Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO764G0154 Papaver somniferum HOM05D001978 ORTHO05D303115 6.0e-48 193.7 91 100.0
PSO675G4117 Papaver somniferum HOM05D001978 ORTHO05D003036 1.1e-22 109.8 53 92.5
PSO732G0135 Papaver somniferum HOM05D001978 ORTHO05D003036 1.6e-21 105.9 50 96.0
CSS0034960 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 2.5e-14 82.0 60 63.3
Rhsim01G0124800 Rhododendron simsii HOM05D001978 ORTHO05D003036 9.7e-14 80.1 57 63.2
CiPaw.14G004000 Carya illinoinensis HOM05D001978 ORTHO05D003036 1.3e-13 79.7 56 64.3
DCAR_031813 Daucus carota HOM05D001978 ORTHO05D003036 1.3e-13 79.7 56 62.5
SGA_v2.0_scaffold119G32768 Striga asiatica HOM05D001978 ORTHO05D003036 1.7e-13 79.3 53 69.8
THA.LOC104823030 Tarenaya hassleriana HOM05D001978 ORTHO05D003036 1.7e-13 79.3 53 66.0
TAR633G0096 Trochodendron aralioides HOM05D001978 ORTHO05D003036 1.7e-13 79.3 50 72.0
Sabra09G0040500 Salix brachista HOM05D001978 ORTHO05D003036 2.2e-13 79.0 62 59.7
Dinv07425 Davidia involucrata HOM05D001978 ORTHO05D003036 3.7e-13 78.2 50 70.0
Dinv43400 Davidia involucrata HOM05D001978 ORTHO05D003036 3.7e-13 78.2 50 70.0
FAN06G2210 Fragaria x ananassa HOM05D001978 ORTHO05D003036 3.7e-13 78.2 56 60.7
Hma1.2p1_0685F.1_g203310 Hydrangea macrophylla HOM05D001978 ORTHO05D003036 3.7e-13 78.2 50 70.0
TWI53G0392 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 3.7e-13 78.2 51 68.6
Actinidia21535 Actinidia chinensis HOM05D001978 ORTHO05D003036 4.8e-13 77.8 50 70.0
CiPaw.13G008500 Carya illinoinensis HOM05D001978 ORTHO05D003036 4.8e-13 77.8 53 67.9
Ciclev10030570m.g Citrus clementina HOM05D001978 ORTHO05D003036 4.8e-13 77.8 51 66.7
ECA248G1610 Erigeron canadensis HOM05D001978 ORTHO05D003036 4.8e-13 77.8 56 60.7
TAR369G0424 Trochodendron aralioides HOM05D001978 ORTHO05D003036 4.8e-13 77.8 55 63.6
Actinidia06286 Actinidia chinensis HOM05D001978 ORTHO05D003036 6.3e-13 77.4 50 68.0
ECA234G3788 Erigeron canadensis HOM05D001978 ORTHO05D003036 6.3e-13 77.4 54 64.8
FvH4_7g01850 Fragaria vesca HOM05D001978 ORTHO05D003036 6.3e-13 77.4 56 60.7
FAN01G0983 Fragaria x ananassa HOM05D001978 ORTHO05D003036 6.3e-13 77.4 56 60.7
FAN03G2968 Fragaria x ananassa HOM05D001978 ORTHO05D003036 6.3e-13 77.4 56 60.7
FAN10G1732 Fragaria x ananassa HOM05D001978 ORTHO05D003036 6.3e-13 77.4 56 60.7
MD02G1300000 Malus domestica HOM05D001978 ORTHO05D003036 6.3e-13 77.4 56 60.7
RcHm_v2.0_Chr1g0318481 Rosa chinensis HOM05D001978 ORTHO05D003036 6.3e-13 77.4 56 60.7
Cfa022633 Carpinus fangiana HOM05D001978 ORTHO05D003036 8.2e-13 77.0 50 70.0
Haze_03128 Corylus avellana HOM05D001978 ORTHO05D003036 8.2e-13 77.0 50 70.0
Haze_03129 Corylus avellana HOM05D001978 ORTHO05D003036 8.2e-13 77.0 50 70.0
HanXRQChr01g0015661 Helianthus annuus HOM05D001978 ORTHO05D003036 8.2e-13 77.0 55 61.8
Solyc01g088020.3 Solanum lycopersicum HOM05D001978 ORTHO05D003036 8.2e-13 77.0 55 63.6
