Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 6.0e-265 917.1 530 100.0
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 6.2e-262 907.1 530 98.5
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 4.6e-172 608.6 517 72.9
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 7.3e-162 574.7 529 68.6
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 1.4e-160 570.5 530 67.9
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 5.4e-157 558.5 528 68.2
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 7.1e-157 558.1 522 62.1
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 9.2e-157 557.8 520 58.3
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 5.6e-154 548.5 546 64.5
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 2.8e-153 546.2 524 59.5
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 1.8e-152 543.5 527 56.2
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 2.0e-151 540.0 524 54.6
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 2.6e-151 539.7 522 56.3
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 5.8e-151 538.5 523 57.6
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 1.3e-150 537.3 527 65.1
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 6.4e-150 535.0 524 55.5
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 8.4e-150 534.6 514 65.0
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 1.4e-149 533.9 524 57.3
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 9.2e-149 531.2 522 57.7
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 6.0e-148 528.5 522 58.2
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 1.0e-147 527.7 517 63.4
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 1.7e-147 526.9 526 54.9
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 1.7e-147 526.9 526 54.8
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 2.3e-147 526.6 532 55.6
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 3.0e-147 526.2 545 56.5
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 3.9e-147 525.8 532 56.0
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 3.9e-147 525.8 526 54.9
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 5.1e-147 525.4 523 64.1
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 5.1e-147 525.4 526 62.7
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 2.5e-146 523.1 527 63.0
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 2.5e-146 523.1 527 63.0
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 2.5e-146 523.1 514 62.8
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 3.3e-146 522.7 514 62.8
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 4.3e-146 522.3 514 62.6
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 7.3e-146 521.5 540 62.0
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 9.6e-146 521.2 514 62.6
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 1.2e-145 520.8 523 53.7
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 1.2e-145 520.8 545 55.6
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 2.1e-145 520.0 522 63.0
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 2.1e-145 520.0 524 57.4
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 3.6e-145 519.2 514 63.8
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 4.7e-145 518.8 531 63.7
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 8.1e-145 518.1 518 62.9
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 8.1e-145 518.1 518 62.5
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 2.4e-144 516.5 530 53.2
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 2.4e-144 516.5 530 61.7
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 4.0e-144 515.8 514 63.6
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 5.2e-144 515.4 531 63.5
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 6.9e-144 515.0 532 53.2
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 6.9e-144 515.0 524 54.2
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 2.0e-143 513.5 541 60.8
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 3.8e-142 509.2 494 65.0
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 3.8e-142 509.2 526 52.1
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 6.4e-142 508.4 544 60.7
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 6.4e-142 508.4 528 60.8
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.1e-141 507.7 532 54.9
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 1.1e-141 507.7 527 52.2
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 3.2e-141 506.1 544 60.5
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 3.2e-141 506.1 519 53.4
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 4.2e-141 505.8 519 53.6
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 4.2e-141 505.8 519 53.6
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 2.7e-140 503.1 533 52.5
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 4.6e-140 502.3 541 60.8
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 7.8e-140 501.5 525 51.4
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 7.8e-140 501.5 525 51.4
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 5.1e-139 498.8 535 59.8
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 2.5e-138 496.5 531 53.5
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 5.6e-138 495.4 532 61.7
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 4.8e-137 492.3 531 51.8
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 6.2e-137 491.9 519 53.6
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 1.4e-136 490.7 525 52.6
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 1.8e-136 490.3 532 51.5
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 5.3e-136 488.8 537 50.5
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 1.5e-135 487.3 476 53.4
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 3.8e-134 482.6 521 60.1
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 3.8e-134 482.6 524 61.5
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 2.4e-133 479.9 524 50.8
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 7.1e-133 478.4 523 49.3
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 1.2e-132 477.6 533 49.3
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 6.0e-132 475.3 526 52.9
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 3.9e-131 472.6 533 48.6
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 5.1e-131 472.2 525 49.5
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 1.1e-130 471.1 523 49.9
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 1.6e-129 467.2 523 52.4
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 3.7e-129 466.1 524 49.8
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 6.2e-129 465.3 523 59.1
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 1.4e-128 464.2 526 49.2
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 1.4e-128 464.2 526 49.4
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 2.0e-127 460.3 520 59.8
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 4.5e-127 459.1 527 48.4
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 1.7e-126 457.2 523 48.2
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 6.4e-126 455.3 532 47.0
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 9.3e-125 451.4 527 47.8
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 1.8e-123 447.2 527 47.2
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 1.8e-123 447.2 526 47.3
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 1.1e-122 444.5 527 47.1
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 1.8e-120 437.2 526 58.6
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 2.6e-119 433.3 508 56.5
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 7.6e-119 431.8 521 48.6
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 1.3e-118 431.0 521 49.1
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 9.7e-114 414.8 544 53.1
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 1.8e-112 410.6 324 62.7
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 5.0e-110 402.5 532 46.2
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 5.0e-110 402.5 534 45.1
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 3.7e-105 386.3 520 44.0
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 6.1e-100 369.0 521 42.8
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 1.4e-99 367.9 530 42.1
Sc17g0005180 Simmondsia chinensis HOM05D005544 ORTHO05D007303 8.8e-83 312.0 380 61.8
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 1.2e-82 311.6 517 45.5
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 1.4e-75 288.1 534 44.4
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 1.8e-75 287.7 269 55.4
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 5.9e-71 272.7 515 37.5
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 1.2e-68 265.0 525 45.3
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 2.4e-64 250.8 332 42.2
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 2.0e-63 247.7 395 39.2
Cre03.g196850 Chlamydomonas reinhardtii HOM05D005544 ORTHO05D007303 1.4e-56 224.9 507 32.1
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 3.0e-54 217.2 310 44.2
PRCOL_00005139 Prasinoderma coloniale HOM05D005544 ORTHO05D007303 7.3e-45 186.0 526 27.2
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 8.1e-44 182.6 400 30.5
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 3.2e-40 170.6 185 51.4
PGSC0003DMG400036093 Solanum tuberosum HOM05D005544 ORTHO05D007303 8.4e-33 146.0 97 69.1
Hma1.2p1_3416F.1_g335940 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 7.1e-32 142.9 310 33.9
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 7.6e-26 122.9 113 55.8
C04p71990 Brassica napus HOM05D002853 ORTHO05D003030 1.7e-25 121.7 109 56.9
Cfa022606 Carpinus fangiana HOM05D005544 ORTHO05D007303 2.9e-25 120.9 531 25.4
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 1.9e-24 118.2 204 37.3
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 7.1e-24 116.3 238 38.7
Sc17g0005170 Simmondsia chinensis HOM05D005544 ORTHO05D007303 1.6e-23 115.2 98 58.2
BolC7t40575H Brassica oleracea HOM05D005544 ORTHO05D027614 1.5e-18 98.6 152 42.1
A07p00730 Brassica napus HOM05D005544 ORTHO05D027614 4.5e-18 97.1 152 42.1
CAN.G708.1 Capsicum annuum HOM05D005544 ORTHO05D027614 5.4e-16 90.1 70 65.7
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 1.6e-15 88.6 137 40.1
Nn3g19125 Nelumbo nucifera HOM05D005544 ORTHO05D007303 9.0e-11 72.8 53 67.9
SEGI_41146 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 1.3e-09 68.9 70 42.9
CAN.G111.2 Capsicum annuum HOM05D000002 ORTHO05D000001 1.4e-08 65.5 105 32.4
CBR_g31026 Chara braunii HOM05D005544 ORTHO05D007303 2.1e-07 61.6 81 44.4


User provided reference genes

Program Settings