Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 1.3e-123 446.4 227 100.0
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 3.3e-95 352.1 205 87.3
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 1.5e-71 273.5 203 70.4
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 1.6e-70 270.0 203 71.9
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 7.6e-68 261.2 209 64.6
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 2.9e-67 259.2 207 66.7
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 7.1e-66 254.6 209 64.1
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 9.3e-66 254.2 207 66.2
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 1.6e-65 253.4 207 64.7
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 3.0e-64 249.2 206 63.1
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 3.9e-64 248.8 205 65.4
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 8.7e-64 247.7 209 60.8
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 1.9e-63 246.5 209 60.3
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 2.5e-63 246.1 191 66.5
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 2.5e-63 246.1 208 63.5
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 4.3e-63 245.4 207 61.8
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 1.6e-62 243.4 210 63.8
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 2.2e-62 243.0 210 63.3
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 2.2e-62 243.0 168 74.4
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.7e-62 242.3 207 61.8
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.8e-62 241.9 207 61.8
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 4.8e-62 241.9 204 61.8
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 4.8e-62 241.9 203 63.5
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 6.3e-62 241.5 207 63.3
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-61 240.7 207 61.4
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-61 240.7 207 61.4
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-61 240.7 207 61.4
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-61 240.7 207 61.4
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 1.1e-61 240.7 207 61.4
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.4e-61 240.4 207 61.4
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.1e-61 239.2 207 60.9
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.1e-61 238.8 207 60.9
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 5.3e-61 238.4 203 61.1
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 6.9e-61 238.0 199 62.8
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 6.9e-61 238.0 209 60.8
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 9.0e-61 237.7 207 60.9
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 1.2e-60 237.3 210 61.0
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 2.6e-60 236.1 210 62.9
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 2.6e-60 236.1 207 61.4
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 1.0e-59 234.2 206 60.2
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 2.2e-59 233.0 208 61.5
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 6.5e-59 231.5 210 57.1
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 8.5e-59 231.1 203 58.6
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 8.5e-59 231.1 209 57.9
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 1.1e-58 230.7 203 58.6
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 1.9e-58 229.9 210 55.7
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 1.9e-58 229.9 208 58.2
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 1.9e-58 229.9 206 60.2
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 2.5e-58 229.6 213 59.2
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 3.2e-58 229.2 210 55.2
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 4.2e-58 228.8 209 57.4
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 5.5e-58 228.4 210 55.2
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 5.5e-58 228.4 214 59.3
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 1.6e-57 226.9 205 60.5
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 3.6e-57 225.7 208 57.2
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 3.6e-57 225.7 188 63.3
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 3.6e-57 225.7 207 58.0
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 6.1e-57 224.9 191 61.8
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 7.9e-57 224.6 209 56.5
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 1.0e-56 224.2 203 57.1
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 1.4e-56 223.8 212 58.0
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 1.4e-56 223.8 204 57.4
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 1.8e-56 223.4 182 63.7
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 3.0e-56 222.6 238 52.1
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 3.9e-56 222.2 212 56.6
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 3.9e-56 222.2 213 56.8
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 3.9e-56 222.2 203 55.7
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 5.1e-56 221.9 212 57.1
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 6.7e-56 221.5 206 55.8
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 6.7e-56 221.5 207 57.5
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 6.7e-56 221.5 196 57.7
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 8.8e-56 221.1 209 58.9
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 1.1e-55 220.7 209 58.9
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 1.1e-55 220.7 204 55.9
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 2.0e-55 219.9 204 55.9
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 2.5e-55 219.5 209 57.9
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 3.3e-55 219.2 193 62.7
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 3.3e-55 219.2 204 55.4
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 3.3e-55 219.2 206 57.3
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 4.3e-55 218.8 196 57.7
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 4.3e-55 218.8 214 54.2
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 5.7e-55 218.4 204 55.9
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 5.7e-55 218.4 208 56.7
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 7.4e-55 218.0 209 58.9
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 9.7e-55 217.6 204 55.9
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 9.7e-55 217.6 204 55.9
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 1.3e-54 217.2 215 55.8
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 1.3e-54 217.2 204 55.9
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 1.3e-54 217.2 215 53.0
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 1.7e-54 216.9 204 55.4
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 1.7e-54 216.9 213 54.9
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 1.7e-54 216.9 204 55.9
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 1.7e-54 216.9 223 54.7
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 1.7e-54 216.9 215 53.0
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 4.8e-54 215.3 204 55.4
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 6.3e-54 214.9 184 62.5
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 6.3e-54 214.9 199 56.8
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 8.2e-54 214.5 209 57.4
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 1.4e-53 213.8 199 56.3
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 1.8e-53 213.4 184 62.0
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 4.1e-53 212.2 214 53.3
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 5.3e-53 211.8 184 62.0
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 5.3e-53 211.8 245 50.6
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 1.5e-52 210.3 212 53.8
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 2.6e-52 209.5 210 54.3
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.5e-52 208.8 199 58.3
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 1.0e-51 207.6 218 52.3
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 1.3e-51 207.2 262 48.1
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 3.8e-51 205.7 180 60.6
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 5.0e-51 205.3 221 53.8
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 6.5e-51 204.9 243 49.8
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 5.5e-50 201.8 182 59.9
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 5.5e-50 201.8 214 50.5
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 7.2e-50 201.4 259 45.2
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.0e-48 197.6 165 63.0
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.8e-48 196.8 211 52.1
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 6.7e-48 194.9 201 55.2
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 2.0e-47 193.4 183 56.3
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 9.1e-45 184.5 238 45.8
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 2.2e-43 179.9 191 50.8
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 6.5e-43 178.3 221 46.2
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.4e-40 170.6 140 63.6
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 2.6e-39 166.4 195 48.2
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 9.7e-39 164.5 134 64.9
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 1.1e-37 161.0 308 37.0
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 4.1e-37 159.1 166 53.6
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 2.9e-35 152.9 141 58.2
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 6.5e-35 151.8 102 72.5
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 1.9e-34 150.2 134 61.9
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 1.0e-32 144.4 138 60.1
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 1.8e-32 143.7 117 62.4
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.0e-32 142.9 136 58.1
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 2.6e-31 139.8 148 54.7
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 5.7e-31 138.7 139 59.7
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 7.5e-31 138.3 159 52.2
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 1.2e-25 120.9 189 37.6
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.1e-25 120.2 92 65.2
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 3.6e-25 119.4 213 36.2
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 3.7e-22 109.4 114 52.6
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 1.8e-21 107.1 164 38.4
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 2.4e-21 106.7 91 57.1
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 5.0e-19 99.0 171 35.1
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 4.3e-18 95.9 73 61.6
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 4.3e-18 95.9 91 54.9
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 5.6e-18 95.5 148 44.6
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 1.0e-16 91.3 108 49.1
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 4.0e-16 89.4 142 41.5
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 1.3e-14 84.3 70 65.7
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.3e-08 63.5 57 47.4


User provided reference genes

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