Atru.chr11.2543 Acer truncatum HOM05D001978 ORTHO05D003036 1.1e-12 76.6 50 68.0
HanXRQChr16g0524831 Helianthus annuus HOM05D001978 ORTHO05D003036 1.1e-12 76.6 55 63.6
MD07G1024900 Malus domestica HOM05D001978 ORTHO05D003036 1.1e-12 76.6 56 58.9
QL04p010499 Quercus lobata HOM05D001978 ORTHO05D003036 1.1e-12 76.6 50 68.0
Rhsim07G0059400 Rhododendron simsii HOM05D001978 ORTHO05D003036 1.1e-12 76.6 50 68.0
GSVIVG01001441001 Vitis vinifera HOM05D001978 ORTHO05D003036 1.1e-12 76.6 50 68.0
BolC8t51381H Brassica oleracea HOM05D001978 ORTHO05D003036 1.4e-12 76.3 56 62.5
CANSAT80G0138 Cannabis sativa HOM05D001978 ORTHO05D003036 1.4e-12 76.3 76 47.4
Duzib133G0356 Durio zibethinus HOM05D001978 ORTHO05D003036 1.4e-12 76.3 50 68.0
Duzib268G1826 Durio zibethinus HOM05D001978 ORTHO05D003036 1.4e-12 76.3 50 68.0
Lsat_1_v5_gn_1_101701 Lactuca sativa HOM05D001978 ORTHO05D003036 1.4e-12 76.3 66 54.5
Thecc.01G404200 Theobroma cacao HOM05D001978 ORTHO05D003036 1.4e-12 76.3 50 68.0
Aqoxy2G04178 Aquilegia oxysepala HOM05D001978 ORTHO05D003036 1.8e-12 75.9 60 61.7
BcaB02g08058 Brassica carinata HOM05D001978 ORTHO05D003036 1.8e-12 75.9 54 63.0
A07p26260 Brassica napus HOM05D001978 ORTHO05D003036 1.8e-12 75.9 63 57.1
C06p28640 Brassica napus HOM05D001978 ORTHO05D003036 1.8e-12 75.9 63 57.1
BraA07t30269Z Brassica rapa HOM05D001978 ORTHO05D003036 1.8e-12 75.9 63 57.1
Gohir.D08G162400 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.8e-12 75.9 70 52.9
Gohir.D11G078201 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.8e-12 75.9 50 66.0
Gorai.007G083600 Gossypium raimondii HOM05D001978 ORTHO05D003036 1.8e-12 75.9 50 66.0
Nn2g15171 Nelumbo nucifera HOM05D001978 ORTHO05D003036 1.8e-12 75.9 50 68.0
Sopen01g034910 Solanum pennellii HOM05D001978 ORTHO05D003036 1.8e-12 75.9 52 65.4
TWI73G0465 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 1.8e-12 75.9 51 64.7
AL5G46320 Arabidopsis lyrata HOM05D001978 ORTHO05D003036 2.4e-12 75.5 50 68.0
BcaC07g40813 Brassica carinata HOM05D001978 ORTHO05D003036 2.4e-12 75.5 50 68.0
A09p55140 Brassica napus HOM05D001978 ORTHO05D003036 2.4e-12 75.5 50 68.0
C04p29860 Brassica napus HOM05D001978 ORTHO05D003036 2.4e-12 75.5 50 68.0
C08p38070 Brassica napus HOM05D001978 ORTHO05D003036 2.4e-12 75.5 50 68.0
BolC4t24517H Brassica oleracea HOM05D001978 ORTHO05D003036 2.4e-12 75.5 50 68.0
BraA09t40920Z Brassica rapa HOM05D001978 ORTHO05D003036 2.4e-12 75.5 50 68.0
Carub.0005s3007 Capsella rubella HOM05D001978 ORTHO05D003036 2.4e-12 75.5 50 68.0
Cc00_g06050 Coffea canephora HOM05D001978 ORTHO05D003036 2.4e-12 75.5 50 64.0
COL.COLO4_12328 Corchorus olitorius HOM05D001978 ORTHO05D003036 2.4e-12 75.5 56 64.3
ECA236G3334 Erigeron canadensis HOM05D001978 ORTHO05D003036 2.4e-12 75.5 55 61.8
Thhalv10005758m.g Eutrema salsugineum HOM05D001978 ORTHO05D003036 2.4e-12 75.5 50 68.0
