Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 2.7e-291 1004.6 500 100.0
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 2.4e-287 991.5 500 98.8
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 6.4e-184 647.9 494 66.2
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 6.2e-171 604.7 487 63.9
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 3.4e-153 545.8 488 58.0
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 4.2e-151 538.9 488 58.0
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 1.9e-148 530.0 497 56.5
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 2.1e-147 526.6 502 57.4
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 2.8e-147 526.2 496 55.2
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 6.9e-146 521.5 488 56.1
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.1e-143 514.2 479 55.7
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 9.3e-143 511.1 516 53.3
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 2.3e-141 506.5 487 54.2
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 3.9e-141 505.8 492 54.1
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 1.4e-138 497.3 490 52.4
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 4.1e-138 495.7 488 52.7
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 1.5e-137 493.8 490 54.5
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 7.7e-137 491.5 497 53.7
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 1.1e-135 487.6 482 53.1
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 1.8e-133 480.3 508 50.0
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 8.8e-133 478.0 487 52.8
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 9.7e-132 474.6 487 52.4
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 6.3e-131 471.9 545 47.2
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 1.4e-130 470.7 387 59.9
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.4e-130 470.7 486 51.4
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 4.1e-130 469.2 487 53.2
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 1.2e-129 467.6 493 48.9
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 1.5e-129 467.2 546 46.7
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 3.4e-129 466.1 498 50.8
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 4.5e-129 465.7 560 46.4
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 5.9e-129 465.3 480 52.3
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 1.3e-128 464.2 479 49.5
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 1.4e-127 460.7 497 48.9
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 1.9e-127 460.3 495 48.5
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 1.2e-126 457.6 478 48.7
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 3.9e-125 452.6 488 48.8
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 3.9e-125 452.6 486 50.0
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 5.1e-125 452.2 500 46.4
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 6.7e-125 451.8 495 47.5
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 2.0e-124 450.3 481 48.9
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 2.6e-124 449.9 492 47.8
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 3.3e-124 449.5 500 46.2
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 9.7e-124 448.0 414 53.9
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 2.8e-123 446.4 433 53.8
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 4.8e-123 445.7 522 46.0
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 6.3e-123 445.3 484 48.6
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 1.8e-122 443.7 498 49.0
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 1.8e-122 443.7 491 48.1
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 2.4e-122 443.4 485 47.2
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 2.4e-122 443.4 485 49.1
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 2.4e-122 443.4 488 49.4
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 3.1e-122 443.0 498 48.6
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 1.5e-121 440.7 496 47.4
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 1.5e-121 440.7 495 46.9
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 2.0e-121 440.3 587 42.4
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 7.7e-121 438.3 484 47.9
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 2.9e-120 436.4 493 45.8
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 6.5e-120 435.3 487 46.8
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 9.4e-119 431.4 496 45.8
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.2e-118 431.0 605 41.0
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 2.1e-118 430.3 589 41.3
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 4.7e-118 429.1 594 41.9
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 4.7e-118 429.1 478 46.7
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 1.0e-117 427.9 489 45.6
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 5.2e-117 425.6 452 48.9
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 6.7e-117 425.2 363 58.4
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.1e-116 424.5 490 47.8
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 4.4e-116 422.5 542 45.6
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 5.7e-116 422.2 268 72.8
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.7e-115 420.6 501 47.5
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 2.8e-115 419.9 493 48.7
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 6.3e-115 418.7 413 51.8
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 1.1e-114 417.9 623 40.9
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 4.1e-114 416.0 494 47.4
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 5.3e-114 415.6 470 46.6
