Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G1020 Papaver somniferum HOM05D005087 ORTHO05D006427 1.1e-95 353.2 175 100.0
PSO339G3397 Papaver somniferum HOM05D005087 ORTHO05D006427 1.9e-90 335.9 173 94.8
FvH4_7g01640 Fragaria vesca HOM05D005087 ORTHO05D006427 5.1e-80 301.2 169 87.0
FAN03G0563 Fragaria x ananassa HOM05D005087 ORTHO05D006427 5.1e-80 301.2 169 87.0
FAN10G1149 Fragaria x ananassa HOM05D005087 ORTHO05D006427 5.1e-80 301.2 169 87.0
Lj9C640G8 Lonicera japonica HOM05D005087 ORTHO05D006427 8.8e-80 300.4 169 85.8
QL04p009808 Quercus lobata HOM05D005087 ORTHO05D006427 8.8e-80 300.4 169 86.4
Peaxi162Scf00694g00319 Petunia axillaris HOM05D005087 ORTHO05D006427 1.5e-79 299.7 173 83.8
TAR623G1255 Trochodendron aralioides HOM05D005087 ORTHO05D006427 2.0e-79 299.3 169 85.8
Ciclev10030582m.g Citrus clementina HOM05D005087 ORTHO05D006427 3.3e-79 298.5 169 85.8
FAN06G3789 Fragaria x ananassa HOM05D005087 ORTHO05D006427 3.3e-79 298.5 166 88.0
CSS0029256 Camellia sinensis var. sinensis HOM05D005087 ORTHO05D006427 4.3e-79 298.1 168 86.3
Actinidia21540 Actinidia chinensis HOM05D005087 ORTHO05D006427 7.4e-79 297.4 168 85.1
RcHm_v2.0_Chr1g0317911 Rosa chinensis HOM05D005087 ORTHO05D006427 7.4e-79 297.4 169 85.8
Cpa.g.sc125.40 Carica papaya HOM05D005087 ORTHO05D006427 1.3e-78 296.6 171 84.2
Prupe.2G022000 Prunus persica HOM05D005087 ORTHO05D006427 1.7e-78 296.2 169 85.8
Sed0026614 Sechium edule HOM05D005087 ORTHO05D006427 1.7e-78 296.2 169 85.2
Haze_03133 Corylus avellana HOM05D005087 ORTHO05D006427 2.2e-78 295.8 169 85.8
Haze_03136 Corylus avellana HOM05D005087 ORTHO05D006427 2.2e-78 295.8 169 85.8
Cfa022636 Carpinus fangiana HOM05D005087 ORTHO05D006427 2.8e-78 295.4 172 84.3
GSVIVG01032195001 Vitis vinifera HOM05D005087 ORTHO05D006427 2.8e-78 295.4 168 85.1
CiPaw.14G002700 Carya illinoinensis HOM05D005087 ORTHO05D006427 3.7e-78 295.0 169 85.8
CsaV3_7G030750 Cucumis sativus L. HOM05D005087 ORTHO05D006427 3.7e-78 295.0 169 84.0
PSO210G7144 Papaver somniferum HOM05D005087 ORTHO05D006427 4.8e-78 294.7 164 86.0
MELO3C023581.2 Cucumis melo HOM05D005087 ORTHO05D006427 3.1e-77 292.0 169 82.8
Gohir.D13G161900 Gossypium hirsutum HOM05D005087 ORTHO05D006427 3.1e-77 292.0 170 82.9
Gorai.013G183900 Gossypium raimondii HOM05D005087 ORTHO05D006427 3.1e-77 292.0 170 82.9
SGA_v2.0_scaffold119G32758 Striga asiatica HOM05D005087 ORTHO05D006427 3.1e-77 292.0 169 84.0
CDE09G1121 Ceratophyllum demersum HOM05D005087 ORTHO05D006427 4.1e-77 291.6 167 85.0
