Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1478.8 744 100.0
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1461.8 744 98.5
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1312.7 739 87.8
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1306.6 738 87.5
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1305.8 739 87.3
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1305.4 744 87.2
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1305.0 744 86.7
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1303.9 744 87.1
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1303.9 744 87.4
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1301.2 739 87.0
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1300.4 742 87.1
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1300.4 744 87.1
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1300.4 744 86.3
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1297.0 744 86.4
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1297.0 745 87.0
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1296.6 744 86.7
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1296.6 745 87.0
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1296.6 744 86.3
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1296.2 745 86.4
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1294.6 744 86.4
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1294.3 744 85.3
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1294.3 744 87.0
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1293.9 744 86.7
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1293.1 744 85.6
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1293.1 744 86.0
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1293.1 744 86.7
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1291.9 744 86.0
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1289.6 744 86.0
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1289.6 744 85.8
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1288.5 743 85.7
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1288.5 744 85.5
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1288.5 744 85.9
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1288.5 744 85.6
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1288.1 744 85.8
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1287.7 738 87.0
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1287.3 771 84.0
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1286.9 744 85.6
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1286.6 743 85.6
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1285.8 744 85.6
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1285.4 744 86.6
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1284.2 750 85.3
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1283.9 744 85.8
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1283.5 744 85.3
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1283.5 744 85.6
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1283.1 744 85.6
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1283.1 744 85.3
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1282.3 745 85.2
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1282.3 744 85.6
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1282.3 744 85.2
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1281.9 745 85.6
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1281.9 744 85.1
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1280.8 744 85.2
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1280.8 744 84.8
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1278.8 746 85.4
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1278.1 744 85.3
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1276.5 744 85.5
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1276.2 744 85.2
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1275.8 746 85.3
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1274.6 744 84.3
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1273.1 739 85.0
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1272.7 745 85.2
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1272.3 744 85.5
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1271.1 766 83.4
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1271.1 766 83.4
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1271.1 744 84.4
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1270.4 744 84.3
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1269.6 743 84.3
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1269.2 745 84.2
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1268.8 744 83.2
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1268.4 744 84.1
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1267.3 747 84.5
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1266.5 745 84.7
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1264.2 748 83.6
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1263.4 743 83.7
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1262.7 745 84.2
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1262.7 742 83.8
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1262.3 744 84.4
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1260.7 743 84.7
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1260.4 747 84.2
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1260.4 745 83.4
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1260.4 743 83.7
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1260.0 745 83.8
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1259.2 744 83.3
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1258.8 744 84.8
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1258.0 749 83.8
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1258.0 744 84.0
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1257.3 744 83.6
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1256.9 743 83.6
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1253.0 743 83.2
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1251.1 743 82.8
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1250.3 745 83.6
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1249.2 747 82.3
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1248.8 744 82.7
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1247.6 714 87.5
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1247.3 743 82.6
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1246.5 743 82.9
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1246.1 743 82.8
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1245.3 743 82.8
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1245.0 743 82.4
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1245.0 743 82.5
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1244.2 710 86.6
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1242.3 808 78.5
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1241.9 740 83.2
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1241.5 825 77.9
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1239.9 760 81.3
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1238.4 743 83.0
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1227.2 723 84.1
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1224.5 710 84.9
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1224.2 745 82.0
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1220.3 713 85.8
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1219.1 742 81.7
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1216.8 776 79.5
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1210.3 749 81.6
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1202.6 739 82.7
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1198.7 744 81.0
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1195.6 747 79.3
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1186.8 668 86.7
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1171.4 676 86.1
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1162.5 749 78.9
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1125.2 616 89.1
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1119.4 740 75.7
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 0.0e+00 1113.2 631 86.4
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 0.0e+00 1111.3 687 79.8
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1098.2 745 73.7
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1090.9 737 73.8
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 1.3e-310 1069.3 709 74.9
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 1.1e-296 1023.1 639 79.7
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 4.1e-243 845.1 667 63.4
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 5.5e-232 808.1 700 59.9
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 3.0e-222 775.8 540 75.0
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 4.2e-216 755.4 644 60.9
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 7.7e-210 734.6 523 73.0
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 4.8e-204 715.3 453 79.5
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 7.7e-202 708.0 744 54.4
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 6.6e-201 704.9 742 54.3
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 6.3e-196 688.3 467 75.2
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 1.3e-132 478.0 263 88.2
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 3.0e-129 466.8 433 58.9
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 3.6e-90 337.0 221 78.7
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 4.3e-83 313.5 578 37.0
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 2.5e-75 287.7 152 90.8
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 2.4e-70 271.2 143 91.6
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 4.0e-57 227.3 170 70.0
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 5.8e-40 170.2 273 39.2
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 2.4e-38 164.9 84 91.7
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 5.6e-35 153.7 80 91.2
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 3.6e-34 151.0 98 73.5
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 5.1e-28 130.6 72 86.1
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 2.1e-26 125.2 80 75.0
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 5.3e-25 120.6 71 80.3
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 1.1e-22 112.8 69 73.9
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 1.3e-20 105.9 70 74.3
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 2.5e-19 101.7 108 52.8
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 4.8e-18 97.4 75 68.0
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 1.4e-17 95.9 73 68.5
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 4.1e-17 94.4 75 65.3
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 4.1e-17 94.4 85 55.3
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 1.2e-16 92.8 222 32.9
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 1.7e-15 89.0 85 52.9
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 1.4e-14 85.9 47 87.2
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 2.7e-13 81.6 71 67.6
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 6.1e-13 80.5 72 56.9
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 5.7e-11 73.9 47 74.5
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.6e-10 72.4 46 73.9
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 2.2e-10 72.0 45 75.6
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 1.4e-09 69.3 43 69.8
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 5.3e-09 67.4 40 80.0
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 2.0e-08 65.5 72 51.4
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 2.9e-07 61.6 51 51.0
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 1.4e-06 59.3 33 81.8
CAN.G970.17 Capsicum annuum HOM05D004298 ORTHO05D115446 9.4e-06 56.6 50 62.0


User provided reference genes

Program Settings