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 7.0e-114 415.2 501 43.9
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 2.7e-110 403.3 494 48.2
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 1.2e-108 397.9 490 45.1
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 7.5e-108 395.2 242 72.3
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 2.2e-107 393.7 268 68.3
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 6.3e-107 392.1 242 71.9
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 8.3e-107 391.7 502 45.8
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 1.4e-106 391.0 488 45.9
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 2.4e-106 390.2 423 47.0
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 2.7e-105 386.7 496 43.3
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 3.5e-105 386.3 506 43.3
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 2.2e-104 383.6 505 44.0
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 5.0e-104 382.5 501 44.5
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 6.5e-104 382.1 495 44.8
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 8.5e-104 381.7 495 44.8
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 1.1e-103 381.3 491 42.6
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 1.8e-101 374.0 475 46.7
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 6.8e-101 372.1 472 45.3
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 8.8e-101 371.7 518 42.7
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 7.5e-100 368.6 482 44.6
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 4.9e-99 365.9 520 42.3
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 9.1e-98 361.7 492 42.5
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 2.7e-97 360.1 256 62.9
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 5.9e-97 359.0 316 57.3
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 5.9e-97 359.0 260 65.0
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 7.7e-97 358.6 316 57.0
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.9e-95 354.0 389 51.4
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 1.9e-95 354.0 366 51.6
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 4.7e-94 349.4 372 50.5
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 2.0e-92 344.0 444 44.4
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 2.2e-91 340.5 487 41.3
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 2.2e-91 340.5 450 45.1
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 1.0e-88 331.6 592 38.3
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 8.6e-88 328.6 359 52.6
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 2.5e-87 327.0 371 49.9
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 4.4e-84 316.2 416 44.5
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 4.4e-84 316.2 263 57.0
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.4e-82 310.5 469 41.6
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 3.0e-80 303.5 485 40.6
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 6.2e-78 295.8 474 40.1
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.1e-77 295.0 470 38.3
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 5.2e-77 292.7 255 56.1
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 6.8e-77 292.4 500 36.4
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 9.8e-76 288.5 200 64.0
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 2.2e-75 287.3 511 35.2
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 2.9e-75 287.0 436 40.4
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 2.1e-73 280.8 384 41.9
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 3.5e-73 280.0 390 39.5
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 5.8e-68 262.7 270 49.3
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 1.2e-60 238.4 311 46.3
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 4.4e-60 236.5 184 59.8
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 2.9e-51 207.2 133 68.4
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 1.4e-50 204.9 433 35.8
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 5.6e-47 193.0 301 38.5
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 6.7e-40 169.5 184 44.0
Lj1A1166G81 Lonicera japonica HOM05D004664 ORTHO05D005526 1.3e-38 165.2 237 46.8
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 1.1e-37 162.2 195 46.7
Lj6C128G4 Lonicera japonica HOM05D004664 ORTHO05D005526 8.4e-35 152.5 235 41.7
Cc09_g09380 Coffea canephora HOM05D004664 ORTHO05D005526 2.3e-32 144.4 263 39.2
GSVIVG01004331001 Vitis vinifera HOM05D004664 ORTHO05D005526 5.3e-29 133.3 238 40.3
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 4.5e-28 130.2 164 44.5
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 6.1e-25 119.8 159 42.1
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 3.8e-19 100.5 118 48.3
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 6.5e-19 99.8 75 58.7
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 8.5e-19 99.4 114 40.4
Nn1g08309 Nelumbo nucifera HOM05D004664 ORTHO05D005526 7.2e-18 96.3 106 51.9
CiPaw.09G112900 Carya illinoinensis HOM05D004664 ORTHO05D005526 9.4e-18 95.9 199 42.2
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 6.1e-17 93.2 64 60.9
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 7.9e-17 92.8 63 61.9
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 2.5e-15 87.8 74 55.4
GSVIVG01004440001 Vitis vinifera HOM05D004664 ORTHO05D005526 3.4e-12 77.4 105 45.7
GSVIVG01004113001 Vitis vinifera HOM05D004664 ORTHO05D005526 5.9e-12 76.6 88 51.1
Cre15.g636650 Chlamydomonas reinhardtii HOM05D004664 ORTHO05D005526 2.0e-07 61.6 122 31.1
ECA237G0001 Erigeron canadensis HOM05D004664 ORTHO05D005526 7.4e-07 59.7 84 39.3
SHI14289 Sapria himalayana HOM05D004664 ORTHO05D005526 1.7e-06 58.5 102 36.3


User provided reference genes

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