Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 2.4e-298 1028.1 532 100.0
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 3.0e-296 1021.1 532 99.4
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 9.4e-218 760.4 532 75.2
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 8.0e-217 757.3 535 73.8
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 1.5e-210 736.5 514 73.2
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 1.6e-204 716.5 532 72.0
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 1.5e-202 709.9 537 69.3
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 2.5e-202 709.1 515 73.0
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 9.4e-202 707.2 532 70.7
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 1.6e-201 706.4 535 69.5
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 2.1e-201 706.1 536 70.0
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 1.8e-200 703.0 536 70.0
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 2.3e-200 702.6 535 69.3
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 3.0e-200 702.2 542 69.6
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 5.2e-200 701.4 533 69.6
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 2.6e-199 699.1 539 71.4
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 3.4e-199 698.7 550 67.5
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 5.7e-199 698.0 538 69.7
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 6.3e-198 694.5 557 67.7
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 6.3e-198 694.5 534 70.6
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 8.3e-198 694.1 537 69.3
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 5.4e-197 691.4 541 69.3
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 2.3e-195 686.0 543 67.0
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 1.9e-194 682.9 540 67.0
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 9.5e-194 680.6 535 65.2
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 1.2e-193 680.2 592 63.0
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 1.6e-193 679.9 540 66.9
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 2.8e-193 679.1 465 74.4
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 6.1e-193 677.9 540 66.9
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 8.0e-193 677.6 535 65.0
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 5.2e-192 674.9 559 64.4
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 3.4e-191 672.2 539 67.2
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 4.4e-191 671.8 540 67.6
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 7.5e-191 671.0 560 64.1
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.7e-190 669.8 560 64.1
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 2.2e-190 669.5 550 67.3
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 2.8e-190 669.1 557 65.0
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 3.2e-189 665.6 553 62.6
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 4.1e-189 665.2 532 67.7
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 4.1e-189 665.2 499 70.5
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 5.4e-189 664.8 477 70.6
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 2.7e-188 662.5 458 72.9
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 7.8e-188 661.0 481 71.1
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 1.0e-187 660.6 535 66.0
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 5.0e-187 658.3 444 75.9
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 3.3e-186 655.6 534 65.2
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 1.4e-184 650.2 516 66.3
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 1.4e-184 650.2 546 66.1
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 1.8e-184 649.8 536 63.1
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 3.1e-184 649.0 542 64.6
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 5.2e-184 648.3 452 74.8
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 2.0e-183 646.4 517 65.2
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 4.4e-183 645.2 470 69.6
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 5.8e-183 644.8 541 64.0
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 4.9e-182 641.7 547 66.5
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 4.9e-182 641.7 530 66.8
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 9.2e-181 637.5 534 67.0
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 3.5e-180 635.6 535 64.5
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 3.5e-180 635.6 506 66.4
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 1.0e-179 634.0 536 62.1
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 1.3e-179 633.6 550 62.4
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 3.0e-179 632.5 550 62.2
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 3.9e-179 632.1 536 63.2
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 1.5e-178 630.2 464 70.3
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 2.5e-178 629.4 547 62.2
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 2.5e-178 629.4 547 62.2
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 1.2e-177 627.1 515 66.2
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 1.2e-177 627.1 463 69.8
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 1.6e-177 626.7 479 69.7
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 6.2e-177 624.8 515 66.2
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 6.2e-177 624.8 543 62.6
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 8.1e-177 624.4 524 65.5
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 1.3e-174 617.1 539 64.4
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 2.9e-174 615.9 465 68.8
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 4.9e-174 615.1 517 65.4
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 1.6e-172 610.1 455 68.1
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 6.0e-172 608.2 537 61.8
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 7.8e-172 607.8 532 64.1
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 1.3e-171 607.1 490 65.3
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.7e-171 606.7 585 58.1
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 2.3e-171 606.3 479 70.1
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 5.1e-171 605.1 462 67.7
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 1.1e-170 604.0 512 63.5
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 4.3e-170 602.1 513 63.5
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 6.8e-168 594.7 500 63.8
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 8.9e-168 594.3 519 62.8
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 1.1e-165 587.4 469 68.9
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 2.1e-164 583.2 516 62.0
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 1.4e-160 570.5 470 66.2
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 5.8e-159 565.1 432 67.6
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 2.4e-157 559.7 532 58.8
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 1.1e-152 544.3 381 73.0
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 4.0e-152 542.3 490 61.0
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 1.3e-147 527.3 450 62.2
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 1.3e-147 527.3 502 58.6
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 2.8e-105 386.7 326 62.6
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 3.6e-100 369.8 298 66.1
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 7.5e-90 335.5 267 67.4
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 1.8e-88 330.9 267 67.4
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 7.5e-82 308.9 504 41.1
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 1.6e-76 291.2 167 82.0
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 1.0e-75 288.5 309 54.7
Cpa.g.sc17.57 Carica papaya HOM05D005980 ORTHO05D007618 1.4e-75 288.1 266 59.4
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 1.4e-75 288.1 428 40.4
Cpa.g.c47879 Carica papaya HOM05D005980 ORTHO05D007618 6.8e-67 259.2 199 67.3
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 1.5e-66 258.1 408 39.5
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 2.4e-64 250.8 429 37.8
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 3.9e-54 216.9 125 77.6
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 1.1e-53 215.3 151 71.5
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 9.5e-53 212.2 264 47.3
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 1.6e-52 211.5 125 79.2
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 2.9e-49 200.7 167 67.7
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 1.3e-46 191.8 141 64.5
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 1.4e-40 171.8 249 39.8
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 1.2e-31 142.1 80 81.2
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 7.9e-31 139.4 221 40.3
Cpa.g.sc17.55 Carica papaya HOM05D005980 ORTHO05D007618 6.7e-30 136.3 109 67.0
HanXRQChr10g0301121 Helianthus annuus HOM05D005980 ORTHO05D007618 3.0e-22 110.9 84 63.1
MBI02_g26594_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 1.1e-19 102.4 83 63.9
Glyma.15G091200 Glycine max HOM05D005980 ORTHO05D007618 2.6e-18 97.8 122 49.2
Haze_05663 Corylus avellana HOM05D005980 ORTHO05D007618 1.3e-17 95.5 110 50.0
arahy.Tifrunner.gnm1.ann1.MPA65D Arachis hypogaea HOM05D005980 ORTHO05D007618 2.2e-17 94.7 53 81.1
vmacro03428 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 5.5e-16 90.1 102 53.9
Lsat_1_v5_gn_1_94021 Lactuca sativa HOM05D005980 ORTHO05D007618 6.0e-15 86.7 140 45.0
Actinidia33673 Actinidia chinensis HOM05D005980 ORTHO05D007618 7.4e-13 79.7 132 46.2
Actinidia33672 Actinidia chinensis HOM05D005980 ORTHO05D007618 9.6e-13 79.3 77 58.4
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 4.8e-12 77.0 95 44.2
MD05G1278900 Malus domestica HOM05D005980 ORTHO05D007618 6.9e-11 73.2 56 69.6
MSTRG.16269 Avicennia marina HOM05D005980 ORTHO05D007618 1.2e-10 72.4 45 68.9
Cpa.g.c48158 Carica papaya HOM05D005980 ORTHO05D007618 1.2e-07 62.4 32 87.5


User provided reference genes

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