Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G5619 Papaver somniferum HOM05D006756 ORTHO05D001869 1.9e-303 1045.0 534 100.0
PSO170G5384 Papaver somniferum HOM05D006756 ORTHO05D001869 3.3e-279 964.5 538 93.7
PSO017G1657 Papaver somniferum HOM05D006756 ORTHO05D001869 6.7e-264 913.7 536 89.7
PSO017G1072 Papaver somniferum HOM05D006756 ORTHO05D001869 2.9e-227 792.0 537 81.9
TAR625G0109 Trochodendron aralioides HOM05D006756 ORTHO05D001869 4.8e-97 359.4 597 42.5
TAR636G0745 Trochodendron aralioides HOM05D006756 ORTHO05D001869 3.5e-87 326.6 586 40.8
Gohir.A06G055000 Gossypium hirsutum HOM05D006756 ORTHO05D001869 5.8e-74 282.7 583 37.6
Dinv36508 Davidia involucrata HOM05D006756 ORTHO05D001869 1.7e-73 281.2 563 37.5
Atru.chr7.1133 Acer truncatum HOM05D006756 ORTHO05D001869 2.1e-71 274.2 570 38.9
Gorai.010G063000 Gossypium raimondii HOM05D006756 ORTHO05D001869 2.1e-71 274.2 584 37.0
Gohir.D06G054000 Gossypium hirsutum HOM05D006756 ORTHO05D001869 3.5e-71 273.5 592 37.2
GSVIVG01015553001 Vitis vinifera HOM05D006756 ORTHO05D001869 1.7e-70 271.2 548 39.4
Nn2g12064 Nelumbo nucifera HOM05D006756 ORTHO05D001869 3.9e-70 270.0 587 37.8
MBI01_g36593_MAGBIO Magnolia biondii HOM05D006756 ORTHO05D001869 8.6e-70 268.9 562 39.0
Potri.018G129900 Populus trichocarpa HOM05D006756 ORTHO05D001869 1.1e-69 268.5 516 38.8
Duzib168G2156 Durio zibethinus HOM05D006756 ORTHO05D001869 1.5e-69 268.1 536 39.6
Sabra18G0110400 Salix brachista HOM05D006756 ORTHO05D001869 4.3e-69 266.5 514 39.7
Thecc.09G128500 Theobroma cacao HOM05D006756 ORTHO05D001869 3.1e-67 260.4 580 37.1
QL02p088845 Quercus lobata HOM05D006756 ORTHO05D001869 5.2e-67 259.6 518 35.9
Manes.14G133500 Manihot esculenta HOM05D006756 ORTHO05D001869 8.9e-67 258.8 533 36.8
CSS0003155 Camellia sinensis var. sinensis HOM05D006756 ORTHO05D001869 4.4e-66 256.5 583 37.4
Prupe.7G245100 Prunus persica HOM05D006756 ORTHO05D001869 5.8e-66 256.1 526 38.4
MD15G1171200 Malus domestica HOM05D006756 ORTHO05D001869 1.3e-65 255.0 542 39.7
Cfa003391 Carpinus fangiana HOM05D006756 ORTHO05D001869 1.4e-64 251.5 530 35.3
Ciclev10007561m.g Citrus clementina HOM05D006756 ORTHO05D001869 1.9e-64 251.1 554 38.1
TAR636G2086 Trochodendron aralioides HOM05D006756 ORTHO05D001869 5.4e-64 249.6 385 44.2
MD02G1029800 Malus domestica HOM05D006756 ORTHO05D001869 4.6e-63 246.5 541 39.2
Cpa.g.sc46.13 Carica papaya HOM05D006756 ORTHO05D001869 3.0e-62 243.8 606 34.7
Actinidia21975 Actinidia chinensis HOM05D006756 ORTHO05D001869 4.3e-61 240.0 576 34.4
TWI34G1307 Tripterygium wilfordii HOM05D006756 ORTHO05D001869 9.6e-61 238.8 557 35.7
Lj1g0024911 Lotus japonicus HOM05D006756 ORTHO05D001869 6.0e-55 219.5 543 36.1
CiPaw.03G245600 Carya illinoinensis HOM05D006756 ORTHO05D001869 3.0e-54 217.2 519 34.5
