Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G6953 Papaver somniferum HOM05D003208 ORTHO05D004103 4.6e-46 187.6 97 100.0
PSO541G6125 Papaver somniferum HOM05D003208 ORTHO05D004103 6.6e-45 183.7 96 94.8
PSO675G0282 Papaver somniferum HOM05D003208 ORTHO05D004103 2.5e-44 181.8 96 93.8
vmacro12976 Vaccinium macrocarpon HOM05D003208 ORTHO05D004103 1.7e-24 115.9 89 61.8
Haze_24867 Corylus avellana HOM05D003208 ORTHO05D004103 6.4e-24 114.0 89 67.4
Rhsim10G0166900 Rhododendron simsii HOM05D003208 ORTHO05D004103 6.4e-24 114.0 89 60.7
TAR628G1304 Trochodendron aralioides HOM05D003208 ORTHO05D004103 6.4e-24 114.0 87 65.5
Aqoxy6G00734 Aquilegia oxysepala HOM05D003208 ORTHO05D004103 8.4e-24 113.6 101 63.4
CDE10G0727 Ceratophyllum demersum HOM05D003208 ORTHO05D004103 9.3e-23 110.2 90 61.1
Ciclev10024895m.g Citrus clementina HOM05D003208 ORTHO05D004103 9.3e-23 110.2 96 59.4
QL06p048297 Quercus lobata HOM05D003208 ORTHO05D004103 1.2e-22 109.8 83 63.9
Cfa002613 Carpinus fangiana HOM05D003208 ORTHO05D004103 1.6e-22 109.4 93 64.5
Nn5g30027 Nelumbo nucifera HOM05D003208 ORTHO05D004103 2.1e-22 109.0 96 62.5
Carub.0004s0156 Capsella rubella HOM05D003208 ORTHO05D004103 2.7e-22 108.6 89 57.3
GSVIVG01003416001 Vitis vinifera HOM05D003208 ORTHO05D004103 2.7e-22 108.6 96 58.3
Sc03g0000100 Simmondsia chinensis HOM05D003208 ORTHO05D004103 3.5e-22 108.2 93 60.2
BcaC02g08664 Brassica carinata HOM05D003208 ORTHO05D004103 4.6e-22 107.8 90 57.8
BolC4t26736H Brassica oleracea HOM05D003208 ORTHO05D004103 4.6e-22 107.8 90 57.8
MD01G1034300 Malus domestica HOM05D003208 ORTHO05D004103 6.0e-22 107.5 95 64.2
A04p16880 Brassica napus HOM05D003208 ORTHO05D004103 7.9e-22 107.1 90 57.8
BraA04t17321Z Brassica rapa HOM05D003208 ORTHO05D004103 7.9e-22 107.1 90 57.8
Duzib147G1622 Durio zibethinus HOM05D003208 ORTHO05D004103 7.9e-22 107.1 89 56.2
FAN28G0091 Fragaria x ananassa HOM05D003208 ORTHO05D004103 7.9e-22 107.1 93 57.0
FvH4_1g20370 Fragaria vesca HOM05D003208 ORTHO05D004103 1.3e-21 106.3 94 58.5
BcaC02g08709 Brassica carinata HOM05D003208 ORTHO05D004103 1.8e-21 105.9 90 56.7
C04p51440 Brassica napus HOM05D003208 ORTHO05D004103 1.8e-21 105.9 90 56.7
FAN23G1395 Fragaria x ananassa HOM05D003208 ORTHO05D004103 1.8e-21 105.9 94 58.5
RcHm_v2.0_Chr2g0112501 Rosa chinensis HOM05D003208 ORTHO05D004103 2.3e-21 105.5 94 58.5
Thecc.01G096900 Theobroma cacao HOM05D003208 ORTHO05D004103 3.0e-21 105.1 89 55.1
