Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 7.8e-236 820.1 415 100.0
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 2.9e-230 801.6 416 97.8
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 5.9e-191 671.0 415 80.7
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 7.2e-189 664.1 417 79.9
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.3e-187 659.8 421 80.0
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 1.8e-187 659.4 428 78.5
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 2.8e-185 652.1 415 78.6
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 6.9e-184 647.5 418 78.0
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 1.2e-183 646.7 419 78.0
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 2.6e-183 645.6 415 77.6
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 7.7e-183 644.0 416 78.1
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 1.3e-182 643.3 363 85.4
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 8.5e-182 640.6 356 86.2
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 8.5e-182 640.6 412 79.1
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.1e-181 640.2 356 86.2
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 1.4e-181 639.8 357 87.1
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.4e-181 639.8 421 77.0
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 2.5e-181 639.0 417 77.2
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 2.5e-181 639.0 421 76.7
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 3.2e-181 638.6 363 85.1
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 1.2e-180 636.7 356 85.4
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 1.6e-180 636.3 415 75.9
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 2.7e-180 635.6 404 79.5
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 1.0e-179 633.6 365 83.8
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 1.8e-179 632.9 378 81.2
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 2.3e-179 632.5 399 79.2
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 1.1e-178 630.2 440 73.0
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 1.1e-178 630.2 382 80.9
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 2.0e-178 629.4 415 76.6
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 2.0e-178 629.4 359 84.7
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 2.5e-178 629.0 425 76.5
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 4.3e-178 628.2 361 83.7
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 4.3e-178 628.2 416 77.4
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 5.7e-178 627.9 415 76.9
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 5.7e-178 627.9 355 85.1
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 9.7e-178 627.1 415 76.9
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 1.1e-176 623.6 354 85.0
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 1.4e-176 623.2 399 78.4
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 1.8e-176 622.9 415 76.9
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 2.4e-176 622.5 354 83.6
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 6.9e-176 620.9 418 75.6
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 9.1e-176 620.5 355 83.7
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 1.5e-175 619.8 420 76.2
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 1.5e-175 619.8 415 77.1
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 2.0e-175 619.4 415 76.6
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 2.0e-175 619.4 415 76.6
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 4.5e-175 618.2 358 83.8
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 5.9e-175 617.8 359 83.8
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 7.7e-175 617.5 403 75.9
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 7.7e-175 617.5 462 71.0
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 1.0e-174 617.1 419 74.7
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 2.2e-174 615.9 357 84.0
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 3.8e-174 615.1 416 76.4
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 5.0e-174 614.8 357 84.0
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 6.5e-174 614.4 416 76.4
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 8.5e-174 614.0 358 82.7
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 1.4e-173 613.2 437 73.2
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 2.7e-172 609.0 423 74.2
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 2.7e-172 609.0 358 81.3
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 3.6e-172 608.6 357 82.9
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 7.9e-172 607.4 439 72.0
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 5.1e-171 604.7 419 73.7
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 2.0e-170 602.8 420 74.0
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 2.6e-170 602.4 354 81.9
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 4.4e-170 601.7 363 81.5
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 7.4e-170 600.9 411 75.9
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 9.7e-170 600.5 417 74.8
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 3.7e-169 598.6 415 73.5
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 6.3e-169 597.8 356 81.7
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 1.1e-168 597.0 385 79.2
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 1.8e-168 596.3 418 74.6
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 1.8e-168 596.3 415 75.4
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 4.1e-168 595.1 414 73.7
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 1.2e-167 593.6 411 73.0
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 2.6e-167 592.4 418 72.7
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 3.5e-167 592.0 458 66.6
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 1.3e-166 590.1 342 83.0
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 1.7e-166 589.7 422 73.9
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 3.8e-166 588.6 355 80.8
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 1.5e-165 586.6 413 71.4
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 3.2e-165 585.5 359 79.4
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 4.2e-165 585.1 386 75.4
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 9.4e-165 583.9 360 80.0
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 2.7e-164 582.4 355 81.4
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 3.6e-164 582.0 402 73.9
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.4e-163 580.1 442 69.7
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 2.3e-163 579.3 404 71.5
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 4.4e-162 575.1 402 73.9
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 5.7e-162 574.7 415 71.1
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 7.5e-162 574.3 417 72.2
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 4.8e-161 571.6 416 72.8
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 1.1e-160 570.5 356 77.5
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.4e-160 570.1 323 85.1
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.4e-160 570.1 323 85.1
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 4.5e-159 565.1 429 68.1
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 1.6e-156 556.6 375 73.6
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 2.1e-156 556.2 350 79.1
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 2.7e-156 555.8 359 73.8
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 4.8e-153 545.0 394 70.3
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 2.0e-151 539.7 376 72.1
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 7.7e-151 537.7 551 55.2
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 2.9e-150 535.8 447 62.4
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 3.6e-148 528.9 539 55.3
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 5.7e-146 521.5 419 66.1
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 1.3e-145 520.4 359 69.1
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 1.7e-145 520.0 354 72.0
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 5.0e-142 508.4 357 70.9
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 3.6e-132 475.7 485 54.8
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 1.2e-119 434.1 357 60.2
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.0e-118 431.0 444 56.8
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 2.5e-117 426.4 332 64.8
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 7.1e-112 408.3 209 92.3
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 1.1e-107 394.4 358 55.6
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 1.4e-107 394.0 358 54.7
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 6.9e-107 391.7 203 91.6
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 3.1e-75 286.6 292 49.0
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 8.2e-60 235.3 351 38.5
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 1.4e-56 224.6 114 92.1
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 3.6e-55 219.9 122 83.6
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 1.7e-49 201.1 181 61.3
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 3.1e-43 180.3 111 79.3
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 3.4e-37 160.2 211 46.9
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 3.0e-30 137.1 98 67.3
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 6.8e-30 136.0 69 88.4
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 5.4e-27 126.3 73 87.7
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 1.3e-25 121.7 85 70.6
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 1.9e-24 117.9 84 69.0
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 2.2e-20 104.4 80 63.8
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 5.9e-18 96.3 53 81.1
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 1.1e-16 92.0 92 56.5
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 1.7e-12 78.2 62 62.9
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 3.2e-11 73.9 43 81.4
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 6.6e-09 66.2 38 73.7
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 3.3e-08 63.9 70 52.9
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 4.7e-07 60.1 39 69.2
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.1e-06 58.9 53 60.4


User provided reference genes

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