Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 0.0e+00 1597.8 813 100.0
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 0.0e+00 1455.7 817 90.6
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 0.0e+00 1107.8 825 68.2
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 1.0e-300 1036.6 816 65.3
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 2.0e-299 1032.3 821 64.4
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 5.3e-297 1024.2 818 64.5
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 2.6e-296 1021.9 842 64.1
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 4.5e-296 1021.1 819 63.2
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 2.1e-293 1012.3 822 62.0
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 3.6e-293 1011.5 814 62.7
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 1.0e-292 1010.0 824 61.8
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 1.5e-291 1006.1 822 61.8
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 2.6e-291 1005.4 814 62.2
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 3.7e-290 1001.5 813 61.9
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 3.1e-289 998.4 819 62.0
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 7.0e-289 997.3 819 62.9
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 1.5e-286 989.6 818 62.3
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 1.0e-284 983.4 818 60.9
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 1.0e-284 983.4 822 61.6
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 9.8e-283 976.9 811 61.0
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 3.7e-282 974.9 821 62.9
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 5.4e-281 971.1 817 61.2
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 9.1e-281 970.3 815 61.7
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 4.5e-280 968.0 749 66.1
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 2.9e-279 965.3 816 61.3
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 3.8e-279 964.9 813 61.4
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 6.5e-279 964.1 842 59.4
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 3.3e-278 961.8 818 60.6
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.2e-277 959.9 812 60.7
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 8.0e-277 957.2 813 60.8
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.4e-276 956.4 813 60.5
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 1.8e-276 956.1 825 59.4
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 7.5e-275 950.7 812 60.1
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 1.7e-274 949.5 823 58.9
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 6.3e-274 947.6 789 60.5
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 1.2e-272 943.3 828 59.3
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 7.8e-272 940.6 829 58.0
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.0e-271 940.3 818 59.8
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 3.8e-271 938.3 836 59.1
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 3.0e-268 928.7 813 57.9
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 4.0e-268 928.3 827 57.6
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 6.8e-268 927.5 807 57.4
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 6.8e-268 927.5 802 58.5
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 2.0e-267 926.0 831 58.0
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 4.4e-267 924.9 819 59.1
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 1.3e-266 923.3 830 58.1
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 3.5e-264 915.2 793 59.9
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 3.0e-263 912.1 793 60.0
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 3.0e-263 912.1 817 59.2
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 3.9e-263 911.8 807 57.4
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 2.5e-262 909.1 813 57.7
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 4.3e-262 908.3 813 58.4
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 6.2e-261 904.4 794 58.8
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 1.8e-260 902.9 790 59.4
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 1.8e-260 902.9 795 59.0
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 8.9e-260 900.6 813 58.4
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 3.4e-259 898.7 830 57.3
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 5.8e-259 897.9 820 56.2
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 9.8e-259 897.1 818 57.6
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 9.8e-259 897.1 822 56.8
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 2.9e-258 895.6 887 54.6
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 4.9e-258 894.8 795 58.4
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 9.2e-257 890.6 736 61.7
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 2.7e-256 889.0 791 59.2
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 1.5e-254 883.2 831 55.8
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 4.3e-254 881.7 796 57.9
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 2.8e-253 879.0 800 58.0
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 8.1e-253 877.5 819 55.4
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 2.6e-251 872.5 755 57.6
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 1.3e-250 870.2 818 55.4
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 2.2e-250 869.4 818 55.4
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 2.4e-249 865.9 818 54.9
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 1.0e-247 860.5 821 55.2
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 1.7e-247 859.8 823 57.5
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 1.1e-246 857.1 819 54.8
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 4.3e-246 855.1 857 53.9
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 5.6e-246 854.7 822 54.3
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 2.1e-245 852.8 817 53.7
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 1.8e-244 849.7 845 53.6
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 2.2e-242 842.8 824 54.2
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 2.4e-241 839.3 821 53.2
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 1.0e-239 833.9 817 53.4
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 3.2e-233 812.4 925 48.8
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 1.2e-232 810.4 824 54.0
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 2.5e-230 802.7 816 51.7
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 1.1e-225 787.3 614 64.2
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 8.7e-223 777.7 711 55.1
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.1e-221 773.1 620 63.7
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.1e-221 773.1 620 63.7
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.4e-217 760.4 591 64.1
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.9e-214 750.0 623 62.0
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 1.2e-211 740.7 720 54.0
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 4.2e-209 732.3 763 52.0
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 9.0e-204 714.5 621 59.6
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 6.1e-200 701.8 622 57.7
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 6.5e-194 681.8 766 47.1
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 8.2e-189 664.8 797 46.3
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 1.1e-182 644.4 828 42.8
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 1.5e-182 644.0 721 47.9
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 9.8e-158 561.6 547 55.0
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.6e-150 537.0 482 57.1
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 7.5e-150 535.4 405 66.2
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 1.3e-149 534.6 550 51.5
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 1.4e-148 531.2 472 55.3
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 4.6e-131 473.0 780 37.7
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 3.0e-130 470.3 397 60.2
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 1.4e-124 451.4 774 39.1
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 3.3e-121 440.3 745 38.7
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.7e-117 427.9 395 55.7
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 7.8e-115 419.1 338 61.8
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.8e-111 407.9 344 59.3
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.8e-111 407.9 341 59.8
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.2e-93 347.8 459 43.8
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 1.2e-86 325.5 480 41.9
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 9.4e-84 315.8 277 58.8
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 2.3e-74 284.6 860 28.6
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.1e-73 282.3 380 44.7
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 2.4e-71 274.6 234 60.3
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 7.7e-70 269.6 297 51.5
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 5.0e-69 266.9 303 47.9
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 7.2e-68 263.1 183 64.5
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 6.1e-67 260.0 371 41.8
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 5.9e-54 216.9 228 50.4
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.0e-50 204.5 144 65.3
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.7e-46 191.4 197 50.8
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 4.7e-43 180.6 175 54.3
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 9.2e-39 166.4 166 53.0
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 1.2e-38 166.0 237 43.5
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 5.0e-37 160.6 166 51.8
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.0e-34 152.9 161 55.3
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.4e-34 152.5 216 41.7
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 4.0e-34 151.0 222 41.0
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.6e-28 130.6 171 46.2
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 4.9e-16 90.9 143 41.3
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 4.9e-16 90.9 752 21.7
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 8.6e-13 80.1 109 37.6
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 9.9e-09 66.6 44 65.9
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 6.4e-08 63.9 73 46.6
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 1.2e-06 59.7 428 22.4
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 6.0e-06 57.4 67 47.8


User provided reference genes

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