
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 2.4e-67 261.9 356 44.1
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 8.6e-65 253.4 430 35.1
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 1.1e-59 236.5 995 26.3
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 7.0e-59 233.8 995 26.2
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 3.9e-33 148.3 619 27.8
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 6.6e-33 147.5 580 31.0
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 7.4e-24 117.5 433 27.9
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 2.8e-23 115.5 296 30.1
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 1.5e-21 109.8 273 29.7
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.6e-18 99.8 646 33.4
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 1.5e-08 66.6 175 32.6
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 2.1e-07 62.8 52 57.7
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 8.2e-07 60.8 143 35.0
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 9.0e-06 57.4 113 39.8


User provided reference genes

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