Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G2905 Papaver somniferum HOM05D001246 ORTHO05D036630 4.3e-53 211.1 107 100.0
PSO384G1296 Papaver somniferum HOM05D001246 ORTHO05D002100 8.4e-25 117.1 83 78.3
PSO339G1334 Papaver somniferum HOM05D001246 ORTHO05D002100 2.7e-23 112.1 83 75.9
TAR623G1514 Trochodendron aralioides HOM05D001246 ORTHO05D002100 2.9e-17 92.0 83 61.4
HanXRQChr09g0249691 Helianthus annuus HOM05D001246 ORTHO05D002100 3.2e-16 88.6 83 57.8
Sc09g0006450 Simmondsia chinensis HOM05D001246 ORTHO05D002100 3.2e-16 88.6 83 56.6
TAR636G0601 Trochodendron aralioides HOM05D001246 ORTHO05D002100 3.2e-16 88.6 83 59.0
TAR636G3665 Trochodendron aralioides HOM05D001246 ORTHO05D002100 3.2e-16 88.6 83 59.0
Dinv31328 Davidia involucrata HOM05D001246 ORTHO05D002100 5.5e-16 87.8 83 57.8
CSS0037036 Camellia sinensis var. sinensis HOM05D001246 ORTHO05D002100 7.1e-16 87.4 83 57.8
CSS0001595 Camellia sinensis var. sinensis HOM05D001246 ORTHO05D002100 1.6e-15 86.3 83 56.6
MELO3C012433.2 Cucumis melo HOM05D001246 ORTHO05D002100 1.6e-15 86.3 88 55.7
Peaxi162Scf00747g00120 Petunia axillaris HOM05D001246 ORTHO05D002100 1.6e-15 86.3 93 50.5
FAN10G1448 Fragaria x ananassa HOM05D001246 ORTHO05D002100 2.1e-15 85.9 86 54.7
TAR629G0106 Trochodendron aralioides HOM05D001246 ORTHO05D002100 2.1e-15 85.9 83 56.6
COL.COLO4_23688 Corchorus olitorius HOM05D001246 ORTHO05D002100 2.7e-15 85.5 83 55.4
Duzib114G0874 Durio zibethinus HOM05D001246 ORTHO05D002100 2.7e-15 85.5 83 54.2
Actinidia32450 Actinidia chinensis HOM05D001246 ORTHO05D002100 3.5e-15 85.1 83 55.4
ClCG05G020960 Citrullus lanatus HOM05D001246 ORTHO05D002100 3.5e-15 85.1 83 56.6
HanXRQChr15g0496651 Helianthus annuus HOM05D001246 ORTHO05D002100 3.5e-15 85.1 85 52.9
Dinv11779 Davidia involucrata HOM05D001246 ORTHO05D002100 4.6e-15 84.7 83 56.6
FvH4_7g19660 Fragaria vesca HOM05D001246 ORTHO05D002100 4.6e-15 84.7 83 56.6
FAN01G2314 Fragaria x ananassa HOM05D001246 ORTHO05D002100 4.6e-15 84.7 83 56.6
FAN03G1090 Fragaria x ananassa HOM05D001246 ORTHO05D002100 4.6e-15 84.7 83 56.6
FAN06G1395 Fragaria x ananassa HOM05D001246 ORTHO05D002100 4.6e-15 84.7 83 56.6
FAN10G1474 Fragaria x ananassa HOM05D001246 ORTHO05D002100 4.6e-15 84.7 83 56.6
MBI10_g18715_MAGBIO Magnolia biondii HOM05D001246 ORTHO05D002100 4.6e-15 84.7 83 55.4
QL08p056049 Quercus lobata HOM05D001246 ORTHO05D002100 4.6e-15 84.7 83 53.0
TWI63G0982 Tripterygium wilfordii HOM05D001246 ORTHO05D002100 4.6e-15 84.7 83 55.4
TAR633G1273 Trochodendron aralioides HOM05D001246 ORTHO05D036630 4.6e-15 84.7 87 52.9