Glyma.04G146900 Glycine max HOM05D006756 ORTHO05D001869 3.0e-54 217.2 551 35.2
ClCG06G011280 Citrullus lanatus HOM05D006756 ORTHO05D001869 3.9e-54 216.9 542 36.0
Aqoxy7G02256 Aquilegia oxysepala HOM05D006756 ORTHO05D001869 1.1e-53 215.3 410 42.0
Haze_25558 Corylus avellana HOM05D006756 ORTHO05D001869 4.3e-53 213.4 631 30.9
Cc06_g08320 Coffea canephora HOM05D006756 ORTHO05D001869 1.3e-52 211.8 553 33.3
RcHm_v2.0_Chr2g0088181 Rosa chinensis HOM05D006756 ORTHO05D001869 1.6e-52 211.5 528 36.6
MELO3C010331.2 Cucumis melo HOM05D006756 ORTHO05D001869 4.8e-52 209.9 536 35.4
Lalb_Chr11g0072181 Lupinus albus HOM05D006756 ORTHO05D001869 1.1e-51 208.8 569 34.4
Migut.K00444 Erythranthe guttata HOM05D006756 ORTHO05D001869 1.8e-51 208.0 546 33.3
FvH4_1g03050 Fragaria vesca HOM05D006756 ORTHO05D001869 5.3e-51 206.5 575 35.8
CsaV3_1G030330 Cucumis sativus L. HOM05D006756 ORTHO05D001869 6.9e-51 206.1 536 36.2
CANSAT11G2071 Cannabis sativa HOM05D006756 ORTHO05D001869 1.7e-49 201.4 566 34.8
Eucgr.C01517 Eucalyptus grandis HOM05D006756 ORTHO05D001869 3.8e-49 200.3 529 33.5
PGR142G2180 Punica granatum HOM05D006756 ORTHO05D001869 1.4e-48 198.4 514 35.6
arahy.Tifrunner.gnm1.ann1.L57GI5 Arachis hypogaea HOM05D006756 ORTHO05D001869 1.9e-48 198.0 555 33.9
ECA236G0350 Erigeron canadensis HOM05D006756 ORTHO05D001869 1.9e-48 198.0 513 33.7
Hund09258 Selenicereus undatus HOM05D006756 ORTHO05D001869 2.4e-48 197.6 560 31.1
Sopen07g004070 Solanum pennellii HOM05D006756 ORTHO05D001869 2.4e-48 197.6 579 33.3
VMungo1309G0147 Vigna mungo HOM05D006756 ORTHO05D001869 2.4e-48 197.6 561 34.9
Nitab4.5_0006268g0010 Nicotiana tabacum HOM05D006756 ORTHO05D001869 9.3e-48 195.7 560 32.9
Sed0004031 Sechium edule HOM05D006756 ORTHO05D001869 1.2e-47 195.3 536 34.5
HanXRQChr06g0180441 Helianthus annuus HOM05D006756 ORTHO05D001869 2.1e-47 194.5 529 32.9
Medtr2g072590 Medicago truncatula HOM05D006756 ORTHO05D001869 3.5e-47 193.7 534 31.6
TPR.G9536 Trifolium pratense HOM05D006756 ORTHO05D001869 7.8e-47 192.6 550 32.0
Oeu058044.1 Olea europaea HOM05D006756 ORTHO05D001869 1.3e-46 191.8 542 33.9
Psat1g024440 Pisum sativum HOM05D006756 ORTHO05D001869 1.7e-46 191.4 548 33.9
Rhsim01G0068000 Rhododendron simsii HOM05D006756 ORTHO05D001869 2.3e-46 191.0 676 31.2
vmacro20571 Vaccinium macrocarpon HOM05D006756 ORTHO05D001869 3.9e-46 190.3 608 30.6
Peaxi162Scf00046g00819 Petunia axillaris HOM05D006756 ORTHO05D001869 5.1e-46 189.9 572 32.2
Solyc07g008190.4 Solanum lycopersicum HOM05D006756 ORTHO05D001869 6.6e-46 189.5 571 32.2
arahy.Tifrunner.gnm1.ann1.BW9NFB Arachis hypogaea HOM05D006756 ORTHO05D001869 7.3e-45 186.0 559 32.9
Medtr7g033910 Medicago truncatula HOM05D006756 ORTHO05D001869 7.3e-45 186.0 544 32.7
