Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 1.1e-159 566.6 295 100.0
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 5.0e-136 488.0 296 85.5
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 3.2e-135 485.3 300 85.0
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 8.8e-133 477.2 296 83.4
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 9.7e-132 473.8 300 82.3
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 2.8e-131 472.2 296 83.8
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 1.4e-130 469.9 300 81.3
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 1.4e-130 469.9 300 81.3
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 2.4e-130 469.2 302 82.5
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 2.4e-130 469.2 297 82.2
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 3.1e-130 468.8 300 81.3
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 1.3e-128 463.4 302 79.8
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 2.9e-128 462.2 293 80.9
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 2.9e-128 462.2 297 80.5
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 5.0e-128 461.5 302 80.1
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.5e-127 459.9 297 80.5
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 1.5e-127 459.9 298 80.2
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 1.5e-127 459.9 296 81.1
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 1.5e-127 459.9 301 77.7
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 1.9e-127 459.5 304 79.3
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 1.9e-127 459.5 300 80.0
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 3.2e-127 458.8 304 78.9
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 3.2e-127 458.8 304 78.9
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 4.2e-127 458.4 298 80.2
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 4.2e-127 458.4 298 79.9
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 5.5e-127 458.0 304 78.9
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 5.5e-127 458.0 304 78.9
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 1.2e-126 456.8 301 77.7
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 1.6e-126 456.4 301 77.1
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 2.7e-126 455.7 296 81.1
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 3.6e-126 455.3 304 78.3
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 4.7e-126 454.9 305 77.7
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 8.0e-126 454.1 304 78.6
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 1.0e-125 453.8 302 78.8
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 1.0e-125 453.8 305 78.0
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 1.4e-125 453.4 301 77.4
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 3.0e-125 452.2 300 77.7
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 6.8e-125 451.1 304 78.0
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 6.8e-125 451.1 300 78.7
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 8.8e-125 450.7 301 78.7
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 1.2e-124 450.3 306 78.1
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 1.5e-124 449.9 304 77.3
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 2.0e-124 449.5 304 80.6
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.0e-124 449.5 302 78.1
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 2.0e-124 449.5 302 78.1
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.0e-124 449.5 299 79.3
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 2.0e-124 449.5 302 78.1
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 4.4e-124 448.4 302 76.8
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 4.4e-124 448.4 300 78.3
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 9.8e-124 447.2 296 79.1
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 1.7e-123 446.4 302 78.5
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 1.7e-123 446.4 302 79.1
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.2e-123 446.0 302 77.8
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 2.2e-123 446.0 299 76.9
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 3.7e-123 445.3 304 76.0
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 3.7e-123 445.3 296 79.1
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 8.3e-123 444.1 301 76.7
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 8.3e-123 444.1 299 78.6
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 8.3e-123 444.1 303 76.2
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 1.4e-122 443.4 303 76.6
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 1.8e-122 443.0 301 78.1
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 3.1e-122 442.2 305 76.7
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 4.1e-122 441.8 300 76.7
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 4.1e-122 441.8 300 76.3
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 9.1e-122 440.7 297 77.4
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 9.1e-122 440.7 302 76.8
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 1.6e-121 439.9 304 77.3
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 1.6e-121 439.9 295 77.6
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 2.0e-121 439.5 282 81.9
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 3.5e-121 438.7 306 75.5
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.3e-120 436.8 304 75.0
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 1.3e-120 436.8 303 75.2
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 1.7e-120 436.4 303 75.9
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.7e-120 436.4 303 75.9
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 2.3e-120 436.0 302 75.8
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 2.9e-120 435.6 301 75.7
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 2.9e-120 435.6 304 74.7
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 2.9e-120 435.6 304 75.0
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 3.8e-120 435.3 295 76.3
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 8.6e-120 434.1 293 76.5
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 1.9e-119 433.0 299 74.9
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.9e-119 433.0 303 75.6
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 3.3e-119 432.2 306 73.5
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 3.3e-119 432.2 306 73.5
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 3.3e-119 432.2 306 73.5
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 3.3e-119 432.2 303 73.6
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 3.3e-119 432.2 295 76.6
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 9.5e-119 430.6 302 74.8
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 1.6e-118 429.9 301 73.8
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 1.6e-118 429.9 303 73.9
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 4.7e-118 428.3 301 75.1
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 2.8e-115 419.1 305 73.1
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 2.8e-115 419.1 299 72.6
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 1.6e-113 413.3 301 71.4
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 2.7e-113 412.5 300 72.3
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 1.0e-112 410.6 298 71.1
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.0e-112 410.6 302 72.2
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 1.3e-112 410.2 303 71.6
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 2.9e-112 409.1 298 70.8
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 5.0e-112 408.3 301 71.4
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 8.6e-112 407.5 295 70.8
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 2.5e-111 406.0 301 70.8
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 4.3e-111 405.2 296 70.9
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 7.3e-111 404.4 292 73.6
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 2.1e-110 402.9 297 70.4
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 2.1e-110 402.9 297 70.4
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 2.1e-110 402.9 297 70.4
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 2.1e-110 402.9 299 70.9
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 2.1e-110 402.9 302 71.2
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 2.6e-108 396.0 303 70.0
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 1.0e-104 384.0 292 70.2
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 3.9e-104 382.1 312 65.1
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 3.6e-102 375.6 280 72.9
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 4.9e-99 365.2 298 66.1
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 7.8e-97 357.8 301 65.4
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 1.0e-96 357.5 284 70.4
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 1.2e-92 344.0 323 59.4
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 8.3e-91 337.8 301 59.5
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 2.8e-86 322.8 195 78.5
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.5e-79 300.4 245 65.3
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 6.2e-78 295.0 299 54.8
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 4.4e-76 288.9 295 59.3
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 9.9e-76 287.7 245 62.9
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 2.2e-75 286.6 291 55.0
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 2.9e-75 286.2 296 56.1
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 4.9e-67 258.8 134 92.5
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 6.0e-65 251.9 194 72.7
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 7.9e-65 251.5 292 49.3
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.9e-58 230.3 271 50.9
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 1.6e-54 217.2 222 55.9
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 1.0e-51 208.0 204 56.9
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 1.3e-48 197.6 306 43.1
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 3.9e-48 196.1 190 60.0
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 6.7e-48 195.3 287 44.6
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.1e-45 188.0 164 64.6
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.1e-42 177.9 189 55.0
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 1.4e-42 177.6 226 50.9
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 1.4e-40 171.0 197 48.2
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 8.2e-38 161.8 110 76.4
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 1.0e-35 154.8 104 70.2
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 6.7e-32 142.1 180 46.7
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 2.8e-30 136.7 105 63.8
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 4.1e-29 132.9 218 43.1
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 1.7e-22 110.9 80 67.5
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 4.8e-22 109.4 86 65.1
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 5.9e-20 102.4 140 52.9
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 3.8e-19 99.8 61 73.8
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 8.5e-19 98.6 296 31.8
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 2.5e-18 97.1 296 31.8
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 2.7e-17 93.6 59 71.2
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 3.0e-16 90.1 117 47.0
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 1.3e-14 84.7 111 49.5
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 7.0e-13 79.0 94 47.9
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 7.7e-12 75.5 92 56.5
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 3.6e-09 66.6 73 57.5
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 3.6e-09 66.6 136 40.4
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 8.3e-06 55.5 78 42.3


User provided reference genes

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