Actinidia38850 Actinidia chinensis HOM05D001246 ORTHO05D002100 6.0e-15 84.3 83 54.2
Prupe.2G214300 Prunus persica HOM05D001246 ORTHO05D002100 6.0e-15 84.3 83 55.4
Sed0005393 Sechium edule HOM05D001246 ORTHO05D002100 6.0e-15 84.3 83 56.6
Aqoxy1G01247 Aquilegia oxysepala HOM05D001246 ORTHO05D002100 7.9e-15 84.0 84 57.1
CsaV3_5G036350 Cucumis sativus L. HOM05D001246 ORTHO05D002100 7.9e-15 84.0 83 56.6
Sed0021392 Sechium edule HOM05D001246 ORTHO05D002100 7.9e-15 84.0 83 55.4
GSVIVG01016286001 Vitis vinifera HOM05D001246 ORTHO05D002100 7.9e-15 84.0 83 55.4
CAN.G694.79 Capsicum annuum HOM05D001246 ORTHO05D002100 1.0e-14 83.6 83 53.0
Potri.010G221700 Populus trichocarpa HOM05D001246 ORTHO05D002100 1.0e-14 83.6 83 54.2
RcHm_v2.0_Chr1g0363481 Rosa chinensis HOM05D001246 ORTHO05D002100 1.0e-14 83.6 83 55.4
Hund12042 Selenicereus undatus HOM05D001246 ORTHO05D002100 1.0e-14 83.6 86 53.5
Solyc05g056030.3 Solanum lycopersicum HOM05D001246 ORTHO05D002100 1.0e-14 83.6 83 53.0
Sopen05g034440 Solanum pennellii HOM05D001246 ORTHO05D002100 1.0e-14 83.6 83 53.0
CiPaw.01G273400 Carya illinoinensis HOM05D001246 ORTHO05D002100 1.3e-14 83.2 83 55.4
Thecc.10G072800 Theobroma cacao HOM05D001246 ORTHO05D002100 1.3e-14 83.2 83 54.2
ECA232G1667 Erigeron canadensis HOM05D001246 ORTHO05D002100 1.8e-14 82.8 83 54.2
MD01G1108800 Malus domestica HOM05D001246 ORTHO05D002100 2.3e-14 82.4 83 54.2
MD07G1175100 Malus domestica HOM05D001246 ORTHO05D002100 2.3e-14 82.4 83 54.2
PGSC0003DMG400023463 Solanum tuberosum HOM05D001246 ORTHO05D002100 2.3e-14 82.4 83 51.8
Potri.008G040500 Populus trichocarpa HOM05D001246 ORTHO05D002100 3.0e-14 82.0 83 53.0
Duzib128G1776 Durio zibethinus HOM05D001246 ORTHO05D002100 3.9e-14 81.6 83 54.2
Manes.10G045300 Manihot esculenta HOM05D001246 ORTHO05D002100 3.9e-14 81.6 83 53.0
ECA233G2902 Erigeron canadensis HOM05D001246 ORTHO05D002100 6.7e-14 80.9 83 54.2
ECA238G2459 Erigeron canadensis HOM05D001246 ORTHO05D002100 6.7e-14 80.9 83 54.2
Peaxi162Scf00156g01213 Petunia axillaris HOM05D001246 ORTHO05D002100 6.7e-14 80.9 83 53.0
Actinidia38275 Actinidia chinensis HOM05D001246 ORTHO05D002100 8.7e-14 80.5 84 54.8
arahy.Tifrunner.gnm1.ann1.PPIL2T Arachis hypogaea HOM05D001246 ORTHO05D002100 8.7e-14 80.5 83 53.0
Glyma.10G211300 Glycine max HOM05D001246 ORTHO05D002100 8.7e-14 80.5 83 54.2
Lsat_1_v5_gn_9_69360 Lactuca sativa HOM05D001246 ORTHO05D002100 8.7e-14 80.5 83 53.0
VMungo0720G0864 Vigna mungo HOM05D001246 ORTHO05D002100 8.7e-14 80.5 83 54.2
arahy.Tifrunner.gnm1.ann1.Q4J3I9 Arachis hypogaea HOM05D001246 ORTHO05D002100 1.1e-13 80.1 82 53.7