Gorai.003G041000 Gossypium raimondii HOM05D003208 ORTHO05D004103 3.9e-21 104.8 89 53.9
Aa31LG7G14430 Aethionema arabicum HOM05D003208 ORTHO05D004103 5.1e-21 104.4 90 56.7
Cpa.g.sc55.83 Carica papaya HOM05D003208 ORTHO05D004103 5.1e-21 104.4 88 58.0
FAN26G2141 Fragaria x ananassa HOM05D003208 ORTHO05D004103 5.1e-21 104.4 94 57.4
Gohir.D03G039900 Gossypium hirsutum HOM05D003208 ORTHO05D004103 5.1e-21 104.4 89 55.1
Sp4g01430 Schrenkiella parvula HOM05D003208 ORTHO05D004103 5.1e-21 104.4 90 56.7
THA.LOC104807678 Tarenaya hassleriana HOM05D003208 ORTHO05D004103 6.7e-21 104.0 89 56.2
Atru.chr3.1361 Acer truncatum HOM05D003208 ORTHO05D004103 8.7e-21 103.6 99 57.6
Actinidia19997 Actinidia chinensis HOM05D003208 ORTHO05D004103 8.7e-21 103.6 92 62.0
BcaC07g41076 Brassica carinata HOM05D003208 ORTHO05D004103 8.7e-21 103.6 90 56.7
A09p57600 Brassica napus HOM05D003208 ORTHO05D004103 8.7e-21 103.6 90 56.7
BolC8t51644H Brassica oleracea HOM05D003208 ORTHO05D004103 8.7e-21 103.6 90 56.7
BraA09t41152Z Brassica rapa HOM05D003208 ORTHO05D004103 8.7e-21 103.6 90 56.7
Dinv13221 Davidia involucrata HOM05D003208 ORTHO05D004103 8.7e-21 103.6 94 63.8
Solyc05g051520.3 Solanum lycopersicum HOM05D003208 ORTHO05D004103 8.7e-21 103.6 96 58.3
AT2G22400 Arabidopsis thaliana HOM05D003208 ORTHO05D004103 1.1e-20 103.2 89 55.1
Thhalv10000050m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 1.1e-20 103.2 90 55.6
Hma1.2p1_0019F.1_g013690 Hydrangea macrophylla HOM05D003208 ORTHO05D004103 1.1e-20 103.2 95 61.1
C08p40800 Brassica napus HOM05D003208 ORTHO05D004103 1.5e-20 102.8 90 55.6
HPP92_013110 Vanilla planifolia HOM05D003208 ORTHO05D004103 1.5e-20 102.8 100 59.0
MSTRG.2578 Avicennia marina HOM05D003208 ORTHO05D004103 1.9e-20 102.4 89 58.4
Zm00001eb315780 Zea mays HOM05D003208 ORTHO05D004103 1.9e-20 102.4 90 58.9
CAN.G151.12 Capsicum annuum HOM05D003208 ORTHO05D004103 2.5e-20 102.1 89 60.7
ClCG01G018610 Citrullus lanatus HOM05D003208 ORTHO05D004103 2.5e-20 102.1 96 59.4
COL.COLO4_27282 Corchorus olitorius HOM05D003208 ORTHO05D004103 2.5e-20 102.1 89 53.9
Oeu056635.1 Olea europaea HOM05D003208 ORTHO05D004103 2.5e-20 102.1 99 51.5
Potri.007G096100 Populus trichocarpa HOM05D003208 ORTHO05D004103 2.5e-20 102.1 97 55.7
Prupe.6G191700 Prunus persica HOM05D003208 ORTHO05D004103 3.3e-20 101.7 95 63.2
PGSC0003DMG400016157 Solanum tuberosum HOM05D003208 ORTHO05D004103 3.3e-20 101.7 98 56.1
Phvul.002G261300 Phaseolus vulgaris HOM05D003208 ORTHO05D004103 4.3e-20 101.3 96 55.2
