Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 2453.7 1317 100.0
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 1838.9 1317 72.8
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1835.5 1317 73.8
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1827.8 1303 73.7
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1813.5 1317 72.4
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1804.6 1317 72.3
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1801.6 1317 72.1
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1780.8 1317 70.7
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1772.7 1325 70.9
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1753.0 1317 70.9
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1752.6 1321 71.5
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1750.7 1317 70.1
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1750.3 1317 70.4
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1745.7 1317 70.5
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1736.5 1317 69.3
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1734.2 1317 69.4
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1721.8 1317 69.2
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1716.8 1317 69.8
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1713.7 1317 68.9
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1708.0 1317 69.0
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1707.2 1317 68.5
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1700.6 1317 67.5
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1692.6 1317 67.9
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1687.5 1317 68.6
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1686.8 1365 67.0
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1684.1 1317 67.4
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1680.6 1317 67.0
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1679.8 1318 67.4
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1677.9 1436 64.1
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1676.8 1317 67.7
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1674.1 1549 60.7
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1671.4 1317 68.1
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1671.0 1317 67.0
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1655.6 1317 66.7
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1654.8 1317 66.3
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1651.7 1303 68.3
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1646.3 1317 66.6
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1643.2 1317 67.1
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1643.2 1317 65.6
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1631.7 1317 66.0
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1630.2 1317 65.8
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1628.2 1317 66.2
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1627.8 1317 66.1
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1619.4 1343 67.1
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1600.5 1370 63.7
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1595.5 1317 65.0
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1594.3 1318 64.9
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1589.3 1303 64.9
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1582.4 1317 64.6
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1578.9 1340 64.0
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1578.5 1317 64.0
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1577.8 1317 65.6
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1577.8 1318 65.4
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1577.8 1261 66.5
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1573.1 1317 64.4
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1571.2 1332 64.1
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1570.8 1332 64.1
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1570.1 1359 63.1
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1559.7 1317 64.8
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1552.3 1337 63.4
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1546.9 1210 67.9
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1542.3 1210 67.3
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1536.9 1318 63.7
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1531.5 1317 63.2
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1528.8 1318 63.3
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1528.5 1318 63.3
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1526.9 1401 61.1
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1518.4 1317 61.9
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1514.6 1303 61.9
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1505.0 1254 64.7
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1505.0 1317 61.7
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1494.6 1303 62.7
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1488.4 1317 60.4
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1484.5 1317 60.9
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1463.0 1370 60.1
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1297.3 1317 53.8
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 0.0e+00 1175.6 1322 50.1
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 0.0e+00 1136.3 1062 57.6
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 0.0e+00 1131.3 1317 49.2
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 2.5e-304 1049.3 1316 48.3
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 3.7e-300 1035.4 759 74.0
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 4.4e-293 1011.9 1025 56.0
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 2.8e-287 992.6 900 61.2
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 3.5e-282 975.7 1254 47.3
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 4.8e-279 965.3 1059 51.7
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 2.4e-270 936.4 743 66.5
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 5.8e-269 931.8 761 63.9
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 5.5e-267 925.2 669 72.6
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 5.3e-262 908.7 888 55.7
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 2.1e-258 896.7 1102 48.8
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 9.0e-254 881.3 767 62.1
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 1.0e-244 851.3 631 69.6
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 2.9e-244 849.7 631 69.6
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.1e-232 811.2 558 76.2
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 5.7e-232 808.9 728 60.0
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 2.7e-226 790.0 790 57.0
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 5.7e-224 782.3 631 67.0
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 1.4e-217 761.1 724 58.6
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 3.4e-216 756.5 1265 38.7
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 9.8e-208 728.4 594 65.8
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 9.8e-208 728.4 594 65.8
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 9.2e-198 695.3 749 53.9
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 1.7e-191 674.5 593 62.2
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 1.5e-168 598.2 1370 32.8
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 7.9e-165 585.9 526 61.2
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 1.6e-154 551.6 350 82.6
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 6.5e-143 513.1 350 76.0
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 3.6e-141 507.3 436 64.0
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 9.7e-139 499.2 1343 29.4
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 3.1e-137 494.2 1390 29.6
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.5e-136 491.9 432 62.7
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 1.5e-136 491.9 294 86.7
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 1.1e-131 475.7 457 57.5
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 3.7e-122 444.1 1351 28.4
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.0e-119 436.0 222 96.8
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 3.6e-117 427.6 244 89.3
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 1.3e-114 419.1 264 82.6
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 2.2e-111 408.3 224 89.7
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 3.4e-99 367.9 853 34.2
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 7.5e-99 366.7 394 52.5
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 9.8e-99 366.3 322 61.8
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.9e-95 354.8 408 51.2
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 2.1e-93 348.6 187 93.0
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 7.0e-89 333.6 223 78.0
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 8.6e-71 273.5 226 62.4
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 3.0e-63 248.4 126 94.4
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 2.5e-54 218.8 140 82.9
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 2.0e-51 209.1 139 82.0
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 2.5e-46 192.2 170 60.6
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 2.8e-45 188.7 167 61.7
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 6.2e-37 161.0 87 93.1
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 6.9e-36 157.5 106 79.2
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 1.4e-33 149.8 71 97.2
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 6.7e-31 141.0 114 63.2
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 1.3e-29 136.7 141 56.7
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 3.7e-29 135.2 165 47.9
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 3.3e-22 112.1 100 62.0
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 1.3e-21 110.2 64 85.9
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 8.2e-21 107.5 64 81.2
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 1.4e-20 106.7 106 59.4
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 6.5e-18 97.8 141 40.4
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 1.4e-15 90.1 90 55.6
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 3.7e-13 82.0 77 57.1
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 4.8e-13 81.6 77 59.7
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 4.1e-12 78.6 169 33.7
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 8.5e-10 70.9 63 65.1
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 2.1e-08 66.2 61 65.6
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 2.7e-08 65.9 56 69.6
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 8.0e-08 64.3 70 45.7
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 1.8e-07 63.2 140 31.4
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 2.0e-06 59.7 33 87.9


User provided reference genes

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