Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 1.1e-167 593.2 303 100.0
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 2.1e-166 589.0 303 99.3
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 4.4e-127 458.4 313 76.4
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.1e-125 453.8 314 76.4
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 1.1e-125 453.8 315 75.6
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 2.4e-125 452.6 309 76.4
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 6.5e-123 444.5 311 74.9
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.4e-122 443.4 309 75.4
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 1.4e-122 443.4 309 75.4
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 5.5e-122 441.4 307 75.9
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 7.2e-122 441.0 309 73.8
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 7.2e-122 441.0 309 73.8
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 1.2e-121 440.3 316 73.1
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 2.1e-121 439.5 316 73.1
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 3.6e-121 438.7 309 75.1
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 4.7e-121 438.3 311 74.3
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 4.7e-121 438.3 311 74.3
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 7.9e-121 437.6 316 73.1
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.0e-120 437.2 309 73.8
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 3.9e-120 435.3 316 72.2
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 5.2e-120 434.9 320 73.1
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 5.2e-120 434.9 309 73.8
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.5e-119 433.3 311 71.7
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 4.4e-119 431.8 308 73.7
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 4.4e-119 431.8 316 71.8
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 2.8e-118 429.1 307 73.6
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 5.3e-117 424.9 312 71.5
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 1.6e-116 423.3 303 73.9
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 2.0e-116 422.9 311 71.1
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 2.6e-116 422.5 350 65.1
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 4.5e-116 421.8 311 72.0
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 7.7e-116 421.0 310 73.5
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 1.0e-115 420.6 307 71.3
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 1.0e-115 420.6 310 71.6
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 1.3e-115 420.2 311 70.1
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.3e-115 420.2 311 70.1
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 2.2e-115 419.5 307 71.3
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 2.2e-115 419.5 313 70.6
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 2.9e-115 419.1 309 69.6
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 5.0e-115 418.3 308 71.1
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 5.0e-115 418.3 312 71.2
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 5.0e-115 418.3 309 69.6
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 6.5e-115 417.9 311 69.8
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 6.5e-115 417.9 312 70.2
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 1.5e-114 416.8 312 70.2
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 1.9e-114 416.4 301 73.8
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 2.5e-114 416.0 312 70.2
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.5e-114 416.0 312 70.5
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 4.2e-114 415.2 312 70.2
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 4.2e-114 415.2 315 69.2
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 5.5e-114 414.8 314 68.8
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 9.4e-114 414.1 311 71.4
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 1.2e-113 413.7 308 72.1
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 1.6e-113 413.3 304 73.4
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 2.1e-113 412.9 313 68.4
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 3.6e-113 412.1 311 70.1
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 3.6e-113 412.1 304 70.7
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 4.7e-113 411.8 308 69.8
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.4e-112 410.2 311 68.5
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.8e-112 409.8 317 66.6
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 3.0e-112 409.1 303 72.3
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 6.7e-112 407.9 309 69.3
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 6.7e-112 407.9 304 70.1
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 8.8e-112 407.5 339 66.1
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 8.8e-112 407.5 303 71.0
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 1.2e-111 407.1 310 69.7
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 1.2e-111 407.1 303 69.6
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 2.0e-111 406.4 310 69.0
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 2.0e-111 406.4 310 69.0
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 2.0e-111 406.4 316 68.4
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 2.6e-111 406.0 311 70.7
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 2.6e-111 406.0 318 67.9
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 4.4e-111 405.2 297 71.7
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 4.4e-111 405.2 311 69.1
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 9.7e-111 404.1 312 67.3
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 1.3e-110 403.7 303 70.6
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 1.3e-110 403.7 305 68.9
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 1.7e-110 403.3 310 68.4
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 2.2e-110 402.9 311 67.5
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 2.8e-110 402.5 312 70.2
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 4.8e-110 401.7 313 66.5
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 9.1e-109 397.5 303 68.6
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 4.5e-108 395.2 298 70.5
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 1.0e-107 394.0 298 71.8
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 1.0e-107 394.0 298 70.8
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 1.0e-107 394.0 298 71.8
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 1.0e-107 394.0 298 71.8
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 1.0e-107 394.0 298 70.8
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 6.5e-107 391.3 252 82.1
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 1.1e-106 390.6 305 67.5
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 5.5e-106 388.3 304 67.1
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 1.2e-105 387.1 314 67.2
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 8.0e-105 384.4 279 73.1
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 1.0e-104 384.0 309 66.3
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 1.0e-104 384.0 308 67.9
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 4.0e-104 382.1 224 84.8
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 3.4e-103 379.0 304 65.5
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 1.8e-101 373.2 335 60.9
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 3.1e-101 372.5 342 59.6
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 4.5e-100 368.6 290 67.9
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 8.6e-99 364.4 348 58.9
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 1.5e-98 363.6 333 60.7
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 2.5e-98 362.8 264 71.6
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.2e-97 360.5 256 73.8
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 1.2e-97 360.5 298 62.4
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 3.7e-94 349.0 321 57.9
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 4.9e-94 348.6 252 75.4
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 1.7e-91 340.1 207 82.6
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 6.6e-91 338.2 203 82.8
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 4.3e-90 335.5 249 73.5
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 4.4e-87 325.5 303 58.4
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 7.5e-87 324.7 310 60.3
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 8.3e-86 321.2 266 63.5
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 3.9e-83 312.4 303 59.7
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 3.1e-80 302.8 260 63.1
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 8.9e-80 301.2 299 55.2
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 4.6e-76 288.9 185 77.8
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 3.3e-66 256.1 259 59.8
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 3.1e-64 249.6 275 53.5
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 5.8e-63 245.4 291 51.5
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 1.7e-62 243.8 376 43.4
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 1.4e-61 240.7 265 55.8
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.7e-59 233.8 191 69.6
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 2.6e-47 193.4 117 85.5
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 1.3e-46 191.0 227 47.1
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 1.4e-45 187.6 183 56.3
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 4.2e-45 186.0 304 42.4
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 2.3e-43 180.3 193 52.8
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 7.4e-42 175.3 120 75.8
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 4.0e-40 169.5 242 43.4
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 7.6e-39 165.2 95 88.4
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 1.4e-37 161.0 199 47.7
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 1.8e-35 154.1 96 85.4
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 3.0e-35 153.3 122 68.0
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.9e-34 150.6 126 65.1
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.9e-34 150.6 126 65.1
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.4e-32 144.4 93 82.8
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.0e-30 138.3 269 39.4
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 6.5e-30 135.6 189 42.9
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 3.9e-27 126.3 80 78.8
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 4.8e-25 119.4 138 50.0
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.8e-24 117.5 99 65.7
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 2.0e-23 114.0 230 38.3
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.3e-17 94.7 105 56.2
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.4e-16 90.5 62 75.8
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 1.3e-09 68.2 42 73.8
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.7e-09 67.8 42 66.7
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 2.8e-09 67.0 129 37.2
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 1.2e-07 61.6 43 67.4
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 1.5e-07 61.2 39 66.7
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 4.5e-07 59.7 46 65.2
Eucgr.I01431 Eucalyptus grandis HOM05D002972 ORTHO05D002272 5.9e-07 59.3 47 48.9
Potri.004G176100 Populus trichocarpa HOM05D002972 ORTHO05D002272 5.9e-07 59.3 41 63.4
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 5.0e-06 56.2 57 59.6
COL.COLO4_17354 Corchorus olitorius HOM05D002972 ORTHO05D002272 8.5e-06 55.5 43 53.5


User provided reference genes

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