A09p47940 Brassica napus HOM05D001246 ORTHO05D002100 1.1e-13 80.1 83 54.2
BraA09t40249Z Brassica rapa HOM05D001246 ORTHO05D002100 1.1e-13 80.1 83 54.2
Migut.F02002 Erythranthe guttata HOM05D001246 ORTHO05D002100 1.1e-13 80.1 83 53.0
Glyma.20G179600 Glycine max HOM05D001246 ORTHO05D002100 1.1e-13 80.1 83 53.0
Lj1A914G41 Lonicera japonica HOM05D001246 ORTHO05D002100 1.1e-13 80.1 83 53.0
AT3G54950 Arabidopsis thaliana HOM05D001246 ORTHO05D002100 1.5e-13 79.7 83 53.0
Ciclev10031470m.g Citrus clementina HOM05D001246 ORTHO05D002100 1.5e-13 79.7 83 54.2
HanXRQChr14g0456931 Helianthus annuus HOM05D001246 ORTHO05D002100 1.5e-13 79.7 83 51.8
Lalb_Chr02g0142161 Lupinus albus HOM05D001246 ORTHO05D002100 1.5e-13 79.7 85 51.8
Nitab4.5_0003144g0010 Nicotiana tabacum HOM05D001246 ORTHO05D002100 1.5e-13 79.7 83 51.8
Rhsim09G0152300 Rhododendron simsii HOM05D001246 ORTHO05D002100 1.5e-13 79.7 83 54.2
SGA_v2.0_scaffold341G49366 Striga asiatica HOM05D001246 ORTHO05D002100 1.5e-13 79.7 83 51.8
MSTRG.9183 Avicennia marina HOM05D001246 ORTHO05D002100 1.9e-13 79.3 83 51.8
Cpa.g.sc53.72 Carica papaya HOM05D001246 ORTHO05D002100 1.9e-13 79.3 83 54.2
Duzib106G0841 Durio zibethinus HOM05D001246 ORTHO05D002100 1.9e-13 79.3 83 53.0
Gohir.A05G412700 Gossypium hirsutum HOM05D001246 ORTHO05D002100 1.9e-13 79.3 85 50.6
Gohir.D04G003300 Gossypium hirsutum HOM05D001246 ORTHO05D002100 1.9e-13 79.3 85 50.6
Atru.chr12.741 Acer truncatum HOM05D001246 ORTHO05D002100 2.5e-13 79.0 83 54.2
Atru.chr12.763 Acer truncatum HOM05D001246 ORTHO05D002100 2.5e-13 79.0 83 54.2
BcaC08g44711 Brassica carinata HOM05D001246 ORTHO05D002100 2.5e-13 79.0 98 45.9
C06p22460 Brassica napus HOM05D001246 ORTHO05D002100 2.5e-13 79.0 98 45.9
C08p30180 Brassica napus HOM05D001246 ORTHO05D002100 2.5e-13 79.0 83 53.0
BolC8t50624H Brassica oleracea HOM05D001246 ORTHO05D002100 2.5e-13 79.0 83 53.0
Gorai.012G004400 Gossypium raimondii HOM05D001246 ORTHO05D002100 2.5e-13 79.0 85 50.6
Nitab4.5_0001029g0020 Nicotiana tabacum HOM05D001246 ORTHO05D002100 2.5e-13 79.0 83 50.6
PGR142G1771 Punica granatum HOM05D001246 ORTHO05D002100 2.5e-13 79.0 83 53.0
TWI38G1451 Tripterygium wilfordii HOM05D001246 ORTHO05D002100 2.5e-13 79.0 83 51.8
Lsat_1_v5_gn_2_114320 Lactuca sativa HOM05D001246 ORTHO05D002100 3.3e-13 78.6 83 51.8
Phvul.007G094300 Phaseolus vulgaris HOM05D001246 ORTHO05D002100 3.3e-13 78.6 83 53.0
Aa31sc43G20 Aethionema arabicum HOM05D001246 ORTHO05D002100 4.3e-13 78.2 83 53.0
Ah.16g106380 Amaranthus hybridus HOM05D001246 ORTHO05D002100 4.3e-13 78.2 83 53.0