Sp5g00090 Schrenkiella parvula HOM05D001978 ORTHO05D003036 2.4e-12 75.5 50 68.0
BolC6t38032H Brassica oleracea HOM05D001978 ORTHO05D003036 3.1e-12 75.1 56 60.7
CSS0022031 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 3.1e-12 75.1 50 68.0
Gohir.D12G103000 Gossypium hirsutum HOM05D001978 ORTHO05D003036 3.1e-12 75.1 50 68.0
Gorai.008G112200 Gossypium raimondii HOM05D001978 ORTHO05D003036 3.1e-12 75.1 50 68.0
HanXRQChr06g0183381 Helianthus annuus HOM05D001978 ORTHO05D003036 3.1e-12 75.1 55 61.8
Potri.001G260900 Populus trichocarpa HOM05D001978 ORTHO05D003036 3.1e-12 75.1 61 57.4
Potri.009G055400 Populus trichocarpa HOM05D001978 ORTHO05D003036 3.1e-12 75.1 62 56.5
SalBow5G1268 Salvia bowleyana HOM05D001978 ORTHO05D003036 3.1e-12 75.1 51 68.6
SalBow5G4104 Salvia bowleyana HOM05D001978 ORTHO05D003036 3.1e-12 75.1 51 68.6
TWI09G1049 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 3.1e-12 75.1 51 66.7
MSTRG.20555 Avicennia marina HOM05D001978 ORTHO05D003036 4.1e-12 74.7 50 66.0
A09p55130 Brassica napus HOM05D001978 ORTHO05D003036 4.1e-12 74.7 53 66.0
CAN.G909.18 Capsicum annuum HOM05D001978 ORTHO05D003036 4.1e-12 74.7 52 63.5
Lsat_1_v5_gn_4_32040 Lactuca sativa HOM05D001978 ORTHO05D003036 4.1e-12 74.7 52 65.4
Lj9A642T48 Lonicera japonica HOM05D001978 ORTHO05D003036 4.1e-12 74.7 50 68.0
Nitab4.5_0002888g0010 Nicotiana tabacum HOM05D001978 ORTHO05D003036 4.1e-12 74.7 52 63.5
Nitab4.5_0006695g0020 Nicotiana tabacum HOM05D001978 ORTHO05D003036 4.1e-12 74.7 52 63.5
Peaxi162Scf01108g00213 Petunia axillaris HOM05D001978 ORTHO05D003036 4.1e-12 74.7 52 63.5
Duzib138G1653 Durio zibethinus HOM05D001978 ORTHO05D003036 5.3e-12 74.3 50 66.0
Migut.B01256 Erythranthe guttata HOM05D001978 ORTHO05D003036 5.3e-12 74.3 50 68.0
Nn7g36348 Nelumbo nucifera HOM05D001978 ORTHO05D003036 5.3e-12 74.3 50 64.0
Hund16631 Selenicereus undatus HOM05D001978 ORTHO05D003036 5.3e-12 74.3 50 66.0
Aa31LG10G17320 Aethionema arabicum HOM05D001978 ORTHO05D003036 6.9e-12 73.9 50 66.0
AT3G63460 Arabidopsis thaliana HOM05D001978 ORTHO05D003036 6.9e-12 73.9 50 66.0
BcaC08g45262 Brassica carinata HOM05D001978 ORTHO05D003036 6.9e-12 73.9 50 66.0
Gohir.A08G141300 Gossypium hirsutum HOM05D001978 ORTHO05D003036 6.9e-12 73.9 51 62.7
Gorai.004G168700 Gossypium raimondii HOM05D001978 ORTHO05D003036 6.9e-12 73.9 51 62.7
Manes.07G011900 Manihot esculenta HOM05D001978 ORTHO05D003036 6.9e-12 73.9 51 62.7
Manes.10G135100 Manihot esculenta HOM05D001978 ORTHO05D003036 6.9e-12 73.9 50 64.0
PGR031G1837 Punica granatum HOM05D001978 ORTHO05D003036 6.9e-12 73.9 45 71.1
SGA_v2.0_scaffold4G02473 Striga asiatica HOM05D001978 ORTHO05D003036 6.9e-12 73.9 50 68.0
Cpa.g.sc125.58 Carica papaya HOM05D001978 ORTHO05D003036 9.1e-12 73.6 52 63.5
Gohir.D08G064900 Gossypium hirsutum HOM05D001978 ORTHO05D003036 9.1e-12 73.6 50 66.0
Lj7C575G6 Lonicera japonica HOM05D001978 ORTHO05D003036 9.1e-12 73.6 56 57.1
