Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 1.1e-163 580.1 351 100.0
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 9.1e-161 570.5 351 96.0
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 2.1e-133 479.6 334 85.6
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 2.4e-129 466.1 338 79.6
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 9.2e-129 464.2 338 79.3
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 3.9e-127 458.8 330 83.0
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 3.3e-126 455.7 336 78.9
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 6.8e-124 448.0 334 77.5
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 2.0e-123 446.4 343 78.1
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 2.9e-122 442.6 332 75.6
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 8.3e-122 441.0 333 81.4
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 3.2e-121 439.1 330 78.2
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 4.1e-121 438.7 330 81.2
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 9.2e-121 437.6 240 88.8
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 9.2e-121 437.6 337 76.9
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 1.6e-120 436.8 346 77.5
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 3.5e-120 435.6 337 78.9
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 6.0e-120 434.9 321 80.7
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 7.8e-120 434.5 240 89.2
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 7.8e-120 434.5 240 89.2
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 7.8e-120 434.5 240 88.8
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 1.3e-119 433.7 334 81.1
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 1.3e-119 433.7 334 81.1
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 1.7e-119 433.3 332 78.3
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 2.3e-119 433.0 241 88.4
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 2.3e-119 433.0 332 76.5
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 3.9e-119 432.2 240 88.8
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 5.1e-119 431.8 241 89.2
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 6.6e-119 431.4 339 79.4
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 8.6e-119 431.0 334 74.6
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 8.6e-119 431.0 241 88.0
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 1.1e-118 430.6 335 74.3
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 1.1e-118 430.6 334 80.8
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 1.1e-118 430.6 238 89.5
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 1.5e-118 430.3 240 89.2
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.9e-118 429.9 346 74.9
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 1.9e-118 429.9 240 87.9
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 1.9e-118 429.9 332 75.3
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 2.5e-118 429.5 240 88.3
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 2.5e-118 429.5 334 75.1
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 3.3e-118 429.1 332 78.6
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 4.3e-118 428.7 346 74.9
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 9.5e-118 427.6 241 88.4
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.2e-117 427.2 316 81.0
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.2e-117 427.2 316 81.0
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 1.2e-117 427.2 240 87.5
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 2.1e-117 426.4 241 88.8
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 2.8e-117 426.0 331 79.2
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 3.6e-117 425.6 335 76.1
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 4.7e-117 425.2 236 88.6
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 6.2e-117 424.9 240 87.1
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 8.1e-117 424.5 337 76.3
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 8.1e-117 424.5 333 77.2
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 1.8e-116 423.3 240 86.7
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 2.3e-116 422.9 221 92.8
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 3.1e-116 422.5 350 76.9
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 3.1e-116 422.5 332 78.3
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 4.0e-116 422.2 240 85.8
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 5.2e-116 421.8 240 86.2
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 5.2e-116 421.8 240 86.2
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 5.2e-116 421.8 333 76.3
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 6.8e-116 421.4 331 75.5
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 1.2e-115 420.6 332 75.6
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 1.5e-115 420.2 332 78.3
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 2.0e-115 419.9 240 88.3
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 5.8e-115 418.3 336 75.6
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 7.6e-115 417.9 334 77.8
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 1.7e-114 416.8 334 76.9
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 8.3e-114 414.5 350 76.9
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 8.3e-114 414.5 334 76.6
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 1.1e-113 414.1 243 86.4
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 1.1e-113 414.1 243 86.4
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 2.4e-113 412.9 222 90.5
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 3.2e-113 412.5 337 76.9
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 7.1e-113 411.4 220 90.5
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 9.2e-113 411.0 332 77.4
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 3.0e-111 406.0 240 84.6
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 7.3e-110 401.4 230 84.8
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 9.6e-110 401.0 402 62.7
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 9.6e-110 401.0 220 88.2
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 1.6e-109 400.2 230 85.7
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 2.8e-109 399.4 334 73.1
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 3.6e-109 399.1 229 85.6
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 1.1e-108 397.5 230 85.7
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 1.4e-108 397.1 411 62.0
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 3.1e-108 396.0 230 84.3
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 1.5e-107 393.7 230 83.9
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 2.0e-107 393.3 232 83.6
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 7.6e-107 391.3 228 85.1
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 7.6e-107 391.3 241 80.1
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 8.4e-106 387.9 222 84.2
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 8.4e-106 387.9 222 84.2
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 8.4e-106 387.9 230 83.5
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 1.1e-105 387.5 222 84.2
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 1.1e-105 387.5 222 84.2
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.9e-105 386.7 233 82.4
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 5.4e-105 385.2 234 81.6
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.2e-104 384.0 241 78.4
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 4.6e-104 382.1 240 78.8
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 6.6e-103 378.3 334 71.3
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 6.6e-103 378.3 241 78.4
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 8.7e-103 377.9 223 83.4
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 1.1e-97 360.9 208 86.5
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 1.2e-96 357.5 287 77.0
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 1.0e-95 354.4 241 75.1
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 1.9e-89 333.6 242 71.1
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 3.9e-87 325.9 236 69.9
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 1.9e-86 323.6 342 54.1
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 2.8e-85 319.7 181 86.7
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 3.4e-83 312.8 229 69.0
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 5.8e-83 312.0 224 72.8
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 1.3e-79 300.8 176 84.7
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 2.8e-77 293.1 334 62.9
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 1.4e-76 290.8 568 37.1
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 5.0e-74 282.3 218 64.7
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 4.2e-73 279.3 248 64.5
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 1.8e-71 273.9 176 79.5
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 3.0e-71 273.1 213 68.5
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 1.9e-70 270.4 184 73.4
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 1.0e-66 258.1 147 87.8
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 1.5e-62 244.2 132 90.9
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 1.2e-59 234.6 230 72.6
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 6.1e-56 222.2 220 55.9
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 1.4e-55 221.1 234 67.9
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 9.1e-52 208.4 189 60.8
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 3.5e-51 206.5 204 73.0
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 1.3e-50 204.5 108 92.6
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 1.7e-50 204.1 108 89.8
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 3.8e-50 203.0 107 91.6
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 9.4e-49 198.4 107 89.7
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 1.6e-48 197.6 136 75.0
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.8e-47 194.1 107 86.9
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 1.1e-46 191.4 102 90.2
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 7.4e-46 188.7 107 86.0
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 2.8e-45 186.8 210 71.0
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 1.5e-41 174.5 92 90.2
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 1.2e-40 171.4 186 66.1
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 2.1e-40 170.6 95 88.4
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 2.7e-40 170.2 136 66.2
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 3.6e-40 169.9 88 89.8
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 8.8e-39 165.2 95 86.3
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 3.6e-32 143.3 83 81.9
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 2.3e-31 140.6 71 93.0
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 2.3e-31 140.6 71 93.0
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 3.0e-23 113.6 58 94.8
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 4.9e-21 106.3 91 67.0
Haze_13658 Corylus avellana HOM05D004689 ORTHO05D023802 1.5e-17 94.7 155 58.7
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.8e-15 87.8 119 49.6
MSTRG.5777 Avicennia marina HOM05D004689 ORTHO05D023802 2.0e-11 74.3 131 54.2
Haze_08899 Corylus avellana HOM05D004689 ORTHO05D165887 7.8e-11 72.4 155 61.9
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 8.6e-10 68.9 103 46.6
Haze_05345 Corylus avellana HOM05D004689 ORTHO05D023802 7.3e-09 65.9 133 60.9
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 9.5e-09 65.5 38 84.2
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 1.2e-08 65.1 38 84.2
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 2.0e-06 57.8 44 63.6


User provided reference genes

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