Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 1.7e-222 775.8 415 100.0
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 1.9e-218 762.3 415 98.3
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 1.5e-186 656.4 413 80.9
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 6.3e-185 651.0 415 81.0
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 3.1e-184 648.7 415 79.8
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 1.3e-182 643.3 415 78.1
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 2.2e-182 642.5 415 77.6
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 1.4e-181 639.8 415 78.1
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 7.2e-181 637.5 415 77.6
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 2.7e-180 635.6 415 77.1
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 4.6e-180 634.8 415 78.1
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 7.9e-180 634.0 415 77.8
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.5e-178 629.8 413 77.0
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 2.0e-178 629.4 415 77.8
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 7.4e-178 627.5 414 77.3
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 9.7e-178 627.1 415 76.6
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 1.3e-177 626.7 415 76.4
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 2.8e-177 625.5 415 75.7
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 2.8e-177 625.5 446 72.0
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 3.7e-177 625.2 415 76.1
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 3.7e-177 625.2 414 76.6
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 3.7e-177 625.2 415 76.9
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 4.8e-177 624.8 414 75.6
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 6.3e-177 624.4 415 75.9
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 8.2e-177 624.0 415 75.9
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 8.2e-177 624.0 415 75.9
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 8.2e-177 624.0 415 76.6
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 1.8e-176 622.9 415 76.1
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 2.4e-176 622.5 410 76.8
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 2.4e-176 622.5 415 75.9
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 3.1e-176 622.1 415 75.9
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 3.1e-176 622.1 415 75.4
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.2e-175 620.2 415 75.7
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 2.6e-175 619.0 417 76.7
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 3.4e-175 618.6 414 74.4
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.0e-174 617.1 410 76.3
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 1.0e-174 617.1 415 76.1
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.8e-174 615.1 415 74.7
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 5.0e-174 614.8 415 74.5
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 6.5e-174 614.4 415 74.7
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 8.5e-174 614.0 412 75.5
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.4e-173 613.2 415 74.7
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 1.9e-173 612.8 411 75.9
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 2.5e-173 612.5 410 76.1
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 5.5e-173 611.3 414 73.7
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 7.2e-173 610.9 414 74.2
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 9.4e-173 610.5 415 74.2
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 1.6e-172 609.8 416 74.8
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 3.6e-172 608.6 415 74.7
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 7.9e-172 607.4 415 74.7
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.9e-172 607.4 415 74.9
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 7.9e-172 607.4 415 73.5
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 1.0e-171 607.1 415 74.7
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 1.4e-171 606.7 415 74.2
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 1.4e-171 606.7 415 74.2
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 1.4e-171 606.7 415 73.7
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 1.8e-171 606.3 415 73.7
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 2.3e-171 605.9 415 73.7
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 3.9e-171 605.1 410 73.7
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 5.1e-171 604.7 415 74.2
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 6.7e-171 604.4 415 74.0
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 6.7e-171 604.4 414 73.4
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 8.8e-171 604.0 414 74.2
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 1.5e-170 603.2 410 76.1
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 2.6e-170 602.4 417 73.9
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 3.3e-170 602.1 415 72.8
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 4.4e-170 601.7 415 74.0
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 9.7e-170 600.5 415 74.0
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 3.7e-169 598.6 412 73.3
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 1.1e-168 597.0 427 72.4
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 1.1e-168 597.0 427 72.4
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.1e-168 597.0 414 72.9
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 1.4e-168 596.7 415 73.0
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.4e-168 596.7 414 72.2
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 1.4e-168 596.7 414 72.2
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 2.4e-168 595.9 411 74.2
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 2.4e-168 595.9 427 72.1
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.4e-168 595.9 415 72.0
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 5.9e-167 591.3 412 72.8
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 2.2e-166 589.3 412 71.6
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.9e-166 589.0 421 71.3
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 2.5e-165 585.9 416 72.4
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 4.2e-165 585.1 415 73.3
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 7.2e-165 584.3 421 70.3
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 1.6e-164 583.2 415 72.5
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 2.1e-164 582.8 414 69.1
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 6.1e-164 581.3 439 69.5
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 1.1e-162 577.0 430 67.7
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 1.1e-157 560.5 411 69.8
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 8.8e-155 550.8 417 69.1
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.7e-153 546.6 372 74.7
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 4.8e-153 545.0 376 73.7
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 2.4e-152 542.7 407 69.0
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 1.3e-150 537.0 411 66.4
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 2.5e-149 532.7 415 66.7
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 9.4e-149 530.8 411 67.4
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 1.8e-147 526.6 413 68.0
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 3.7e-145 518.8 372 72.0
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 4.9e-145 518.5 399 65.4
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 5.6e-141 505.0 325 78.2
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 4.7e-140 501.9 412 64.6
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 2.0e-138 496.5 419 63.2
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 4.4e-138 495.4 400 60.8
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 1.7e-137 493.4 412 59.7
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 8.3e-137 491.1 486 58.4
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 3.4e-122 442.6 306 72.9
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 8.3e-121 438.0 297 74.1
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.4e-120 435.3 281 78.3
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.4e-120 435.3 281 78.3
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.0e-114 416.8 257 80.5
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.7e-113 413.7 277 74.0
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 1.1e-112 411.0 314 67.8
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 3.2e-112 409.5 256 78.9
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 1.5e-98 364.0 314 62.4
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 1.1e-93 347.8 292 66.1
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 1.6e-92 344.0 405 45.9
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 1.3e-86 324.3 285 61.1
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 8.2e-76 288.5 206 70.4
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 4.1e-75 286.2 191 77.0
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.6e-71 272.7 242 60.3
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 2.5e-69 266.9 185 70.8
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.2e-64 248.8 199 63.3
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 2.1e-63 247.3 173 71.7
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.3e-62 243.8 204 64.2
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 1.5e-58 231.1 404 33.9
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 7.4e-53 212.2 126 84.1
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 9.7e-53 211.8 410 32.7
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 8.2e-52 208.8 321 35.2
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 2.4e-51 207.2 234 51.3
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.7e-44 183.3 200 54.0
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 1.4e-43 181.4 122 70.5
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.1e-43 180.3 126 72.2
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.0e-38 163.7 178 52.8
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 4.0e-38 163.3 102 74.5
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.0e-38 163.3 162 56.8
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 1.6e-34 151.4 415 29.9
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 4.5e-34 149.8 115 66.1
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 7.7e-34 149.1 108 67.6
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 9.5e-32 142.1 80 82.5
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.6e-31 141.4 83 80.7
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 1.5e-24 118.2 111 60.4
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.5e-16 90.9 51 82.4
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 3.3e-16 90.5 95 55.8
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 4.7e-15 86.7 156 36.5
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 6.4e-12 76.3 53 77.4
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.3e-12 75.9 50 72.0
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.0e-09 66.6 71 52.1
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 8.6e-09 65.9 38 84.2
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 1.1e-08 65.5 114 43.9
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 5.6e-08 63.2 55 60.0
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 5.6e-08 63.2 143 37.1
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 8.1e-07 59.3 62 56.5
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 5.2e-06 56.6 146 35.6


User provided reference genes

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