Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 0.0e+00 1140.2 576 100.0
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 2.0e-311 1071.6 587 93.9
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 5.4e-235 817.8 580 76.0
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 3.8e-233 811.6 578 74.7
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 6.6e-233 810.8 579 74.6
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 9.5e-232 807.0 577 74.4
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 8.0e-231 803.9 579 74.4
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 6.8e-230 800.8 579 74.3
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 8.9e-230 800.4 582 74.6
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 5.8e-229 797.7 578 73.9
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 3.2e-227 792.0 579 73.1
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 7.0e-227 790.8 579 73.9
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 9.2e-227 790.4 576 73.6
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 1.0e-225 786.9 576 71.5
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 1.7e-225 786.2 577 72.6
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 2.3e-225 785.8 583 72.0
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 6.6e-225 784.3 579 72.5
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 2.5e-224 782.3 582 71.3
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 4.3e-224 781.6 580 72.9
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.6e-223 779.6 585 72.1
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 1.6e-223 779.6 578 71.8
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 4.7e-223 778.1 578 73.0
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 6.2e-223 777.7 578 72.3
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 6.2e-223 777.7 579 72.0
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 1.1e-222 776.9 581 72.3
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 1.8e-222 776.2 578 71.8
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 5.2e-222 774.6 578 72.3
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 8.9e-222 773.9 588 72.6
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 1.5e-221 773.1 574 73.2
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 4.4e-221 771.5 580 71.6
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 7.5e-221 770.8 597 70.5
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 2.2e-220 769.2 559 72.8
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 3.7e-220 768.5 583 72.2
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 3.7e-220 768.5 579 71.5
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 4.9e-220 768.1 570 72.5
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 1.1e-219 766.9 582 71.8
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 1.6e-218 763.1 598 70.1
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 1.6e-218 763.1 576 71.4
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 2.7e-218 762.3 582 71.1
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 3.5e-218 761.9 581 71.6
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 6.0e-218 761.1 574 71.4
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 7.8e-218 760.8 576 71.5
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 1.0e-217 760.4 570 72.5
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 3.0e-217 758.8 577 72.1
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 5.1e-217 758.1 580 70.7
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.5e-216 756.5 577 71.9
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 1.5e-216 756.5 579 70.5
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 4.3e-216 755.0 579 70.1
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 2.1e-215 752.7 592 70.1
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 3.6e-215 751.9 592 70.1
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 3.6e-215 751.9 574 70.9
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 2.3e-214 749.2 576 70.8
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 4.0e-214 748.4 585 69.6
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 2.6e-213 745.7 577 70.9
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 2.6e-213 745.7 578 68.7
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 2.6e-213 745.7 580 70.5
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 3.4e-213 745.3 575 72.2
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 2.9e-212 742.3 581 69.4
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 4.9e-212 741.5 577 71.1
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 8.3e-212 740.7 577 71.2
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.1e-211 740.3 580 68.3
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 1.4e-211 740.0 575 68.2
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 5.4e-211 738.0 577 70.9
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 9.2e-211 737.3 580 68.1
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 9.2e-211 737.3 580 68.1
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 3.5e-210 735.3 580 69.1
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 4.6e-210 734.9 583 68.3
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.3e-209 733.4 580 68.3
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 6.6e-209 731.1 570 69.3
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 8.6e-209 730.7 577 69.8
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.5e-208 729.2 541 72.6
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 2.5e-208 729.2 583 68.3
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 7.3e-208 727.6 569 67.8
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 2.1e-207 726.1 576 68.4
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.4e-206 722.6 607 65.1
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 1.5e-205 719.9 555 70.8
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 1.5e-205 719.9 578 67.8
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 3.4e-205 718.8 637 63.7
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 7.1e-203 711.1 570 67.0
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 2.7e-202 709.1 573 65.6
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 6.0e-202 708.0 678 60.2
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 1.0e-201 707.2 592 64.5
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 2.5e-200 702.6 575 67.3
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 9.6e-200 700.7 563 67.7
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 4.7e-199 698.4 563 66.4
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 8.1e-199 697.6 587 64.7
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 1.4e-198 696.8 537 69.8
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 1.3e-196 690.3 579 67.4
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 2.9e-196 689.1 563 67.7
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 4.9e-196 688.3 571 66.0
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 6.4e-196 688.0 567 66.3
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 5.4e-195 684.9 567 66.3
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 5.4e-195 684.9 567 66.3
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 5.4e-195 684.9 567 66.3
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 2.7e-194 682.6 566 65.7
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 2.7e-194 682.6 568 64.8
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 4.6e-194 681.8 590 64.1
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 6.6e-193 677.9 592 66.4
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 8.7e-193 677.6 502 71.3
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 2.4e-190 669.5 740 53.9
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 5.3e-190 668.3 516 70.3
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 9.9e-189 664.1 508 71.5
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 7.1e-187 657.9 559 64.2
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 2.1e-186 656.4 578 63.7
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 8.1e-183 644.4 491 69.0
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 4.0e-182 642.1 566 63.6
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 1.8e-177 626.7 575 62.8
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 1.0e-169 600.9 598 59.0
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 5.3e-166 588.6 418 73.2
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 2.7e-138 496.5 570 54.0
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 1.0e-137 494.6 384 69.5
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 8.5e-132 474.9 577 52.5
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 9.8e-128 461.5 503 54.5
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 9.8e-128 461.5 503 54.5
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 9.8e-128 461.5 503 54.5
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 1.8e-126 457.2 484 55.2
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 4.7e-114 416.0 261 81.2
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 3.4e-112 409.8 351 66.4
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 3.9e-84 316.6 359 52.9
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 3.1e-81 307.0 259 64.9
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 9.9e-80 302.0 194 80.4
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 3.5e-77 293.5 241 67.2
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 1.5e-75 288.1 163 87.1
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 1.8e-73 281.2 575 39.1
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 1.3e-71 275.0 165 83.6
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 1.0e-68 265.4 337 50.7
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 1.2e-64 251.9 426 41.3
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 1.9e-62 244.6 197 71.1
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 2.1e-58 231.1 171 71.3
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 4.8e-58 229.9 269 50.9
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 3.2e-54 217.2 428 39.5
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 2.5e-51 207.6 169 64.5
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 5.3e-49 199.9 138 73.9
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.3e-47 195.3 134 70.9
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 1.2e-40 172.2 601 30.4
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 1.2e-40 172.2 113 78.8
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 2.6e-40 171.0 172 59.9
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 1.0e-36 159.1 124 71.0
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 3.0e-36 157.5 214 49.5
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 7.7e-32 142.9 155 54.2
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 3.0e-28 131.0 68 91.2
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 4.8e-26 123.6 156 47.4
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 2.2e-23 114.8 78 71.8
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 1.4e-20 105.5 185 38.4
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 1.7e-18 98.6 58 81.0
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 7.0e-17 93.2 71 63.4
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 1.6e-16 92.0 68 66.2
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 1.6e-16 92.0 198 35.9
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.0e-15 89.4 82 58.5
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 5.0e-15 87.0 90 52.2
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 4.2e-14 84.0 66 72.7
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 9.4e-14 82.8 138 39.9
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 6.1e-13 80.1 46 87.0
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 1.4e-12 79.0 119 42.9
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 5.2e-12 77.0 49 77.6
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 2.0e-08 65.1 51 60.8
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 2.7e-08 64.7 62 59.7
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 4.5e-08 63.9 36 80.6
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 7.7e-08 63.2 51 58.8


User provided reference genes

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