Haze_16898 Corylus avellana HOM05D001246 ORTHO05D002100 5.6e-13 77.8 82 54.9
Sabra10G0171600 Salix brachista HOM05D001246 ORTHO05D002100 5.6e-13 77.8 79 53.2
AL5G36060 Arabidopsis lyrata HOM05D001246 ORTHO05D002100 7.4e-13 77.4 83 51.8
arahy.Tifrunner.gnm1.ann1.KDTA1N Arachis hypogaea HOM05D001246 ORTHO05D002100 7.4e-13 77.4 83 56.6
BolC6t37433H Brassica oleracea HOM05D001246 ORTHO05D002100 7.4e-13 77.4 98 44.9
Gohir.A10G206300 Gossypium hirsutum HOM05D001246 ORTHO05D002100 7.4e-13 77.4 85 50.6
Migut.F01775 Erythranthe guttata HOM05D001246 ORTHO05D002100 9.6e-13 77.0 85 50.6
Sp5g07470 Schrenkiella parvula HOM05D001246 ORTHO05D002100 9.6e-13 77.0 83 51.8
CARHR164930 Cardamine hirsuta HOM05D001246 ORTHO05D002100 1.3e-12 76.6 83 51.8
Cfa021505 Carpinus fangiana HOM05D001246 ORTHO05D002100 1.3e-12 76.6 83 54.2
Eucgr.G02825 Eucalyptus grandis HOM05D001246 ORTHO05D002100 1.3e-12 76.6 83 51.8
Lalb_Chr21g0306061 Lupinus albus HOM05D001246 ORTHO05D002100 1.3e-12 76.6 83 50.6
Nitab4.5_0000476g0150 Nicotiana tabacum HOM05D001246 ORTHO05D002100 1.3e-12 76.6 81 51.9
ATR0115G005 Amborella trichopoda HOM05D001246 ORTHO05D002100 1.6e-12 76.3 83 48.2
arahy.Tifrunner.gnm1.ann1.W7LA7X Arachis hypogaea HOM05D001246 ORTHO05D002100 1.6e-12 76.3 83 55.4
BcaB02g09139 Brassica carinata HOM05D001246 ORTHO05D002100 1.6e-12 76.3 83 50.6
BcaC02g12044 Brassica carinata HOM05D001246 ORTHO05D002100 1.6e-12 76.3 83 50.6
A05p07140 Brassica napus HOM05D001246 ORTHO05D002100 1.6e-12 76.3 83 50.6
C04p08530 Brassica napus HOM05D001246 ORTHO05D002100 1.6e-12 76.3 83 50.6
BolC4t22450H Brassica oleracea HOM05D001246 ORTHO05D002100 1.6e-12 76.3 83 50.6
Carub.0005s2156 Capsella rubella HOM05D001246 ORTHO05D002100 1.6e-12 76.3 83 50.6
CiPaw.02G174200 Carya illinoinensis HOM05D001246 ORTHO05D002100 1.6e-12 76.3 83 53.0
SalBow3G0542 Salvia bowleyana HOM05D001246 ORTHO05D002100 1.6e-12 76.3 86 48.8
BraA05t19679Z Brassica rapa HOM05D001246 ORTHO05D002100 2.1e-12 75.9 83 50.6
DCAR_006443 Daucus carota HOM05D001246 ORTHO05D002100 2.1e-12 75.9 83 50.6
Nitab4.5_0013086g0010 Nicotiana tabacum HOM05D001246 ORTHO05D002100 2.1e-12 75.9 83 49.4
TPR.G1906 Trifolium pratense HOM05D001246 ORTHO05D002100 2.1e-12 75.9 83 49.4
CDE07G0356 Ceratophyllum demersum HOM05D001246 ORTHO05D002100 2.8e-12 75.5 83 51.8
Ca_10572_v3 Cicer arietinum L. HOM05D001246 ORTHO05D002100 2.8e-12 75.5 83 49.4
Ca_29595_v3 Cicer arietinum L. HOM05D001246 ORTHO05D002100 2.8e-12 75.5 83 49.4
ClCG08G007460 Citrullus lanatus HOM05D001246 ORTHO05D002100 2.8e-12 75.5 83 53.0
Medtr0368s0010 Medicago truncatula HOM05D001246 ORTHO05D002100 2.8e-12 75.5 83 49.4
