Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G5527 Papaver somniferum HOM05D066660 ORTHO05D004692 4.2e-254 880.9 464 100.0
PSO384G5141 Papaver somniferum HOM05D066660 ORTHO05D004692 8.1e-250 866.7 464 98.5
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 1.7e-13 81.6 141 36.2
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 2.2e-13 81.3 212 32.1
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 2.2e-13 81.3 127 37.0
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 3.2e-12 77.4 260 27.7
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 4.2e-12 77.0 218 30.3
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 1.6e-11 75.1 130 35.4
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 3.5e-11 73.9 339 26.0
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 4.6e-11 73.6 93 43.0
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 1.8e-10 71.6 141 34.8
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 3.0e-10 70.9 116 35.3
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 3.9e-10 70.5 115 33.9
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 3.9e-10 70.5 84 42.9
PSO339G5001 Papaver somniferum HOM05D066734 ORTHO05D004692 3.9e-10 70.5 80 47.5
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 3.9e-10 70.5 229 27.9
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 6.7e-10 69.7 141 31.9
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 6.7e-10 69.7 183 30.6
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 6.7e-10 69.7 232 28.0
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 6.7e-10 69.7 255 29.8
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 6.7e-10 69.7 110 35.5
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 8.7e-10 69.3 112 35.7
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 8.7e-10 69.3 90 42.2
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 8.7e-10 69.3 58 50.0
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.1e-09 68.9 53 54.7
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 1.1e-09 68.9 307 23.1
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 1.5e-09 68.6 88 38.6
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 1.9e-09 68.2 58 48.3
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 1.9e-09 68.2 134 38.1
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 2.5e-09 67.8 108 35.2
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 3.3e-09 67.4 55 49.1
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 3.3e-09 67.4 115 33.9
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 4.3e-09 67.0 116 37.9
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 4.3e-09 67.0 87 40.2
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 5.6e-09 66.6 53 52.8
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 5.6e-09 66.6 208 28.8
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 5.6e-09 66.6 57 49.1
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 5.6e-09 66.6 265 24.5
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 7.4e-09 66.2 53 50.9
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 7.4e-09 66.2 88 40.9
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 7.4e-09 66.2 152 36.8
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 7.4e-09 66.2 107 38.3
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 7.4e-09 66.2 94 39.4
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 7.4e-09 66.2 87 40.2
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 7.4e-09 66.2 139 32.4
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 7.4e-09 66.2 139 32.4
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 7.4e-09 66.2 249 26.1
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 9.6e-09 65.9 71 42.3
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 9.6e-09 65.9 86 43.0
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 9.6e-09 65.9 158 33.5
TWI31G1174 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 9.6e-09 65.9 88 38.6
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 9.6e-09 65.9 134 31.3
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 1.3e-08 65.5 58 48.3
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 1.6e-08 65.1 108 34.3
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 1.6e-08 65.1 137 35.8
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 1.6e-08 65.1 137 35.8
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.6e-08 65.1 99 38.4
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.6e-08 65.1 99 38.4
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 1.6e-08 65.1 141 29.8
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.6e-08 65.1 167 29.9
unitig_8.g3659 Utricularia gibba HOM05D004190 ORTHO05D004692 1.6e-08 65.1 85 41.2
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 2.1e-08 64.7 115 34.8
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 2.1e-08 64.7 95 37.9
Aqoxy1G03565 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 2.8e-08 64.3 158 31.6
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 2.8e-08 64.3 124 33.9
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 2.8e-08 64.3 158 31.0
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 3.7e-08 63.9 129 34.1
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 3.7e-08 63.9 127 34.6
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 3.7e-08 63.9 187 27.3
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 4.8e-08 63.5 85 34.1
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 4.8e-08 63.5 51 51.0
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 4.8e-08 63.5 140 31.4
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 4.8e-08 63.5 161 33.5
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 6.2e-08 63.2 151 31.1
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 6.2e-08 63.2 94 36.2
HanXRQChr13g0419771 Helianthus annuus HOM05D004190 ORTHO05D004692 6.2e-08 63.2 118 35.6
SalBow3G0001 Salvia bowleyana HOM05D004190 ORTHO05D004692 6.2e-08 63.2 85 41.2
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 6.2e-08 63.2 132 35.6
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 8.2e-08 62.8 113 36.3
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 8.2e-08 62.8 94 37.2
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 8.2e-08 62.8 130 34.6
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 8.2e-08 62.8 90 36.7
