Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 6.2e-191 670.6 338 100.0
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 6.2e-183 644.0 339 96.2
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 1.1e-134 483.8 321 74.1
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 1.2e-125 453.8 316 71.2
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 1.2e-125 453.8 316 71.2
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 1.5e-123 446.8 323 68.7
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 2.1e-122 443.0 314 68.5
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 3.6e-122 442.2 324 68.5
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 4.7e-122 441.8 320 66.9
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 3.0e-121 439.1 325 67.1
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 2.0e-120 436.4 314 68.8
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 3.4e-120 435.6 325 66.5
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 3.4e-120 435.6 311 69.8
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 5.7e-120 434.9 356 65.2
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 5.7e-120 434.9 317 68.1
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 9.8e-120 434.1 318 65.1
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 1.3e-119 433.7 318 69.2
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 1.7e-119 433.3 318 65.1
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 1.7e-119 433.3 318 65.1
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 4.9e-119 431.8 320 67.5
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 8.3e-119 431.0 337 66.2
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 1.1e-118 430.6 315 68.3
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 1.1e-118 430.6 312 69.2
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 3.2e-118 429.1 349 63.6
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 9.2e-118 427.6 315 65.4
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 1.2e-117 427.2 316 67.1
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 1.2e-117 427.2 307 69.7
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 1.2e-117 427.2 321 64.8
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 2.7e-117 426.0 342 63.5
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 5.9e-117 424.9 345 64.9
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 7.8e-117 424.5 355 62.0
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 1.0e-116 424.1 329 64.4
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 6.6e-116 421.4 314 67.2
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 6.6e-116 421.4 314 67.2
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 8.6e-116 421.0 343 64.1
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 1.9e-115 419.9 342 62.9
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 1.9e-115 419.9 315 65.1
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 2.5e-115 419.5 326 65.0
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 2.5e-115 419.5 358 60.9
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 4.3e-115 418.7 321 67.0
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 4.3e-115 418.7 315 65.7
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 5.6e-115 418.3 332 62.0
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 7.3e-115 417.9 337 62.6
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 1.6e-114 416.8 334 65.0
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 2.8e-114 416.0 317 65.9
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 4.7e-114 415.2 313 65.2
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 1.0e-113 414.1 339 61.4
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 3.1e-113 412.5 333 62.8
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 4.0e-113 412.1 329 62.9
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 2.0e-112 409.8 321 66.7
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 2.6e-112 409.5 331 62.8
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 2.6e-112 409.5 319 63.9
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 3.4e-112 409.1 278 71.9
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 3.4e-112 409.1 344 60.5
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 3.4e-112 409.1 333 62.2
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 5.8e-112 408.3 318 64.5
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 5.8e-112 408.3 341 61.6
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 7.5e-112 407.9 324 62.7
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 2.9e-111 406.0 321 64.8
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 4.9e-111 405.2 323 63.8
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 6.4e-111 404.8 325 62.5
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 6.4e-111 404.8 325 63.1
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 6.4e-111 404.8 325 63.4
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 6.4e-111 404.8 325 63.1
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 6.4e-111 404.8 325 63.1
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 1.1e-110 404.1 329 62.3
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 1.4e-110 403.7 330 61.2
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 1.9e-110 403.3 328 61.0
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 2.4e-110 402.9 319 63.6
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 7.0e-110 401.4 332 60.8
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 1.2e-109 400.6 341 61.3
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 1.2e-109 400.6 329 60.8
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 1.6e-109 400.2 310 64.2
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 2.7e-109 399.4 266 69.5
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 4.6e-109 398.7 340 62.9
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 6.0e-109 398.3 330 61.8
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 6.6e-108 394.8 308 65.9
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 2.5e-107 392.9 294 65.6
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 1.2e-106 390.6 317 62.1
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 1.2e-106 390.6 317 62.1
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 1.2e-106 390.6 317 62.1
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 2.1e-106 389.8 348 60.3
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 4.7e-106 388.7 310 62.9
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 8.1e-106 387.9 266 65.0
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 1.1e-105 387.5 300 65.7
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 1.1e-105 387.5 315 61.0
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 1.1e-105 387.5 291 67.7
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 3.1e-105 386.0 290 67.2
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 5.2e-105 385.2 293 66.2
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 2.6e-104 382.9 239 74.5
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 3.4e-104 382.5 277 68.2
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.9e-102 376.7 288 63.2
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 7.1e-102 374.8 300 64.0
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 1.3e-100 370.5 265 63.8
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 1.3e-100 370.5 325 56.9
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 1.7e-100 370.2 302 65.9
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 1.9e-99 366.7 313 61.0
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 1.9e-99 366.7 302 62.6
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 1.8e-97 360.1 209 79.9
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 4.9e-95 352.1 371 51.2
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 3.2e-94 349.4 316 58.5
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 9.2e-94 347.8 210 79.5
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 5.1e-92 342.0 273 59.7
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 8.6e-92 341.3 206 76.7
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 2.5e-91 339.7 289 63.0
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 1.6e-90 337.0 292 61.0
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 4.0e-89 332.4 239 63.2
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 7.6e-88 328.2 273 63.7
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.7e-87 327.0 239 63.2
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 2.7e-85 319.7 274 62.4
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 8.1e-82 308.1 287 54.0
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 1.4e-81 307.4 229 61.6
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 6.4e-79 298.5 312 51.6
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 3.0e-76 289.7 236 56.4
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 1.6e-69 267.3 210 65.2
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 8.7e-68 261.5 224 61.6
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 2.9e-63 246.5 190 59.5
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 4.2e-62 242.7 225 59.1
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 1.3e-60 237.7 166 69.3
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 6.7e-60 235.3 216 53.2
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 7.2e-54 215.3 183 56.8
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 1.6e-53 214.2 232 51.7
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 1.9e-51 207.2 220 47.7
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 5.5e-46 189.1 175 57.1
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 3.0e-44 183.3 134 66.4
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.8e-41 174.1 219 42.0
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.9e-40 169.1 219 41.1
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.0e-39 168.3 219 41.6
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 1.1e-38 164.9 100 74.0
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 5.5e-38 162.5 112 66.1
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 1.2e-37 161.4 85 88.2
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.2e-37 161.4 199 43.2
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 1.4e-33 147.9 98 71.4
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.2e-32 144.8 199 39.2
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.0e-31 141.7 176 43.8
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 1.1e-30 138.3 97 74.2
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.2e-28 129.4 199 35.7
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 3.3e-27 126.7 77 72.7
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.4e-25 121.3 210 32.4
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.8e-25 120.9 199 35.2
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.1e-25 120.2 187 34.8
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 9.1e-25 118.6 138 48.6
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 1.6e-24 117.9 84 63.1
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 1.7e-23 114.4 164 42.7
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.7e-23 114.4 199 31.7
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.0e-20 103.2 219 28.8
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 4.5e-16 89.7 180 31.1
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 7.2e-14 82.4 199 28.6
AUR62002800 Chenopodium quinoa HOM05D004663 ORTHO05D006325 1.4e-09 68.2 34 85.3
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 9.2e-09 65.5 104 34.6
Medtr4g074270 Medicago truncatula HOM05D004663 ORTHO05D006325 1.5e-06 58.2 67 43.3
Pp3c4_1950 Physcomitrium patens HOM05D004663 ORTHO05D318537 3.3e-06 57.0 61 45.9
Medtr3g063510 Medicago truncatula HOM05D004663 ORTHO05D006325 7.3e-06 55.8 57 49.1


User provided reference genes

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