Manes.10G136400 Manihot esculenta HOM05D005087 ORTHO05D006427 4.1e-77 291.6 169 84.0
EL10Ac2g04365 Beta vulgaris HOM05D005087 ORTHO05D006427 6.9e-77 290.8 169 83.4
Duzib177G0717 Durio zibethinus HOM05D005087 ORTHO05D006427 6.9e-77 290.8 166 83.7
Hma1.2p1_0685F.1_g203150 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 6.9e-77 290.8 168 83.9
Potri.001G262600 Populus trichocarpa HOM05D005087 ORTHO05D006427 6.9e-77 290.8 169 84.0
Sopen01g034670 Solanum pennellii HOM05D005087 ORTHO05D006427 1.2e-76 290.0 166 83.7
Gohir.A13G157100 Gossypium hirsutum HOM05D005087 ORTHO05D006427 1.5e-76 289.7 170 82.4
Rhsim01G0127000 Rhododendron simsii HOM05D005087 ORTHO05D006427 2.0e-76 289.3 173 82.1
Aqoxy1G00327 Aquilegia oxysepala HOM05D005087 ORTHO05D006427 2.6e-76 288.9 166 83.1
Solyc01g087720.4 Solanum lycopersicum HOM05D005087 ORTHO05D006427 2.6e-76 288.9 166 83.1
Thecc.05G218700 Theobroma cacao HOM05D005087 ORTHO05D006427 2.6e-76 288.9 169 82.2
Nn7g36293 Nelumbo nucifera HOM05D005087 ORTHO05D006427 3.4e-76 288.5 169 82.2
Medtr3g033470 Medicago truncatula HOM05D005087 ORTHO05D006427 4.5e-76 288.1 171 80.1
Ca_14518_v3 Cicer arietinum L. HOM05D005087 ORTHO05D006427 5.9e-76 287.7 171 80.7
HanXRQChr01g0007751 Helianthus annuus HOM05D005087 ORTHO05D006427 5.9e-76 287.7 169 82.8
MSTRG.17010 Avicennia marina HOM05D005087 ORTHO05D006427 1.0e-75 287.0 169 82.2
Glyma.20G198300 Glycine max HOM05D005087 ORTHO05D006427 1.0e-75 287.0 169 81.7
Hund09863 Selenicereus undatus HOM05D005087 ORTHO05D006427 1.0e-75 287.0 169 82.8
Migut.B01270 Erythranthe guttata HOM05D005087 ORTHO05D006427 1.3e-75 286.6 169 81.1
TWI09G0473 Tripterygium wilfordii HOM05D005087 ORTHO05D006427 1.3e-75 286.6 170 84.7
Atru.chr11.2578 Acer truncatum HOM05D005087 ORTHO05D006427 1.7e-75 286.2 168 82.1
ECA248G2604 Erigeron canadensis HOM05D005087 ORTHO05D006427 2.2e-75 285.8 169 82.2
VMungo0251G2588 Vigna mungo HOM05D005087 ORTHO05D006427 5.0e-75 284.6 171 79.5
BcaB01g05014 Brassica carinata HOM05D005087 ORTHO05D006427 6.5e-75 284.3 164 84.1
Eucgr.G03334 Eucalyptus grandis HOM05D005087 ORTHO05D006427 6.5e-75 284.3 170 80.6
Lalb_Chr04g0263871 Lupinus albus HOM05D005087 ORTHO05D006427 6.5e-75 284.3 169 81.1
Os05g0596600 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 6.5e-75 284.3 168 82.7
Carub.0006s1411 Capsella rubella HOM05D005087 ORTHO05D006427 8.5e-75 283.9 164 84.1
Medtr5g036330 Medicago truncatula HOM05D005087 ORTHO05D006427 1.1e-74 283.5 169 79.9
A03p07470 Brassica napus HOM05D005087 ORTHO05D006427 1.4e-74 283.1 164 83.5