Lalb_Chr01g0000521 Lupinus albus HOM05D001978 ORTHO05D003036 9.1e-12 73.6 50 62.0
MBI19_g16674_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 9.1e-12 73.6 50 64.0
Phvul.011G010400 Phaseolus vulgaris HOM05D001978 ORTHO05D003036 9.1e-12 73.6 50 64.0
Gohir.A08G055600 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.2e-11 73.2 50 66.0
Gorai.004G067200 Gossypium raimondii HOM05D001978 ORTHO05D003036 1.2e-11 73.2 50 66.0
Lalb_Chr19g0140221 Lupinus albus HOM05D001978 ORTHO05D003036 1.2e-11 73.2 50 64.0
Prupe.2G024600 Prunus persica HOM05D001978 ORTHO05D003036 1.2e-11 73.2 56 55.4
SGA_v2.0_scaffold5G02944 Striga asiatica HOM05D001978 ORTHO05D003036 1.2e-11 73.2 51 64.7
THA.LOC104801971 Tarenaya hassleriana HOM05D001978 ORTHO05D003036 1.2e-11 73.2 52 63.5
VMungo1127G0961 Vigna mungo HOM05D001978 ORTHO05D003036 1.2e-11 73.2 50 64.0
BraA09t40921Z Brassica rapa HOM05D001978 ORTHO05D003036 1.5e-11 72.8 45 71.1
Eucgr.G03281 Eucalyptus grandis HOM05D001978 ORTHO05D003036 1.5e-11 72.8 50 64.0
Gohir.A11G073600 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.5e-11 72.8 50 64.0
SalBow6G2677 Salvia bowleyana HOM05D001978 ORTHO05D003036 1.5e-11 72.8 50 68.0
CARHR291510 Cardamine hirsuta HOM05D001978 ORTHO05D003036 2.0e-11 72.4 50 64.0
CDE02G0774 Ceratophyllum demersum HOM05D001978 ORTHO05D003036 2.0e-11 72.4 50 64.0
CDE09G0202 Ceratophyllum demersum HOM05D001978 ORTHO05D003036 2.0e-11 72.4 50 64.0
MBI13_g11939_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 2.0e-11 72.4 50 66.0
SalBow6G7160 Salvia bowleyana HOM05D001978 ORTHO05D003036 2.0e-11 72.4 50 66.0
Gohir.A12G100200 Gossypium hirsutum HOM05D001978 ORTHO05D003036 2.6e-11 72.0 50 66.0
arahy.Tifrunner.gnm1.ann1.T8W0FC Arachis hypogaea HOM05D001978 ORTHO05D003036 4.5e-11 71.2 50 62.0
MSTRG.17003 Avicennia marina HOM05D001978 ORTHO05D003036 4.5e-11 71.2 49 67.3
AUR62009427 Chenopodium quinoa HOM05D001978 ORTHO05D003036 4.5e-11 71.2 50 64.0
Lj3g0007867 Lotus japonicus HOM05D001978 ORTHO05D003036 4.5e-11 71.2 50 64.0
Lalb_Chr03g0024131 Lupinus albus HOM05D001978 ORTHO05D003036 4.5e-11 71.2 50 64.0
arahy.Tifrunner.gnm1.ann1.18AW2L Arachis hypogaea HOM05D001978 ORTHO05D003036 5.9e-11 70.9 50 60.0
Sc14g0004930 Simmondsia chinensis HOM05D001978 ORTHO05D003036 5.9e-11 70.9 50 62.0
Glyma.09G226400 Glycine max HOM05D001978 ORTHO05D003036 1.0e-10 70.1 50 60.0
Oeu014599.1 Olea europaea HOM05D001978 ORTHO05D003036 1.0e-10 70.1 41 75.6
Psat7g158440 Pisum sativum HOM05D001978 ORTHO05D003036 1.0e-10 70.1 56 58.9
Sc11g0009020 Simmondsia chinensis HOM05D001978 ORTHO05D003036 1.0e-10 70.1 50 62.0
Glyma.12G010300 Glycine max HOM05D001978 ORTHO05D003036 1.3e-10 69.7 50 60.0
TAR636G2630 Trochodendron aralioides HOM05D001978 ORTHO05D003036 1.3e-10 69.7 41 75.6
vmacro21141 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 1.3e-10 69.7 41 73.2
