Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 0.0e+00 1865.5 930 100.0
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 0.0e+00 1083.2 958 59.8
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 2.9e-307 1058.5 953 58.8
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 2.0e-303 1045.8 961 59.1
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 4.2e-290 1001.5 963 55.8
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 1.6e-289 999.6 949 56.9
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 3.6e-289 998.4 958 55.5
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 4.7e-289 998.0 947 56.1
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 5.2e-288 994.6 943 56.6
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 8.8e-288 993.8 947 55.9
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 3.7e-286 988.4 952 55.1
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 6.5e-283 977.6 959 55.7
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 4.2e-282 974.9 954 55.1
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 4.7e-281 971.5 961 53.9
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 6.1e-281 971.1 970 54.2
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 5.2e-280 968.0 943 54.4
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 8.9e-280 967.2 954 54.9
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 2.6e-279 965.7 949 55.6
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 1.7e-278 963.0 941 55.3
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 1.8e-277 959.5 939 54.3
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 1.5e-274 949.9 951 53.0
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 2.4e-269 932.6 966 52.4
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 5.0e-267 924.9 977 52.0
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.2e-265 920.2 995 51.5
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 1.6e-265 919.8 955 53.0
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 2.1e-265 919.5 938 53.2
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 2.8e-265 919.1 940 52.4
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 6.2e-265 917.9 945 52.8
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 3.1e-264 915.6 943 53.0
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 3.1e-264 915.6 956 53.2
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 5.2e-264 914.8 926 52.7
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 8.9e-264 914.1 947 52.9
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 1.2e-263 913.7 938 53.2
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 1.5e-263 913.3 948 52.1
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 9.8e-263 910.6 939 51.9
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 4.1e-261 905.2 916 53.9
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 1.2e-260 903.7 956 51.5
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 2.0e-260 902.9 941 52.1
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 2.7e-260 902.5 944 51.5
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 7.8e-260 901.0 955 51.3
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 1.0e-259 900.6 946 51.8
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 6.6e-259 897.9 942 51.5
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 3.3e-258 895.6 942 51.3
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 3.3e-258 895.6 941 50.8
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 7.3e-258 894.4 962 52.2
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 9.5e-258 894.0 943 51.2
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 2.1e-257 892.9 952 51.8
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 3.6e-257 892.1 946 50.7
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 6.2e-257 891.3 946 51.9
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 8.1e-257 891.0 977 50.5
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 1.1e-256 890.6 944 49.0
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 1.2e-255 887.1 948 51.7
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 1.2e-255 887.1 949 51.0
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 1.5e-255 886.7 950 51.3
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.3e-254 883.6 1025 49.3
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 1.1e-253 880.6 943 51.2
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 1.2e-252 877.1 944 51.8
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 5.1e-251 871.7 934 50.5
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 7.3e-250 867.8 917 49.9
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 2.2e-246 856.3 930 49.5
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 3.8e-246 855.5 941 50.6
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 6.4e-246 854.7 947 50.1
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 5.4e-245 851.7 945 49.4
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 2.1e-244 849.7 936 50.2
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 4.6e-244 848.6 937 49.5
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 2.5e-242 842.8 988 48.0
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 4.3e-242 842.0 916 50.5
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 4.4e-239 832.0 943 48.9
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 1.9e-237 826.6 936 49.4
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 9.3e-237 824.3 939 49.3
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 1.7e-230 803.5 874 51.3
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 6.4e-230 801.6 921 49.3
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 5.6e-226 788.5 826 51.8
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 6.9e-224 781.6 963 46.4
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 2.2e-222 776.5 953 46.8
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 1.4e-221 773.9 960 46.9
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 1.8e-219 766.9 965 45.9
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 8.7e-219 764.6 984 45.6
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 4.3e-218 762.3 806 53.2
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.2e-215 754.2 961 45.8
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.0e-214 751.1 969 45.8
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 1.4e-213 747.3 933 45.7
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 7.9e-212 741.5 804 51.4
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 6.7e-211 738.4 879 47.2