CAN.G905.28 Capsicum annuum HOM05D003208 ORTHO05D004103 5.6e-20 100.9 98 54.1
Migut.H02342 Erythranthe guttata HOM05D003208 ORTHO05D004103 5.6e-20 100.9 91 59.3
Gohir.A02G129100 Gossypium hirsutum HOM05D003208 ORTHO05D004103 5.6e-20 100.9 89 52.8
MD15G1321500 Malus domestica HOM05D003208 ORTHO05D004103 5.6e-20 100.9 98 61.2
ATR0684G089 Amborella trichopoda HOM05D003208 ORTHO05D004103 7.4e-20 100.5 96 60.4
BcaB08g35063 Brassica carinata HOM05D003208 ORTHO05D004103 7.4e-20 100.5 90 54.4
CiPaw.03G144800 Carya illinoinensis HOM05D003208 ORTHO05D004103 7.4e-20 100.5 92 62.0
Eucgr.H04746 Eucalyptus grandis HOM05D003208 ORTHO05D004103 7.4e-20 100.5 95 54.7
AL4G11900 Arabidopsis lyrata HOM05D003208 ORTHO05D004103 9.6e-20 100.1 89 51.7
Sabra07G0079200 Salix brachista HOM05D003208 ORTHO05D004103 9.6e-20 100.1 95 54.7
Sed0002614 Sechium edule HOM05D003208 ORTHO05D004103 9.6e-20 100.1 96 56.2
VMungo0251G3398 Vigna mungo HOM05D003208 ORTHO05D004103 9.6e-20 100.1 96 55.2
AUR62027218 Chenopodium quinoa HOM05D003208 ORTHO05D004103 1.3e-19 99.8 98 55.1
Sopen05g029940 Solanum pennellii HOM05D003208 ORTHO05D004103 1.3e-19 99.8 95 61.1
Glyma.08G133700 Glycine max HOM05D003208 ORTHO05D004103 2.1e-19 99.0 96 54.2
DCAR_003477 Daucus carota HOM05D003208 ORTHO05D004103 2.8e-19 98.6 90 58.9
SGA_v2.0_scaffold111G31500 Striga asiatica HOM05D003208 ORTHO05D004103 3.7e-19 98.2 92 56.5
TWI74G0107 Tripterygium wilfordii HOM05D003208 ORTHO05D004103 3.7e-19 98.2 97 54.6
Glyma.05G176167 Glycine max HOM05D003208 ORTHO05D004103 4.8e-19 97.8 96 54.2
TWI77G0296 Tripterygium wilfordii HOM05D003208 ORTHO05D004103 6.2e-19 97.4 97 54.6
Nitab4.5_0000128g0250 Nicotiana tabacum HOM05D003208 ORTHO05D004103 1.1e-18 96.7 92 55.4
Lalb_Chr07g0185301 Lupinus albus HOM05D003208 ORTHO05D004103 1.4e-18 96.3 95 54.7
Solyc11g010110.3 Solanum lycopersicum HOM05D003208 ORTHO05D004103 1.4e-18 96.3 92 55.4
CARHR113590 Cardamine hirsuta HOM05D003208 ORTHO05D004103 1.8e-18 95.9 89 52.8
EL10Ac6g14824 Beta vulgaris HOM05D003208 ORTHO05D004103 3.1e-18 95.1 94 54.3
Mapoly0022s0008 Marchantia polymorpha HOM05D003208 ORTHO05D004103 3.1e-18 95.1 99 49.5
Os09g0471900 Oryza sativa ssp. japonica HOM05D003208 ORTHO05D004103 5.3e-18 94.4 96 52.1
Nitab4.5_0012684g0010 Nicotiana tabacum HOM05D003208 ORTHO05D004103 9.0e-18 93.6 98 52.0
SalBow3G0841 Salvia bowleyana HOM05D003208 ORTHO05D004103 9.0e-18 93.6 93 55.9
SalBow3G1582 Salvia bowleyana HOM05D003208 ORTHO05D004103 9.0e-18 93.6 93 55.9