ClCG10G012130 Citrullus lanatus HOM05D001978 ORTHO05D003036 1.7e-10 69.3 50 60.0
Sed0016255 Sechium edule HOM05D001978 ORTHO05D003036 1.7e-10 69.3 50 60.0
vmacro13704 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 2.2e-10 68.9 41 73.2
EL10Ac2g04382 Beta vulgaris HOM05D001978 ORTHO05D003036 2.9e-10 68.6 50 60.0
Ca_26319_v3 Cicer arietinum L. HOM05D001978 ORTHO05D003036 3.8e-10 68.2 51 58.8
Ca_29948_v3 Cicer arietinum L. HOM05D001978 ORTHO05D003036 3.8e-10 68.2 51 58.8
MELO3C024002.2 Cucumis melo HOM05D001978 ORTHO05D003036 3.8e-10 68.2 50 58.0
CsaV3_3G031890 Cucumis sativus L. HOM05D001978 ORTHO05D003036 3.8e-10 68.2 50 58.0
Ah.16g100700 Amaranthus hybridus HOM05D001978 ORTHO05D003036 5.0e-10 67.8 50 60.0
A08p30170 Brassica napus HOM05D001978 ORTHO05D003036 6.5e-10 67.4 67 52.2
BraA08t34951Z Brassica rapa HOM05D001978 ORTHO05D003036 6.5e-10 67.4 67 52.2
ATR0057G085 Amborella trichopoda HOM05D001978 ORTHO05D003036 1.1e-09 66.6 41 70.7
Oeu006547.2 Olea europaea HOM05D001978 ORTHO05D003036 1.1e-09 66.6 41 70.7
AT1G18830 Arabidopsis thaliana HOM05D001978 ORTHO05D003036 1.4e-09 66.2 53 54.7
BcaC07g38951 Brassica carinata HOM05D001978 ORTHO05D003036 1.4e-09 66.2 61 52.5
BolC8t49521H Brassica oleracea HOM05D001978 ORTHO05D003036 1.4e-09 66.2 61 52.5
Sed0014499 Sechium edule HOM05D001978 ORTHO05D003036 1.9e-09 65.9 50 56.0
Zm00001eb329590 Zea mays HOM05D001978 ORTHO05D003036 1.9e-09 65.9 51 58.8
AL1G31350 Arabidopsis lyrata HOM05D001978 ORTHO05D003036 2.5e-09 65.5 66 45.5
TPR.G8347 Trifolium pratense HOM05D001978 ORTHO05D003036 2.5e-09 65.5 56 55.4
Zm00001eb110650 Zea mays HOM05D001978 ORTHO05D003036 4.2e-09 64.7 51 56.9
Carub.0001s1846 Capsella rubella HOM05D001978 ORTHO05D003036 5.5e-09 64.3 52 55.8
BcaB03g12953 Brassica carinata HOM05D001978 ORTHO05D003036 7.2e-09 63.9 64 50.0
C08p18950 Brassica napus HOM05D001978 ORTHO05D003036 1.6e-08 62.8 61 50.8
CARHR040110 Cardamine hirsuta HOM05D001978 ORTHO05D003036 1.6e-08 62.8 47 55.3
Sabra16G0159500 Salix brachista HOM05D001978 ORTHO05D003036 1.6e-08 62.8 40 67.5
Lsat_1_v5_gn_5_28021 Lactuca sativa HOM05D001978 ORTHO05D048368 2.1e-08 62.4 50 56.0
Medtr4g045577 Medicago truncatula HOM05D001978 ORTHO05D003036 4.7e-08 61.2 42 64.3
Os07g0657200 Oryza sativa ssp. japonica HOM05D001978 ORTHO05D003036 6.1e-08 60.8 53 52.8
HPP92_001386 Vanilla planifolia HOM05D001978 ORTHO05D003036 1.0e-07 60.1 46 56.5
TAR633G1125 Trochodendron aralioides HOM05D001978 ORTHO05D003036 3.9e-07 58.2 41 61.0
Mapoly0156s0008 Marchantia polymorpha HOM05D001978 ORTHO05D003036 2.0e-06 55.8 41 58.5
TPR.G20258 Trifolium pratense HOM05D001978 ORTHO05D003036 2.0e-06 55.8 41 58.5
TPR.G2961 Trifolium pratense HOM05D001978 ORTHO05D003036 2.6e-06 55.5 47 51.1
MCO15G626 Micromonas commoda HOM05D001978 ORTHO05D003036 9.7e-06 53.5 54 44.4


User provided reference genes

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