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 1.1e-07 62.4 91 36.3
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 1.1e-07 62.4 150 30.7
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.1e-07 62.4 113 37.2
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 1.4e-07 62.0 107 36.4
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 1.4e-07 62.0 130 31.5
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 1.4e-07 62.0 106 37.7
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.4e-07 62.0 131 33.6
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.4e-07 62.0 131 33.6
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 1.4e-07 62.0 157 29.9
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.4e-07 62.0 86 38.4
CDE06G0068 Ceratophyllum demersum HOM05D003520 ORTHO05D003332 1.8e-07 61.6 50 54.0
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 1.8e-07 61.6 56 44.6
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 2.4e-07 61.2 131 33.6
ECA240G3776 Erigeron canadensis HOM05D004190 ORTHO05D000203 2.4e-07 61.2 57 45.6
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.4e-07 61.2 112 34.8
Gorai.001G110900 Gossypium raimondii HOM05D004190 ORTHO05D004692 2.4e-07 61.2 70 42.9
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 2.4e-07 61.2 299 25.8
Sopen08g029000 Solanum pennellii HOM05D003520 ORTHO05D003332 2.4e-07 61.2 272 26.8
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 2.4e-07 61.2 55 45.5
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 3.1e-07 60.8 76 42.1
Manes.01G173566 Manihot esculenta HOM05D065945 ORTHO05D004692 3.1e-07 60.8 49 53.1
SGA_v2.0_scaffold295G47507 Striga asiatica HOM05D004190 ORTHO05D004692 3.1e-07 60.8 89 37.1
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 4.0e-07 60.5 119 35.3
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 5.3e-07 60.1 216 24.5
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 5.3e-07 60.1 104 33.7
PSO384G2347 Papaver somniferum HOM05D066734 ORTHO05D004692 5.3e-07 60.1 144 34.0
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 5.3e-07 60.1 79 39.2
PGSC0003DMG400006228 Solanum tuberosum HOM05D004190 ORTHO05D004692 5.3e-07 60.1 58 41.4
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 6.9e-07 59.7 129 32.6
Gohir.D07G103000 Gossypium hirsutum HOM05D004190 ORTHO05D004692 6.9e-07 59.7 70 41.4
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 6.9e-07 59.7 285 25.3
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 6.9e-07 59.7 97 34.0
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 9.0e-07 59.3 110 34.5
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 9.0e-07 59.3 96 39.6
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 9.0e-07 59.3 65 41.5
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 9.0e-07 59.3 269 23.0
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 9.0e-07 59.3 135 33.3
Sopen00g012630 Solanum pennellii HOM05D004190 ORTHO05D004692 9.0e-07 59.3 54 42.6
Sopen01g043570 Solanum pennellii HOM05D004190 ORTHO05D004692 9.0e-07 59.3 54 42.6
Ah.02g116500 Amaranthus hybridus HOM05D003520 ORTHO05D003332 1.2e-06 58.9 50 50.0
Migut.N02470 Erythranthe guttata HOM05D004190 ORTHO05D004692 1.2e-06 58.9 178 25.3
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 1.2e-06 58.9 253 26.1
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 1.2e-06 58.9 78 39.7
BcaB05g23553 Brassica carinata HOM05D004190 ORTHO05D004692 1.5e-06 58.5 51 47.1
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 1.5e-06 58.5 114 34.2
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 2.0e-06 58.2 309 27.2
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 2.0e-06 58.2 47 53.2
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 2.0e-06 58.2 57 45.6
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 2.6e-06 57.8 88 39.8
arahy.Tifrunner.gnm1.ann1.RT2UP8 Arachis hypogaea HOM05D003520 ORTHO05D003332 2.6e-06 57.8 73 38.4
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 2.6e-06 57.8 116 35.3
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 2.6e-06 57.8 116 35.3
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea HOM05D003520 ORTHO05D003332 3.4e-06 57.4 95 37.9
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 3.4e-06 57.4 215 27.9
HanXRQChr03g0089211 Helianthus annuus HOM05D004190 ORTHO05D004692 3.4e-06 57.4 156 28.2
Peaxi162Scf00714g00124 Petunia axillaris HOM05D003520 ORTHO05D003332 3.4e-06 57.4 116 36.2
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 3.4e-06 57.4 112 30.4
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 3.4e-06 57.4 264 25.0
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 4.5e-06 57.0 62 43.5
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 4.5e-06 57.0 112 36.6
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 4.5e-06 57.0 127 32.3
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 4.5e-06 57.0 123 30.9
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 4.5e-06 57.0 120 31.7
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 5.8e-06 56.6 115 31.3
Ah.12g057370 Amaranthus hybridus HOM05D003520 ORTHO05D003332 5.8e-06 56.6 73 43.8
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 5.8e-06 56.6 82 35.4
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 5.8e-06 56.6 80 37.5
TWI60G1121 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 5.8e-06 56.6 67 38.8
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 5.8e-06 56.6 46 52.2
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 7.6e-06 56.2 90 37.8
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 7.6e-06 56.2 151 28.5
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 1.0e-05 55.8 88 33.0
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 1.0e-05 55.8 88 33.0
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 1.0e-05 55.8 88 33.0
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 1.0e-05 55.8 88 33.0
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 1.0e-05 55.8 55 43.6
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 1.0e-05 55.8 67 41.8
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 1.0e-05 55.8 78 38.5
Solyc10g049990.1 Solanum lycopersicum HOM05D004190 ORTHO05D018124 1.0e-05 55.8 59 47.5


User provided reference genes

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