Lalb_Chr13g0295911 Lupinus albus HOM05D003208 ORTHO05D004103 1.2e-17 93.2 95 52.6
CANSAT01G1547 Cannabis sativa HOM05D003208 ORTHO05D004103 2.0e-17 92.4 93 53.8
PGR102G0950 Punica granatum HOM05D003208 ORTHO05D004103 2.0e-17 92.4 97 51.5
AagrBONN_evm.TU.Sc2ySwM_368.2854 Anthoceros agrestis HOM05D003208 ORTHO05D004103 2.6e-17 92.0 94 52.1
arahy.Tifrunner.gnm1.ann1.56KYQ9 Arachis hypogaea HOM05D003208 ORTHO05D004103 2.6e-17 92.0 102 50.0
arahy.Tifrunner.gnm1.ann1.G6ARYH Arachis hypogaea HOM05D003208 ORTHO05D004103 2.6e-17 92.0 102 50.0
MELO3C007741.2 Cucumis melo HOM05D003208 ORTHO05D004103 2.6e-17 92.0 101 57.4
Glyma.11G241400 Glycine max HOM05D003208 ORTHO05D004103 2.6e-17 92.0 98 56.1
SEGI_04873 Sequoiadendron giganteum HOM05D003208 ORTHO05D004103 2.6e-17 92.0 91 54.9
CsaV3_6G045280 Cucumis sativus L. HOM05D003208 ORTHO05D004103 3.4e-17 91.7 99 58.6
VMungo1383G1326 Vigna mungo HOM05D003208 ORTHO05D004103 3.4e-17 91.7 95 52.6
Sed0018597 Sechium edule HOM05D003208 ORTHO05D004103 1.0e-16 90.1 95 50.5
Lsat_1_v5_gn_5_45360 Lactuca sativa HOM05D003208 ORTHO05D004103 1.7e-16 89.4 98 54.1
Cc07_g14750 Coffea canephora HOM05D003208 ORTHO05D004103 2.2e-16 89.0 101 52.5
Lj4g0011115 Lotus japonicus HOM05D003208 ORTHO05D004103 2.9e-16 88.6 93 50.5
Ah.02g126130 Amaranthus hybridus HOM05D003208 ORTHO05D004103 3.8e-16 88.2 94 53.2
TPR.G6241 Trifolium pratense HOM05D003208 ORTHO05D004103 4.9e-16 87.8 89 49.4
HanXRQChr07g0196311 Helianthus annuus HOM05D003208 ORTHO05D004103 6.5e-16 87.4 90 50.0
Ca_17757_v3 Cicer arietinum L. HOM05D003208 ORTHO05D004103 8.4e-16 87.0 89 49.4
Psat7g057040 Pisum sativum HOM05D003208 ORTHO05D004103 1.1e-15 86.7 89 48.3
HPP92_013098 Vanilla planifolia HOM05D003208 ORTHO05D004103 1.4e-15 86.3 101 54.5
ECA246G0394 Erigeron canadensis HOM05D003208 ORTHO05D004103 1.9e-15 85.9 95 55.8
Phvul.001G253400 Phaseolus vulgaris HOM05D003208 ORTHO05D004103 5.5e-15 84.3 95 52.6
Pp3c15_5210 Physcomitrium patens HOM05D003208 ORTHO05D004103 5.5e-15 84.3 96 49.0
SMO165G0121 Selaginella moellendorffii HOM05D003208 ORTHO05D004103 1.6e-14 82.8 91 50.5
Medtr8g089980 Medicago truncatula HOM05D003208 ORTHO05D004103 2.7e-14 82.0 90 51.1
Medtr3g086950 Medicago truncatula HOM05D003208 ORTHO05D004103 3.5e-14 81.6 96 54.2
Nitab4.5_0000241g0270 Nicotiana tabacum HOM05D003208 ORTHO05D004103 6.0e-14 80.9 111 47.7
AUR62003252 Chenopodium quinoa HOM05D003208 ORTHO05D004103 3.0e-13 78.6 98 50.0
