Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 2.3e-62 241.9 111 100.0
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 1.2e-58 229.6 111 94.6
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 1.2e-58 229.6 111 94.6
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 1.2e-58 229.6 111 94.6
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 3.8e-36 154.8 113 63.7
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 7.9e-34 147.1 113 63.7
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 8.1e-31 137.1 111 54.1
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.1e-30 136.7 111 54.1
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.4e-30 136.3 111 54.1
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 3.1e-30 135.2 111 54.1
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 4.0e-30 134.8 111 53.2
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 4.0e-30 134.8 111 53.2
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 9.0e-30 133.7 111 53.2
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 9.0e-30 133.7 113 54.0
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 9.0e-30 133.7 113 56.6
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 1.5e-29 132.9 111 54.1
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 2.6e-29 132.1 113 57.5
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 9.9e-29 130.2 113 56.6
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 1.3e-28 129.8 113 58.4
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 2.2e-28 129.0 113 53.1
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 6.4e-28 127.5 111 52.3
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 6.4e-28 127.5 113 54.9
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 6.4e-28 127.5 113 53.1
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 8.4e-28 127.1 113 54.0
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 8.4e-28 127.1 113 54.0
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 1.1e-27 126.7 112 56.2
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 1.1e-27 126.7 112 56.2
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 1.4e-27 126.3 111 54.1
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 1.4e-27 126.3 111 55.9
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 1.9e-27 125.9 111 55.0
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 1.9e-27 125.9 112 56.2
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 2.4e-27 125.6 113 53.1
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 2.4e-27 125.6 113 54.9
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 3.2e-27 125.2 113 53.1
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 3.2e-27 125.2 113 53.1
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 4.2e-27 124.8 113 53.1
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 5.5e-27 124.4 111 50.5
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 7.1e-27 124.0 113 53.1
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 9.3e-27 123.6 111 54.1
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 9.3e-27 123.6 113 51.3
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 1.2e-26 123.2 111 49.5
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 2.7e-26 122.1 111 53.2
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 2.7e-26 122.1 113 51.3
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 2.7e-26 122.1 113 52.2
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 2.7e-26 122.1 113 52.2
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 2.7e-26 122.1 113 52.2
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 3.5e-26 121.7 111 51.4
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 3.5e-26 121.7 113 51.3
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 4.6e-26 121.3 113 52.2
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 4.6e-26 121.3 113 51.3
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 6.0e-26 120.9 111 54.1
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 7.9e-26 120.6 111 52.3
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 7.9e-26 120.6 111 48.6
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 1.0e-25 120.2 113 52.2
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 1.8e-25 119.4 111 50.5
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 3.0e-25 118.6 111 50.5
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 3.0e-25 118.6 111 49.5
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 3.0e-25 118.6 111 49.5
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 3.0e-25 118.6 111 49.5
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 3.0e-25 118.6 111 49.5
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 3.0e-25 118.6 111 49.5
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 3.0e-25 118.6 111 49.5
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 3.0e-25 118.6 111 49.5
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 3.0e-25 118.6 111 49.5
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 3.0e-25 118.6 113 50.4
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 3.9e-25 118.2 111 49.5
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 6.7e-25 117.5 111 51.4
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 8.7e-25 117.1 113 48.7
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 8.7e-25 117.1 113 48.7
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 8.7e-25 117.1 113 48.7
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 8.7e-25 117.1 113 48.7
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 1.1e-24 116.7 113 49.6
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 1.9e-24 115.9 111 50.5
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 2.5e-24 115.5 111 48.6
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 3.3e-24 115.2 113 51.3
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 3.3e-24 115.2 111 48.6
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 5.6e-24 114.4 113 49.6
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 9.6e-24 113.6 111 49.5
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 1.6e-23 112.8 113 50.4
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 2.1e-23 112.5 111 48.6
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 2.8e-23 112.1 98 53.1
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 8.2e-23 110.5 113 47.8
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 1.4e-22 109.8 109 51.4
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 1.8e-22 109.4 111 48.6
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 1.8e-22 109.4 113 46.0
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 1.8e-22 109.4 113 46.0
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 2.4e-22 109.0 113 43.4
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 3.1e-22 108.6 113 46.9
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 4.0e-22 108.2 113 46.0
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 9.0e-22 107.1 111 45.9
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 9.0e-22 107.1 103 53.4
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 1.5e-21 106.3 113 48.7
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 1.5e-21 106.3 109 44.0
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 2.0e-21 105.9 100 49.0
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 4.5e-21 104.8 109 48.6
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 4.5e-21 104.8 113 47.8
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 7.6e-21 104.0 88 59.1
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 1.0e-20 103.6 115 47.8
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 1.0e-20 103.6 111 49.5
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 1.7e-20 102.8 109 46.8
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.7e-20 102.8 109 46.8
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.7e-20 102.8 109 46.8
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.7e-20 102.8 109 46.8
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.7e-20 102.8 109 46.8
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.7e-20 102.8 109 46.8
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.7e-20 102.8 109 46.8
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 2.9e-20 102.1 111 40.5
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 3.8e-20 101.7 107 43.0
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 3.8e-20 101.7 111 49.5
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 3.8e-20 101.7 109 47.7
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 1.9e-19 99.4 116 44.8
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 5.5e-19 97.8 113 42.5
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 1.2e-18 96.7 111 41.4
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 2.5e-16 89.0 94 45.7
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 2.5e-16 89.0 113 40.7
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 4.3e-16 88.2 138 39.1
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 6.3e-15 84.3 86 44.2
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 1.1e-14 83.6 77 54.5
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 4.5e-13 78.2 75 49.3
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 4.5e-13 78.2 113 39.8
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 1.0e-12 77.0 72 55.6
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 1.3e-12 76.6 86 41.9
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 8.5e-12 73.9 129 32.6
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 4.2e-11 71.6 71 42.3
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 1.2e-10 70.1 63 55.6
QL08p046069 Quercus lobata HOM05D006029 ORTHO05D007439 2.7e-10 68.9 57 50.9
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 7.9e-10 67.4 70 48.6
Lsat_1_v5_gn_6_81300 Lactuca sativa HOM05D006029 ORTHO05D007439 2.3e-09 65.9 68 48.5
Nitab4.5_0009816g0020 Nicotiana tabacum HOM05D006029 ORTHO05D007439 3.9e-09 65.1 57 47.4
Cc08_g08090 Coffea canephora HOM05D006029 ORTHO05D007439 2.5e-08 62.4 55 47.3
Ca_09543_v3 Cicer arietinum L. HOM05D006029 ORTHO05D007439 1.7e-07 59.7 78 43.6
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 1.1e-06 57.0 113 34.5
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 1.8e-06 56.2 117 30.8
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 5.3e-06 54.7 115 32.2
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 9.1e-06 53.9 115 30.4


User provided reference genes

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