C03p08670 Brassica napus HOM05D005087 ORTHO05D006427 1.4e-74 283.1 164 83.5
BolC3t13367H Brassica oleracea HOM05D005087 ORTHO05D006427 1.4e-74 283.1 164 83.5
BraA03t10076Z Brassica rapa HOM05D005087 ORTHO05D006427 1.4e-74 283.1 164 83.5
Thhalv10012535m.g Eutrema salsugineum HOM05D005087 ORTHO05D006427 1.4e-74 283.1 164 83.5
AL6G26800 Arabidopsis lyrata HOM05D005087 ORTHO05D006427 1.9e-74 282.7 164 83.5
Psat6g018320 Pisum sativum HOM05D005087 ORTHO05D006427 1.9e-74 282.7 169 79.9
Sp6g28190 Schrenkiella parvula HOM05D005087 ORTHO05D006427 1.9e-74 282.7 164 83.5
ClCG09G004390 Citrullus lanatus HOM05D005087 ORTHO05D006427 3.2e-74 282.0 161 84.5
Phvul.002G285500 Phaseolus vulgaris HOM05D005087 ORTHO05D006427 4.2e-74 281.6 168 80.4
CARHR197390 Cardamine hirsuta HOM05D005087 ORTHO05D006427 5.5e-74 281.2 164 82.9
Medtr4g115050 Medicago truncatula HOM05D005087 ORTHO05D006427 5.5e-74 281.2 165 81.2
Medtr5g036370 Medicago truncatula HOM05D005087 ORTHO05D006427 5.5e-74 281.2 169 80.5
PGR031G1517 Punica granatum HOM05D005087 ORTHO05D006427 5.5e-74 281.2 167 82.6
Cc02_g28540 Coffea canephora HOM05D005087 ORTHO05D006427 9.4e-74 280.4 168 80.4
SalBow5G0870 Salvia bowleyana HOM05D005087 ORTHO05D006427 9.4e-74 280.4 163 82.8
SalBow5G2001 Salvia bowleyana HOM05D005087 ORTHO05D006427 9.4e-74 280.4 163 82.8
TPR.G14572 Trifolium pratense HOM05D005087 ORTHO05D006427 9.4e-74 280.4 169 78.7
Lj3g0013327 Lotus japonicus HOM05D005087 ORTHO05D006427 1.6e-73 279.6 163 82.2
THA.LOC104819098 Tarenaya hassleriana HOM05D005087 ORTHO05D006427 1.6e-73 279.6 166 81.9
SEGI_29436 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 2.1e-73 279.3 164 82.3
AT5G15920 Arabidopsis thaliana HOM05D005087 ORTHO05D006427 7.9e-73 277.3 163 82.8
CANSAT80G0443 Cannabis sativa HOM05D005087 ORTHO05D006427 7.9e-73 277.3 169 78.7
Lj3g0015731 Lotus japonicus HOM05D005087 ORTHO05D006427 3.0e-72 275.4 165 80.6
SEGI_04619 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 3.0e-72 275.4 163 81.0
Dinv09311 Davidia involucrata HOM05D005087 ORTHO05D006427 4.8e-70 268.1 154 86.4
MD07G1021900 Malus domestica HOM05D005087 ORTHO05D006427 4.1e-69 265.0 169 78.7
DCAR_029700 Daucus carota HOM05D005087 ORTHO05D006427 4.5e-68 261.5 154 81.2
Pp3c24_4940 Physcomitrium patens HOM05D005087 ORTHO05D006427 4.5e-68 261.5 163 76.7
Aa31LG11G13680 Aethionema arabicum HOM05D005087 ORTHO05D006427 2.9e-67 258.8 189 70.4
SMO143G0265 Selaginella moellendorffii HOM05D005087 ORTHO05D006427 3.8e-67 258.5 159 78.6
Lsat_1_v5_gn_1_103161 Lactuca sativa HOM05D005087 ORTHO05D006427 2.5e-66 255.8 148 84.5