Ca_16514_v3 Cicer arietinum L. HOM05D003208 ORTHO05D004103 3.0e-13 78.6 93 50.5
Psat5g090760 Pisum sativum HOM05D003208 ORTHO05D004103 5.1e-13 77.8 93 50.5
Os08g0484400 Oryza sativa ssp. japonica HOM05D003208 ORTHO05D004103 1.9e-12 75.9 93 46.2
Aa31LG6G15240 Aethionema arabicum HOM05D003208 ORTHO05D004103 3.3e-12 75.1 86 50.0
CBR_g12755 Chara braunii HOM05D003208 ORTHO05D004103 5.7e-12 74.3 95 46.3
Nitab4.5_0002604g0040 Nicotiana tabacum HOM05D003208 ORTHO05D004103 7.4e-12 73.9 91 51.6
Thhalv10024482m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 1.6e-11 72.8 89 46.1
BcaNung05188 Brassica carinata HOM05D003208 ORTHO05D004103 2.2e-11 72.4 93 46.2
Carub.0007s0196 Capsella rubella HOM05D003208 ORTHO05D004103 5.3e-10 67.8 89 40.4
Sp7g35870 Schrenkiella parvula HOM05D003208 ORTHO05D004103 5.3e-10 67.8 89 43.8
Actinidia06543 Actinidia chinensis HOM05D003208 ORTHO05D004103 6.9e-10 67.4 51 60.8
Thhalv10000064m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 1.5e-09 66.2 89 44.9
AL7G12310 Arabidopsis lyrata HOM05D003208 ORTHO05D004103 3.4e-09 65.1 93 43.0
Haze_24864 Corylus avellana HOM05D003208 ORTHO05D001251 5.9e-09 64.3 76 43.4
CARHR246680 Cardamine hirsuta HOM05D003208 ORTHO05D004103 1.7e-08 62.8 93 43.0
Lj6g0024442 Lotus japonicus HOM05D003208 ORTHO05D004103 2.2e-08 62.4 52 59.6
Peaxi162Scf00381g00061 Petunia axillaris HOM05D003208 ORTHO05D004103 2.9e-08 62.0 59 59.3
A01p00920 Brassica napus HOM05D003208 ORTHO05D004103 3.8e-08 61.6 39 66.7
BraA01t00090Z Brassica rapa HOM05D003208 ORTHO05D004103 3.8e-08 61.6 39 66.7
TPR.G15995 Trifolium pratense HOM05D003208 ORTHO05D004103 3.2e-07 58.5 43 62.8
BcaNung00929 Brassica carinata HOM05D003208 ORTHO05D004103 5.5e-07 57.8 89 39.3
C01p01050 Brassica napus HOM05D003208 ORTHO05D004103 5.5e-07 57.8 89 39.3
unitig_699.g19581 Utricularia gibba HOM05D003208 ORTHO05D004103 5.5e-07 57.8 68 48.5
Zm00001eb033550 Zea mays HOM05D003208 ORTHO05D004103 5.5e-07 57.8 93 38.7
BolC1t00102H Brassica oleracea HOM05D003208 ORTHO05D004103 7.2e-07 57.4 89 39.3
PGR004G2195 Punica granatum HOM05D003208 ORTHO05D004103 9.3e-07 57.0 89 41.6
Lalb_Chr23g0277531 Lupinus albus HOM05D003208 ORTHO05D004103 2.1e-06 55.8 84 36.9
MCO16G190 Micromonas commoda HOM05D003208 ORTHO05D004103 2.7e-06 55.5 84 39.3
AT4G40000 Arabidopsis thaliana HOM05D003208 ORTHO05D004103 4.6e-06 54.7 84 36.9


User provided reference genes

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