CAN.G573.9 Capsicum annuum HOM05D006756 ORTHO05D001869 8.1e-44 182.6 571 32.4
EL10Ac8g18682 Beta vulgaris HOM05D006756 ORTHO05D001869 1.8e-43 181.4 554 32.1
Ca_02761_v3 Cicer arietinum L. HOM05D006756 ORTHO05D001869 3.1e-43 180.6 547 33.8
Duzib150G0144 Durio zibethinus HOM05D006756 ORTHO05D001869 3.1e-43 180.6 379 37.2
BcaC03g13743 Brassica carinata HOM05D006756 ORTHO05D001869 2.0e-42 177.9 532 32.3
CARHR192620 Cardamine hirsuta HOM05D006756 ORTHO05D001869 2.0e-42 177.9 539 32.7
Lsat_1_v5_gn_8_58441 Lactuca sativa HOM05D006756 ORTHO05D001869 7.6e-42 176.0 515 33.4
Thhalv10012771m.g Eutrema salsugineum HOM05D006756 ORTHO05D001869 1.3e-41 175.3 529 32.1
THA.LOC104811027 Tarenaya hassleriana HOM05D006756 ORTHO05D001869 6.4e-41 172.9 558 31.5
AUR62013339 Chenopodium quinoa HOM05D006756 ORTHO05D001869 1.4e-40 171.8 549 31.0
Carub.0006s1860 Capsella rubella HOM05D006756 ORTHO05D001869 1.9e-40 171.4 551 31.4
AUR62011148 Chenopodium quinoa HOM05D006756 ORTHO05D001869 1.9e-40 171.4 553 30.7
A10p19720 Brassica napus HOM05D007647 ORTHO05D009644 1.6e-39 168.3 515 31.8
Sed0021917 Sechium edule HOM05D006756 ORTHO05D001869 1.6e-39 168.3 423 33.8
BcaB05g22863 Brassica carinata HOM05D006756 ORTHO05D001869 3.5e-39 167.2 521 31.7
Ah.09g225260 Amaranthus hybridus HOM05D006756 ORTHO05D001869 4.6e-39 166.8 559 30.1
AT5G20200 Arabidopsis thaliana HOM05D006756 ORTHO05D001869 4.6e-39 166.8 548 32.7
BraA10t44048Z Brassica rapa HOM05D006756 ORTHO05D001869 1.0e-38 165.6 530 30.6
AL6G31760 Arabidopsis lyrata HOM05D006756 ORTHO05D001869 1.3e-38 165.2 545 30.8
Aa31LG1G14420 Aethionema arabicum HOM05D006756 ORTHO05D001869 1.8e-38 164.9 551 31.9
Sp6g24200 Schrenkiella parvula HOM05D006756 ORTHO05D001869 3.0e-38 164.1 526 31.0
SGA_v2.0_scaffold464G52008 Striga asiatica HOM05D006756 ORTHO05D001869 8.7e-38 162.5 533 31.5
BcaC04g19408 Brassica carinata HOM05D006756 ORTHO05D001869 1.9e-37 161.4 518 31.5
Sc18g0000500 Simmondsia chinensis HOM05D006756 ORTHO05D001869 2.5e-37 161.0 382 34.3
Phvul.009G207200 Phaseolus vulgaris HOM05D006756 ORTHO05D001869 4.3e-37 160.2 496 32.5
BcaB08g36540 Brassica carinata HOM05D006756 ORTHO05D001869 5.6e-37 159.8 527 31.3
DCAR_017806 Daucus carota HOM05D006756 ORTHO05D001869 3.1e-35 154.1 565 31.5
SalBow1G7291 Salvia bowleyana HOM05D006756 ORTHO05D001869 3.1e-35 154.1 556 30.0
Nitab4.5_0000028g0240 Nicotiana tabacum HOM05D006756 ORTHO05D001869 2.6e-34 151.0 594 28.8
unitig_748.g7157 Utricularia gibba HOM05D006756 ORTHO05D001869 1.0e-33 149.1 575 30.1
FAN26G0517 Fragaria x ananassa HOM05D006756 ORTHO05D001869 2.2e-33 147.9 563 31.4
FAN23G1563 Fragaria x ananassa HOM05D006756 ORTHO05D001869 4.9e-33 146.7 557 31.8
FAN28G3026 Fragaria x ananassa HOM05D006756 ORTHO05D001869 1.1e-32 145.6 557 31.1