Oeu049480.1 Olea europaea HOM05D005087 ORTHO05D006427 7.2e-66 254.2 233 58.4
Mapoly0007s0066 Marchantia polymorpha HOM05D005087 ORTHO05D006427 9.7e-63 243.8 151 78.1
CBR_g88572 Chara braunii HOM05D005087 ORTHO05D000002 1.3e-59 233.4 151 74.2
arahy.Tifrunner.gnm1.ann1.JJ1LEU Arachis hypogaea HOM05D005087 ORTHO05D006427 3.8e-59 231.9 149 79.2
arahy.Tifrunner.gnm1.ann1.1A5L99 Arachis hypogaea HOM05D005087 ORTHO05D006427 6.5e-59 231.1 139 82.7
Lju99A9T21 Lonicera japonica HOM05D005087 ORTHO05D006427 8.3e-54 214.2 154 73.4
SHI04084 Sapria himalayana HOM05D005087 ORTHO05D006427 1.4e-53 213.4 147 74.8
AUR62023092 Chenopodium quinoa HOM05D005087 ORTHO05D006427 1.6e-52 209.9 118 89.8
AUR62009415 Chenopodium quinoa HOM05D005087 ORTHO05D006427 1.7e-51 206.5 117 88.9
Nitab4.5_0002388g0090 Nicotiana tabacum HOM05D005087 ORTHO05D006427 5.7e-47 191.4 107 86.0
SGA_v2.0_scaffold42G16189 Striga asiatica HOM05D005087 ORTHO05D006427 4.9e-46 188.3 170 59.4
Cre10.g440200 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 5.9e-44 181.4 145 62.1
MCO04G035 Micromonas commoda HOM05D005087 ORTHO05D006427 6.1e-41 171.4 152 55.3
Sabra16G0161000 Salix brachista HOM05D005087 ORTHO05D006427 8.9e-40 167.5 95 86.3
Nitab4.5_0000707g0060 Nicotiana tabacum HOM05D005087 ORTHO05D006427 3.4e-39 165.6 94 80.9
PRCOL_00002930 Prasinoderma coloniale HOM05D005087 ORTHO05D006427 5.7e-39 164.9 155 53.5
ATR0626G229 Amborella trichopoda HOM05D005087 ORTHO05D006427 4.9e-38 161.8 169 54.4
Medtr5g036300 Medicago truncatula HOM05D005087 ORTHO05D006427 2.2e-30 136.3 123 62.6
Cre10.g440300 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 6.4e-30 134.8 134 49.3
Sc10g0000340 Simmondsia chinensis HOM05D005087 ORTHO05D006427 2.9e-22 109.4 64 82.8
Cfa027028 Carpinus fangiana HOM05D005087 ORTHO05D006427 5.4e-21 105.1 164 38.4
FAN01G1492 Fragaria x ananassa HOM05D005087 ORTHO05D006427 5.8e-15 85.1 51 70.6
Nitab4.5_0000707g0070 Nicotiana tabacum HOM05D005087 ORTHO05D006427 9.9e-15 84.3 47 85.1
Nitab4.5_0002388g0080 Nicotiana tabacum HOM05D005087 ORTHO05D006427 2.2e-14 83.2 48 83.3
vmacro17464 Vaccinium macrocarpon HOM05D005087 ORTHO05D006427 4.3e-10 68.9 48 68.8
TPR.G19974 Trifolium pratense HOM05D005087 ORTHO05D006427 5.8e-07 58.5 125 31.2
Psat7g002800 Pisum sativum HOM05D005087 ORTHO05D006427 7.6e-07 58.2 85 43.5
QL09p005323 Quercus lobata HOM05D004178 ORTHO05D005204 6.4e-06 55.1 138 26.8


User provided reference genes

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