A07p22380 Brassica napus HOM05D001246 ORTHO05D002100 3.7e-12 75.1 98 44.9
BraA07t29913Z Brassica rapa HOM05D001246 ORTHO05D002100 3.7e-12 75.1 98 44.9
Gohir.D10G214400 Gossypium hirsutum HOM05D001246 ORTHO05D002100 3.7e-12 75.1 83 50.6
Medtr1g095165 Medicago truncatula HOM05D001246 ORTHO05D002100 3.7e-12 75.1 83 49.4
MSTRG.365 Avicennia marina HOM05D001246 ORTHO05D002100 4.8e-12 74.7 83 49.4
PSO339G3133 Papaver somniferum HOM05D001246 ORTHO05D002100 4.8e-12 74.7 83 51.8
Cc09_g02050 Coffea canephora HOM05D001246 ORTHO05D002100 6.2e-12 74.3 83 51.8
HanXRQChr08g0218941 Helianthus annuus HOM05D001246 ORTHO05D002100 6.2e-12 74.3 83 50.6
Psat6g184320 Pisum sativum HOM05D001246 ORTHO05D002100 6.2e-12 74.3 83 50.6
Sp4g21550 Schrenkiella parvula HOM05D001246 ORTHO05D002100 6.2e-12 74.3 83 50.6
SpUn0018_0120 Schrenkiella parvula HOM05D001246 ORTHO05D002100 6.2e-12 74.3 83 50.6
BcaB01g03608 Brassica carinata HOM05D001246 ORTHO05D002100 8.2e-12 73.9 83 50.6
BcaB01g03657 Brassica carinata HOM05D001246 ORTHO05D002100 8.2e-12 73.9 83 50.6
A03p21970 Brassica napus HOM05D001246 ORTHO05D002100 8.2e-12 73.9 83 50.6
C03p26060 Brassica napus HOM05D001246 ORTHO05D002100 8.2e-12 73.9 83 50.6
BolC3t14990H Brassica oleracea HOM05D001246 ORTHO05D002100 8.2e-12 73.9 83 50.6
BraA03t11432Z Brassica rapa HOM05D001246 ORTHO05D002100 8.2e-12 73.9 83 50.6
Thhalv10010298m.g Eutrema salsugineum HOM05D001246 ORTHO05D002100 8.2e-12 73.9 83 49.4
Lj5g0027760 Lotus japonicus HOM05D001246 ORTHO05D002100 8.2e-12 73.9 83 48.2
EL10Ac2g03250 Beta vulgaris HOM05D001246 ORTHO05D002100 1.1e-11 73.6 83 51.8
BcaB02g07709 Brassica carinata HOM05D001246 ORTHO05D002100 1.1e-11 73.6 83 48.2
Gorai.011G240000 Gossypium raimondii HOM05D001246 ORTHO05D002100 1.1e-11 73.6 85 49.4
CDE04G0881 Ceratophyllum demersum HOM05D001246 ORTHO05D002100 2.4e-11 72.4 83 51.8
SGA_v2.0_scaffold62G21423 Striga asiatica HOM05D001246 ORTHO05D002100 2.4e-11 72.4 83 48.2
Lsat_1_v5_gn_8_19340 Lactuca sativa HOM05D001246 ORTHO05D002100 3.1e-11 72.0 85 44.7
SalBow4G3203 Salvia bowleyana HOM05D001246 ORTHO05D002100 3.1e-11 72.0 85 47.1
MELO3C019791.2 Cucumis melo HOM05D001246 ORTHO05D002100 4.0e-11 71.6 83 51.8
unitig_37.g12302 Utricularia gibba HOM05D001246 ORTHO05D002100 4.0e-11 71.6 86 46.5
AL4G36530 Arabidopsis lyrata HOM05D001246 ORTHO05D002100 5.3e-11 71.2 83 48.2
AT2G39220 Arabidopsis thaliana HOM05D001246 ORTHO05D002100 5.3e-11 71.2 83 48.2
CARHR133980 Cardamine hirsuta HOM05D001246 ORTHO05D002100 5.3e-11 71.2 83 48.2
