Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 3.7e-257 891.0 426 100.0
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 3.7e-241 837.8 412 97.1
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 3.0e-190 668.7 409 79.2
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 3.6e-188 661.8 397 79.6
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 2.4e-187 659.1 407 77.1
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 3.8e-185 651.7 388 79.4
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 5.6e-181 637.9 417 72.2
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 1.6e-180 636.3 417 72.2
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 2.8e-180 635.6 383 77.0
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 4.8e-180 634.8 406 73.4
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 1.8e-179 632.9 414 72.2
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 1.8e-179 632.9 417 71.7
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 5.8e-178 627.9 405 73.6
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 2.2e-177 625.9 409 72.1
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 1.9e-176 622.9 409 72.1
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 1.2e-175 620.2 407 72.5
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 1.2e-175 620.2 407 73.0
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 7.9e-175 617.5 417 70.3
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 2.3e-174 615.9 407 73.0
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 3.9e-174 615.1 368 75.5
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 1.9e-173 612.8 409 69.9
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 9.6e-173 610.5 410 71.0
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 1.6e-172 609.8 407 71.0
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 2.1e-172 609.4 402 71.9
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 6.2e-172 607.8 406 71.9
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 3.1e-171 605.5 406 71.7
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 4.0e-171 605.1 415 70.8
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 5.3e-171 604.7 410 71.2
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 1.2e-170 603.6 410 70.2
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 2.0e-170 602.8 460 66.5
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 1.3e-169 600.1 384 72.4
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 1.7e-169 599.7 454 65.2
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 3.8e-169 598.6 410 69.0
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 6.5e-169 597.8 408 71.8
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 8.4e-169 597.4 407 70.8
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 1.4e-168 596.7 406 70.4
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 2.5e-168 595.9 407 70.3
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.2e-168 595.1 406 69.0
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 7.1e-168 594.3 407 70.0
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 2.1e-167 592.8 409 71.9
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 2.7e-167 592.4 410 70.7
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 3.5e-167 592.0 420 68.1
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 6.0e-167 591.3 405 70.9
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 7.9e-167 590.9 403 71.7
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 7.9e-167 590.9 414 69.3
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 2.3e-166 589.3 384 72.7
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 1.1e-165 587.0 421 66.3
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 2.5e-165 585.9 406 69.2
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 5.7e-165 584.7 409 66.7
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 1.3e-164 583.6 404 69.8
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 1.6e-164 583.2 420 66.7
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 1.8e-163 579.7 413 69.5
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 3.1e-163 578.9 415 68.2
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 1.5e-162 576.6 409 68.0
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 2.2e-161 572.8 412 66.7
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 2.9e-161 572.4 417 66.4
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 5.0e-161 571.6 413 67.6
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 6.5e-161 571.2 413 65.6
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 6.5e-161 571.2 420 66.0
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 1.4e-160 570.1 409 67.5
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 5.5e-160 568.2 417 65.7
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 5.5e-160 568.2 404 69.1
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 7.2e-160 567.8 410 65.9
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 7.2e-160 567.8 406 67.5
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 1.2e-159 567.0 412 66.5
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 1.6e-159 566.6 382 69.9
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 3.6e-159 565.5 421 65.6
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 7.9e-159 564.3 409 68.2
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 1.4e-158 563.5 377 71.1
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 3.9e-158 562.0 412 67.0
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 3.9e-158 562.0 407 67.1
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 1.1e-157 560.5 409 66.3
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 1.5e-157 560.1 371 70.4
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 1.9e-157 559.7 409 65.8
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 1.7e-156 556.6 407 65.8
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.2e-156 556.2 376 70.7
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 4.8e-156 555.1 416 65.4
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 1.1e-155 553.9 407 65.4
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 1.4e-155 553.5 409 65.8
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 3.1e-155 552.4 407 64.6
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 3.4e-154 548.9 339 75.2
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 1.3e-153 547.0 357 70.9
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 7.2e-152 541.2 374 67.1
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.2e-151 540.4 337 73.9
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 1.8e-150 536.6 397 63.2
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 2.3e-150 536.2 412 63.3
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 3.9e-150 535.4 412 62.9
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 1.3e-148 530.4 300 79.0
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 3.1e-147 525.8 367 70.3
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 5.5e-144 515.0 372 65.3
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 4.7e-143 511.9 441 60.1
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 2.0e-141 506.5 418 62.4
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 2.6e-138 496.1 334 69.8
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 1.7e-137 493.4 417 60.0
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.9e-137 492.7 363 65.6
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 3.8e-137 492.3 363 65.6
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 1.7e-132 476.9 430 54.9
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 6.3e-132 474.9 420 56.4
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 5.9e-130 468.4 368 60.1
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 3.8e-129 465.7 411 56.2
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.5e-129 464.9 405 59.0
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 6.5e-129 464.9 368 59.2
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.2e-126 455.3 362 62.4
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 2.0e-125 453.4 356 63.8
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 6.3e-124 448.4 356 63.5
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.3e-121 440.7 403 56.1
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 2.3e-121 439.9 325 65.2
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 9.5e-120 434.5 311 68.2
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 2.8e-119 433.0 409 54.8
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 4.9e-116 422.2 399 56.1
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 5.9e-114 415.2 320 62.8
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.3e-110 403.3 247 72.5
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 8.9e-110 401.4 274 70.1
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 4.4e-109 399.1 349 58.2
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.7e-108 397.1 412 52.4
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 5.4e-107 392.1 259 72.2
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 7.0e-107 391.7 436 47.5
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 3.1e-102 376.3 283 59.7
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 8.6e-97 358.2 414 45.2
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 3.3e-96 356.3 269 66.2
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 3.6e-95 352.8 199 81.9
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 3.1e-94 349.7 200 79.5
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.4e-93 346.3 272 61.8
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.2e-91 338.2 349 52.1
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.6e-85 318.5 202 72.8
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.1e-83 312.0 202 70.3
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.1e-83 312.0 212 68.4
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 1.2e-74 284.6 296 45.3
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 2.1e-74 283.9 165 80.6
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 5.1e-73 279.3 167 74.3
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 5.8e-69 265.8 401 39.2
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.4e-60 235.7 194 60.3
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.6e-58 229.6 144 71.5
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.6e-58 229.6 144 71.5
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.6e-58 229.6 144 71.5
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.1e-57 226.1 144 70.8
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 6.9e-54 215.7 259 46.7
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.0e-54 215.3 153 66.0
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.2e-47 192.2 187 54.0
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 5.9e-45 186.0 119 70.6
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.0e-40 171.0 96 76.0
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 1.4e-38 164.9 86 84.9
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 2.5e-35 154.1 100 67.0
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 1.6e-34 151.4 108 64.8
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 7.0e-30 136.0 84 72.6
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-25 121.7 75 70.7
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.3e-23 112.8 62 79.0
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 7.5e-16 89.4 47 85.1
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 3.7e-15 87.0 84 52.4
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.4e-14 84.3 43 83.7
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 4.5e-13 80.1 66 57.6
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 4.0e-09 67.0 36 83.3
Gohir.A08G000024 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.5e-08 65.1 104 40.4
Gohir.D03G178375 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.1e-06 57.0 64 43.8


User provided reference genes

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