Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1726.8 938 100.0
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 1.4e-280 969.9 881 61.6
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 1.6e-276 956.4 879 61.3
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 6.7e-259 897.9 883 57.2
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 2.1e-257 892.9 826 60.3
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 3.1e-256 889.0 832 58.9
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 3.1e-256 889.0 860 59.1
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 9.0e-256 887.5 859 58.1
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 1.2e-255 887.1 914 56.9
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 5.8e-255 884.8 872 57.6
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 9.9e-255 884.0 873 57.6
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 2.9e-254 882.5 875 57.4
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 2.9e-254 882.5 880 58.2
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 6.4e-254 881.3 835 59.5
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 1.1e-253 880.6 885 57.7
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 1.4e-253 880.2 837 58.8
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 1.4e-253 880.2 832 58.7
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 1.4e-253 880.2 835 59.4
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 1.9e-253 879.8 836 59.2
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 3.2e-253 879.0 831 59.6
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 5.5e-253 878.2 868 58.6
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 7.1e-253 877.9 861 57.8
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 9.3e-253 877.5 837 58.7
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 4.6e-252 875.2 841 59.8
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 4.6e-252 875.2 825 59.6
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 6.0e-252 874.8 877 58.0
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 7.9e-252 874.4 887 56.6
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 7.9e-252 874.4 879 57.7
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 1.0e-251 874.0 880 57.2
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 1.0e-251 874.0 829 59.1
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 2.3e-251 872.8 915 56.9
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 3.0e-251 872.5 883 57.3
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 3.0e-251 872.5 896 56.9
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 1.5e-250 870.2 889 56.7
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 1.3e-249 867.1 873 57.2
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 1.3e-249 867.1 876 56.8
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 1.6e-249 866.7 890 56.2
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 1.6e-249 866.7 915 56.7
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 2.1e-249 866.3 906 56.5
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 2.1e-249 866.3 871 56.7
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 2.8e-249 865.9 824 59.3
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 4.8e-249 865.1 861 57.4
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 4.8e-249 865.1 891 57.8
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 1.4e-248 863.6 885 56.2
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 1.8e-248 863.2 845 57.8
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 3.4e-247 859.0 863 56.5
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 4.5e-247 858.6 828 56.9
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 1.3e-246 857.1 853 56.9
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 3.8e-246 855.5 833 58.2
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 6.5e-246 854.7 833 57.6
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 8.4e-246 854.4 831 57.6
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 1.1e-245 854.0 847 55.5
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 1.9e-245 853.2 844 57.5
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 3.2e-245 852.4 846 57.2
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 4.2e-245 852.0 876 55.6
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 2.7e-244 849.4 895 56.8
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 2.7e-244 849.4 848 55.8
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 2.7e-244 849.4 864 56.1
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 4.6e-244 848.6 903 55.9
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 4.6e-244 848.6 868 55.8
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 2.3e-243 846.3 831 57.6
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 3.9e-243 845.5 856 56.9
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 8.7e-243 844.3 893 54.9
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 1.9e-242 843.2 870 56.8
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 9.6e-242 840.9 839 57.7
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 1.3e-241 840.5 826 57.4
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 1.6e-241 840.1 834 58.2
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 2.1e-241 839.7 868 54.7
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 2.8e-241 839.3 868 55.3
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 1.8e-240 836.6 872 57.2
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 3.1e-240 835.9 862 56.6
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 6.9e-240 834.7 855 55.6
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 1.5e-239 833.6 923 53.5
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 2.0e-239 833.2 873 54.6
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 5.9e-239 831.6 895 53.3
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 5.9e-239 831.6 862 55.8
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 1.0e-238 830.9 852 56.0
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.3e-238 830.5 827 57.2
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 1.7e-238 830.1 840 57.1
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 5.0e-238 828.6 821 57.1
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 5.5e-237 825.1 834 56.2
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 7.9e-236 821.2 828 54.7
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 4.8e-233 812.0 868 54.5
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 7.7e-231 804.7 868 54.5
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 1.7e-230 803.5 790 57.5
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 1.2e-228 797.3 861 53.2
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 1.2e-228 797.3 868 54.5
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 2.1e-228 796.6 881 52.7
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 3.9e-227 792.3 823 55.4
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 3.3e-226 789.3 864 52.9
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 7.4e-226 788.1 767 58.3
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 1.4e-224 783.9 851 54.3
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 3.1e-224 782.7 743 58.7
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 6.9e-224 781.6 871 52.9
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 6.9e-224 781.6 812 56.5
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 1.0e-222 777.7 874 52.3
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 4.7e-220 768.8 891 51.4
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 7.4e-218 761.5 871 52.2
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 9.7e-218 761.1 874 51.8
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 9.7e-218 761.1 831 55.7
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 1.1e-216 757.7 846 52.4
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 2.4e-216 756.5 873 52.0
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 2.4e-216 756.5 873 52.0
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 9.1e-216 754.6 869 52.0
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 9.1e-216 754.6 869 52.0
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 1.2e-215 754.2 870 51.5
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 2.0e-215 753.4 874 51.9
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 1.0e-214 751.1 872 51.1
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 1.0e-214 751.1 872 51.1
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 2.9e-214 749.6 872 51.6
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 1.5e-213 747.3 872 51.4
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 3.6e-212 742.7 754 56.4
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 1.2e-207 727.6 848 51.4
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 7.7e-207 724.9 872 51.4
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 3.8e-206 722.6 867 49.3
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 3.7e-201 706.1 869 48.6
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 3.7e-201 706.1 869 48.6
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 1.1e-200 704.5 870 49.5
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 1.5e-197 694.1 762 55.1
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 6.6e-182 642.1 876 46.1
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 4.7e-164 582.8 643 53.5
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 7.1e-160 568.9 649 51.0
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.4e-152 544.7 489 58.1
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 5.4e-152 542.7 955 39.1
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 5.6e-149 532.7 711 46.4
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 1.8e-147 527.7 777 45.4
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 4.8e-132 476.5 781 41.5
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 1.8e-126 458.0 497 52.9
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 1.7e-121 441.4 612 46.7
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.5e-120 436.4 336 64.3
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 3.0e-118 430.6 509 55.0
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.9e-106 389.8 401 53.4
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.0e-102 377.5 399 51.1
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 8.5e-97 359.4 518 40.7
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 1.3e-84 318.9 500 47.6
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.7e-84 317.4 268 66.4
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 1.1e-83 315.8 279 65.2
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 3.0e-78 297.7 387 51.4
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 1.2e-66 259.2 426 43.2
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 9.2e-59 233.0 238 58.0
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 6.6e-57 226.9 520 31.7
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 2.2e-52 211.8 159 64.8
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 1.3e-41 176.0 132 72.0
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.0e-41 174.9 132 71.2
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 1.8e-38 165.6 247 43.3
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 1.4e-35 156.0 227 47.6
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.9e-27 129.0 466 28.3
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 1.3e-23 116.3 75 69.3
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.3e-12 79.7 140 45.0
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 2.8e-07 62.0 33 78.8
arahy.Tifrunner.gnm1.ann1.C9QR92 Arachis hypogaea HOM05D001518 ORTHO05D002719 1.8e-06 59.3 40 77.5
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 3.1e-06 58.5 47 53.2


User provided reference genes

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