Thhalv10016579m.g Eutrema salsugineum HOM05D001246 ORTHO05D002100 5.3e-11 71.2 83 48.2
Nn2g13089 Nelumbo nucifera HOM05D001246 ORTHO05D002100 5.3e-11 71.2 83 49.4
THA.LOC104806083 Tarenaya hassleriana HOM05D001246 ORTHO05D002100 5.3e-11 71.2 83 48.2
Carub.0004s2126 Capsella rubella HOM05D001246 ORTHO05D002100 6.9e-11 70.9 83 48.2
Oeu033850.2 Olea europaea HOM05D001246 ORTHO05D002100 6.9e-11 70.9 89 47.2
Sed0021736 Sechium edule HOM05D001246 ORTHO05D002100 6.9e-11 70.9 83 50.6
HPP92_012664 Vanilla planifolia HOM05D001246 ORTHO05D002100 1.5e-10 69.7 83 48.2
Sabra08G0027600 Salix brachista HOM05D001246 ORTHO05D002100 2.0e-10 69.3 83 47.0
MSTRG.27457 Avicennia marina HOM05D001246 ORTHO05D002100 2.6e-10 68.9 83 49.4
Lalb_Chr06g0162281 Lupinus albus HOM05D001246 ORTHO05D002100 3.4e-10 68.6 75 49.3
MD16G1222700 Malus domestica HOM05D001246 ORTHO05D036630 7.6e-10 67.4 39 79.5
Aa31LG5G20220 Aethionema arabicum HOM05D001246 ORTHO05D002100 1.3e-09 66.6 83 45.8
Eucgr.J01089 Eucalyptus grandis HOM05D001246 ORTHO05D002100 2.2e-09 65.9 82 41.5
Oeu027480.1 Olea europaea HOM05D001246 ORTHO05D002100 2.2e-09 65.9 83 45.8
THA.LOC104809879 Tarenaya hassleriana HOM05D001246 ORTHO05D002100 2.2e-09 65.9 93 41.9
HanXRQChr12g0368831 Helianthus annuus HOM05D001246 ORTHO05D002100 4.9e-09 64.7 72 48.6
unitig_46.g18590 Utricularia gibba HOM05D001246 ORTHO05D002100 8.4e-09 63.9 85 47.1
AL7G22450 Arabidopsis lyrata HOM05D001246 ORTHO05D002100 7.1e-08 60.8 93 38.7
Carub.0004s1483 Capsella rubella HOM05D001246 ORTHO05D002100 7.1e-08 60.8 93 38.7
CARHR237700 Cardamine hirsuta HOM05D001246 ORTHO05D002100 7.1e-08 60.8 93 38.7
AT4G29800 Arabidopsis thaliana HOM05D001246 ORTHO05D002100 1.2e-07 60.1 93 37.6
C01p09400 Brassica napus HOM05D001246 ORTHO05D002100 1.6e-07 59.7 93 37.6
BolC1t00928H Brassica oleracea HOM05D001246 ORTHO05D002100 1.6e-07 59.7 93 37.6
Sp7g27610 Schrenkiella parvula HOM05D001246 ORTHO05D002100 1.6e-07 59.7 98 36.7
Aa31LG2G20740 Aethionema arabicum HOM05D001246 ORTHO05D002100 3.5e-07 58.5 93 37.6
BcaC09g51758 Brassica carinata HOM05D001246 ORTHO05D002100 3.5e-07 58.5 93 36.6
Thhalv10027483m.g Eutrema salsugineum HOM05D001246 ORTHO05D002100 6.0e-07 57.8 93 37.6
Zm00001eb011000 Zea mays HOM05D001246 ORTHO05D002100 6.0e-07 57.8 75 45.3
BraA01t00784Z Brassica rapa HOM05D001246 ORTHO05D002100 7.9e-07 57.4 93 36.6
A01p08360 Brassica napus HOM05D001246 ORTHO05D002100 1.8e-06 56.2 93 35.5
Aqoxy4G00200 Aquilegia oxysepala HOM05D001246 ORTHO05D002100 8.7e-06 53.9 63 42.9


User provided reference genes

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