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 1.3e-201 707.6 933 44.1
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 4.5e-199 699.1 801 50.6
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 2.2e-198 696.8 966 43.6
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 1.9e-197 693.7 945 43.2
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 7.2e-197 691.8 967 44.2
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 1.8e-195 687.2 968 44.1
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 8.8e-195 684.9 972 44.0
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 7.4e-194 681.8 961 42.5
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 2.4e-192 676.8 889 44.9
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 3.2e-189 666.4 866 44.2
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 3.2e-189 666.4 881 44.6
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 3.5e-183 646.4 725 49.2
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 9.4e-181 638.3 581 58.2
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.6e-180 636.3 581 58.0
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 2.0e-175 620.5 1038 38.5
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 4.0e-171 606.3 736 46.6
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.8e-169 600.1 850 42.1
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 2.1e-164 583.9 647 51.6
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 8.3e-161 572.0 680 49.1
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 7.3e-157 558.9 857 42.2
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.7e-153 547.7 771 44.0
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 9.5e-149 531.9 908 38.5
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 1.2e-148 531.6 660 44.4
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 6.8e-147 525.8 811 39.8
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 1.7e-145 521.2 662 44.9
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 1.4e-136 491.5 1017 34.6
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 5.1e-134 483.0 775 39.4
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 8.9e-131 472.2 933 34.8
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 5.8e-130 469.5 674 42.9
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 1.4e-128 464.9 674 42.7
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 2.1e-127 461.1 829 35.8
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 7.8e-127 459.1 997 33.1
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 3.1e-123 447.2 482 52.5
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 3.8e-121 440.3 842 34.1
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 1.4e-115 421.8 690 38.7
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 4.5e-114 416.8 689 38.6
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 1.1e-112 412.1 594 41.8
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.0e-110 405.6 549 43.7
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 2.4e-107 394.4 595 41.3
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.2e-105 387.9 510 44.9
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 4.6e-95 353.6 357 53.5
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 8.7e-94 349.4 255 67.5
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 4.8e-92 343.6 258 65.9
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.2e-79 302.4 565 36.8
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.8e-73 280.8 351 48.1
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 4.7e-71 273.9 559 36.1
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 5.9e-66 256.9 1200 24.1
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 2.5e-64 251.5 344 43.6
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 2.7e-63 248.1 334 42.2
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 1.1e-59 236.1 257 48.6
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 5.2e-54 217.2 210 52.9
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 2.7e-50 204.9 140 70.0
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 8.9e-46 189.9 270 42.2
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 1.1e-43 183.0 156 58.3
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 5.4e-43 180.6 306 37.6
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 4.6e-42 177.6 196 46.4
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 6.6e-41 173.7 138 63.0
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 3.3e-40 171.4 226 42.5
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 5.0e-33 147.5 142 57.0
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 2.4e-27 128.6 115 53.9
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 2.7e-26 125.2 226 35.4
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 3.0e-25 121.7 94 62.8
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 1.5e-24 119.4 400 27.5
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 9.5e-24 116.7 151 47.7
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 3.6e-23 114.8 229 36.7
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 4.0e-22 111.3 87 63.2
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 3.9e-17 94.7 283 29.0
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 5.1e-17 94.4 86 55.8
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 1.6e-15 89.4 125 39.2
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 6.2e-15 87.4 67 61.2
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 4.0e-14 84.7 150 36.0
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 8.9e-14 83.6 150 35.3
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 9.9e-13 80.1 105 44.8
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 2.2e-12 79.0 66 56.1
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 3.3e-08 65.1 119 35.3
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 3.3e-08 65.1 130 33.1
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 3.3e-08 65.1 115 35.7
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 1.3e-07 63.2 223 27.8
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 2.8e-07 62.0 85 41.2
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 3.6e-07 61.6 85 41.2
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 3.6e-07 61.6 85 41.2
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 1.1e-06 60.1 85 40.0
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 1.4e-06 59.7 133 30.8
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 2.4e-06 58.9 81 42.0


User provided reference genes

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