C09p56010 Brassica napus HOM05D007647 ORTHO05D009644 3.5e-31 140.6 499 30.9
Gohir.D05G016600 Gossypium hirsutum HOM05D006756 ORTHO05D001869 1.4e-27 128.6 497 29.8
HanXRQChr05g0140241 Helianthus annuus HOM05D006756 ORTHO05D001869 4.5e-26 123.6 172 44.2
Glyma.06G217600 Glycine max HOM05D006756 ORTHO05D001869 9.3e-24 115.9 304 36.5
COL.COLO4_35103 Corchorus olitorius HOM05D006756 ORTHO05D001869 1.6e-23 115.2 280 36.1
ATR1120G177 Amborella trichopoda HOM05D006756 ORTHO05D001869 1.0e-22 112.5 281 32.0
Dinv41496 Davidia involucrata HOM05D006756 ORTHO05D001869 1.4e-19 102.1 148 41.9
CDE07G1072 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 4.5e-18 97.1 268 30.2
Glyma.06G217700 Glycine max HOM05D006756 ORTHO05D001869 1.3e-17 95.5 163 41.1
Zm00001eb386510 Zea mays HOM05D006756 ORTHO05D001869 5.1e-14 83.6 507 26.8
CDE04G3330 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 4.3e-13 80.5 252 29.4
HanXRQChr05g0140231 Helianthus annuus HOM05D006756 ORTHO05D001869 8.2e-12 76.3 195 36.4
Lj2A36T50 Lonicera japonica HOM05D003044 ORTHO05D001869 8.2e-12 76.3 357 27.2
MBI11_g01313_MAGBIO Magnolia biondii HOM05D003044 ORTHO05D001869 8.2e-12 76.3 546 26.0
PSO339G5639 Papaver somniferum HOM05D003044 ORTHO05D001869 9.1e-11 72.8 383 27.2
PSO384G0573 Papaver somniferum HOM05D003044 ORTHO05D001869 1.2e-10 72.4 548 25.0
Nn6g34609 Nelumbo nucifera HOM05D003044 ORTHO05D001869 1.5e-10 72.0 340 25.6
Duzib187G1404 Durio zibethinus HOM05D006756 ORTHO05D001869 2.6e-10 71.2 361 29.1
Ciclev10014057m.g Citrus clementina HOM05D003044 ORTHO05D001869 4.5e-10 70.5 530 24.0
Mapoly0006s0069 Marchantia polymorpha HOM05D023241 ORTHO05D023499 4.5e-10 70.5 542 24.5
Nn2g14384 Nelumbo nucifera HOM05D003044 ORTHO05D001869 4.5e-10 70.5 299 28.4
ATR0697G055 Amborella trichopoda HOM05D003044 ORTHO05D001869 5.9e-10 70.1 574 25.4
PGR044G1498 Punica granatum HOM05D003044 ORTHO05D001869 7.7e-10 69.7 324 27.2
Actinidia40482 Actinidia chinensis HOM05D006756 ORTHO05D001869 2.2e-09 68.2 135 37.0
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 2.2e-09 68.2 360 27.5
Dinv03806 Davidia involucrata HOM05D003044 ORTHO05D001869 2.2e-09 68.2 546 26.0
Peaxi162Scf00120g00721 Petunia axillaris HOM05D003044 ORTHO05D001869 6.5e-09 66.6 318 27.0
TAR633G1492 Trochodendron aralioides HOM05D003044 ORTHO05D001869 6.5e-09 66.6 585 24.1
Eucgr.J00304 Eucalyptus grandis HOM05D003044 ORTHO05D001869 8.5e-09 66.2 311 25.7
Carub.0003s0988 Capsella rubella HOM05D003044 ORTHO05D001869 1.4e-08 65.5 500 28.4
MD07G1063100 Malus domestica HOM05D003044 ORTHO05D001869 1.9e-08 65.1 328 27.1
Nn6g34615 Nelumbo nucifera HOM05D003044 ORTHO05D001869 4.2e-08 63.9 534 22.7
FAN03G0021 Fragaria x ananassa HOM05D003044 ORTHO05D001869 5.5e-08 63.5 344 26.5
AL3G22120 Arabidopsis lyrata HOM05D003044 ORTHO05D001869 7.2e-08 63.2 296 28.7
A03p36670 Brassica napus HOM05D003044 ORTHO05D001869 7.2e-08 63.2 260 29.2
BraA03t12831Z Brassica rapa HOM05D003044 ORTHO05D001869 7.2e-08 63.2 260 29.2
Thhalv10019905m.g Eutrema salsugineum HOM05D003044 ORTHO05D001869 7.2e-08 63.2 328 26.5
FAN10G0351 Fragaria x ananassa HOM05D003044 ORTHO05D001869 7.2e-08 63.2 344 26.7
CSS0000792 Camellia sinensis var. sinensis HOM05D003044 ORTHO05D001869 1.2e-07 62.4 382 26.4
Rhsim09G0140200 Rhododendron simsii HOM05D003044 ORTHO05D001869 1.2e-07 62.4 349 25.2
MBI05_g36784_MAGBIO Magnolia biondii HOM05D003044 ORTHO05D001869 1.6e-07 62.0 568 24.5
FvH4_7g05480 Fragaria vesca HOM05D003044 ORTHO05D001869 2.1e-07 61.6 344 26.7
vmacro10333 Vaccinium macrocarpon HOM05D003044 ORTHO05D001869 2.1e-07 61.6 343 26.2
Duzib114G0797 Durio zibethinus HOM05D003044 ORTHO05D001869 2.7e-07 61.2 275 28.7
Lj6g0024518 Lotus japonicus HOM05D003044 ORTHO05D001869 2.7e-07 61.2 334 25.7
GSVIVG01034601001 Vitis vinifera HOM05D003044 ORTHO05D001869 2.7e-07 61.2 576 24.3
Sopen11g002290 Solanum pennellii HOM05D003044 ORTHO05D001869 3.6e-07 60.8 328 26.2
BolC3t16701H Brassica oleracea HOM05D003044 ORTHO05D001869 4.7e-07 60.5 260 29.6
Solyc11g006390.2 Solanum lycopersicum HOM05D003044 ORTHO05D001869 4.7e-07 60.5 328 26.5
CSS0031943 Camellia sinensis var. sinensis HOM05D003044 ORTHO05D001869 6.1e-07 60.1 540 24.3
FAN10G1738 Fragaria x ananassa HOM05D003044 ORTHO05D001869 6.1e-07 60.1 345 27.0
Oeu025606.1 Olea europaea HOM05D003044 ORTHO05D001869 6.1e-07 60.1 290 25.5
AT3G10650 Arabidopsis thaliana HOM05D003044 ORTHO05D001869 7.9e-07 59.7 500 25.4
TWI63G0823 Tripterygium wilfordii HOM05D003044 ORTHO05D001869 1.0e-06 59.3 285 27.0
Cpa.g.sc33.124 Carica papaya HOM05D003044 ORTHO05D001869 2.3e-06 58.2 404 24.8
MD02G1257800 Malus domestica HOM05D003044 ORTHO05D001869 2.3e-06 58.2 317 24.9
Manes.07G084000 Manihot esculenta HOM05D003044 ORTHO05D001869 2.3e-06 58.2 342 26.6
C03p44310 Brassica napus HOM05D003044 ORTHO05D001869 3.0e-06 57.8 262 29.4
Gohir.D04G019000 Gossypium hirsutum HOM05D003044 ORTHO05D001869 3.9e-06 57.4 363 27.3
Sp3g08960 Schrenkiella parvula HOM05D003044 ORTHO05D001869 3.9e-06 57.4 325 27.7
AagrBONN_evm.TU.Sc2ySwM_362.182 Anthoceros agrestis HOM05D023241 ORTHO05D023499 5.1e-06 57.0 525 24.4
RcHm_v2.0_Chr1g0332241 Rosa chinensis HOM05D003044 ORTHO05D001869 5.1e-06 57.0 557 25.1
CsaV3_6G004440 Cucumis sativus L. HOM05D003044 ORTHO05D001869 6.7e-06 56.6 510 24.7
A02p06100 Brassica napus HOM05D006756 ORTHO05D001869 8.8e-06 56.2 167 32.9


User provided reference genes

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