Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00003085 Prasinoderma coloniale HOM05D001724 ORTHO05D002973 0.0e+00 1120.1 597 100.0
Pp3c3_29310 Physcomitrium patens HOM05D001724 ORTHO05D002973 1.8e-47 194.9 538 29.0
Cre02.g095071 Chlamydomonas reinhardtii HOM05D001724 ORTHO05D002973 7.2e-33 146.4 505 30.5
SMO266G0093 Selaginella moellendorffii HOM05D001724 ORTHO05D002973 1.3e-21 109.0 453 27.4
SMO117G0265 Selaginella moellendorffii HOM05D001724 ORTHO05D002973 1.2e-19 102.4 445 24.9
Gohir.D01G062100 Gossypium hirsutum HOM05D001724 ORTHO05D002973 6.6e-18 96.7 457 26.0
Gorai.002G100700 Gossypium raimondii HOM05D001724 ORTHO05D002973 6.6e-18 96.7 457 26.0
Gohir.A01G091900 Gossypium hirsutum HOM05D001724 ORTHO05D002973 3.3e-17 94.4 457 25.8
Nn3g20983 Nelumbo nucifera HOM05D001724 ORTHO05D002973 3.3e-17 94.4 469 26.0
C06p10790 Brassica napus HOM05D001724 ORTHO05D002973 4.2e-17 94.0 445 25.4
BolC6t36163H Brassica oleracea HOM05D001724 ORTHO05D002973 4.2e-17 94.0 448 25.2
BcaC08g43659 Brassica carinata HOM05D001724 ORTHO05D002973 7.2e-17 93.2 448 25.2
Thecc.07G012700 Theobroma cacao HOM05D001724 ORTHO05D002973 1.2e-16 92.4 453 25.6
Sp1g41470 Schrenkiella parvula HOM05D001724 ORTHO05D002973 2.8e-16 91.3 443 24.8
Pp3c6_1870 Physcomitrium patens HOM05D001724 ORTHO05D002973 3.6e-16 90.9 502 23.1
BraSC56t46398Z Brassica rapa HOM05D001724 ORTHO05D002973 6.1e-16 90.1 444 23.9
AT1G55870 Arabidopsis thaliana HOM05D001724 ORTHO05D002973 1.8e-15 88.6 447 24.6
BcaNung06014 Brassica carinata HOM05D001724 ORTHO05D002973 2.3e-15 88.2 453 24.5
Lsat_1_v5_gn_7_114340 Lactuca sativa HOM05D001724 ORTHO05D002973 3.0e-15 87.8 461 23.6
BcaB02g10794 Brassica carinata HOM05D001724 ORTHO05D002973 4.0e-15 87.4 442 24.4
Aa31LG10G320 Aethionema arabicum HOM05D001724 ORTHO05D002973 6.8e-15 86.7 450 25.8
THA.LOC104822731 Tarenaya hassleriana HOM05D001724 ORTHO05D002973 6.8e-15 86.7 455 24.2
TAR629G2285 Trochodendron aralioides HOM05D001724 ORTHO05D002973 6.8e-15 86.7 457 26.3
CARHR045570 Cardamine hirsuta HOM05D001724 ORTHO05D002973 8.9e-15 86.3 444 25.2
COL.COLO4_09841 Corchorus olitorius HOM05D001724 ORTHO05D002973 8.9e-15 86.3 455 25.1
Lj6g0025052 Lotus japonicus HOM05D001724 ORTHO05D002973 8.9e-15 86.3 447 24.2
Thhalv10011283m.g Eutrema salsugineum HOM05D001724 ORTHO05D002973 1.2e-14 85.9 443 24.2
HanXRQChr11g0334101 Helianthus annuus HOM05D001724 ORTHO05D002973 1.5e-14 85.5 458 26.0
Rhsim06G0230400 Rhododendron simsii HOM05D001724 ORTHO05D002973 2.0e-14 85.1 456 26.5
EL10Ac4g07558 Beta vulgaris HOM05D001724 ORTHO05D002973 2.6e-14 84.7 448 25.4
Migut.H01753 Erythranthe guttata HOM05D001724 ORTHO05D002973 2.6e-14 84.7 460 26.3
AL1G64000 Arabidopsis lyrata HOM05D001724 ORTHO05D002973 4.4e-14 84.0 444 25.0
arahy.Tifrunner.gnm1.ann1.I0JGGQ Arachis hypogaea HOM05D001724 ORTHO05D002973 5.7e-14 83.6 451 24.8
DCAR_017078 Daucus carota HOM05D001724 ORTHO05D002973 5.7e-14 83.6 466 25.8
GSVIVG01014694001 Vitis vinifera HOM05D001724 ORTHO05D002973 7.5e-14 83.2 450 23.6
Actinidia04999 Actinidia chinensis HOM05D001724 ORTHO05D002973 1.7e-13 82.0 463 25.3
Atru.chr2.3696 Acer truncatum HOM05D001724 ORTHO05D002973 2.2e-13 81.6 453 26.0
Migut.N00669 Erythranthe guttata HOM05D001724 ORTHO05D002973 2.2e-13 81.6 340 25.3
Sopen07g033830 Solanum pennellii HOM05D001724 ORTHO05D002973 2.8e-13 81.3 455 24.4
Glyma.18G076100 Glycine max HOM05D001724 ORTHO05D002973 4.9e-13 80.5 446 24.2
TPR.G24133 Trifolium pratense HOM05D001724 ORTHO05D002973 6.3e-13 80.1 459 24.6
CANSAT11G0804 Cannabis sativa HOM05D001724 ORTHO05D002973 1.1e-12 79.3 159 32.1
ClCG10G004430 Citrullus lanatus HOM05D001724 ORTHO05D002973 1.1e-12 79.3 459 25.7
Cfa021604 Carpinus fangiana HOM05D001724 ORTHO05D002973 1.8e-12 78.6 359 25.3
FvH4_3g42970 Fragaria vesca HOM05D001724 ORTHO05D002973 1.8e-12 78.6 464 24.1
Ca_26568_v3 Cicer arietinum L. HOM05D001724 ORTHO05D002973 2.4e-12 78.2 462 24.5
MD11G1030900 Malus domestica HOM05D001724 ORTHO05D002973 2.4e-12 78.2 475 24.2
RcHm_v2.0_Chr5g0077021 Rosa chinensis HOM05D001724 ORTHO05D002973 3.2e-12 77.8 465 25.6
Carub.0001s4445 Capsella rubella HOM05D001724 ORTHO05D002973 4.1e-12 77.4 184 29.3
FAN25G1954 Fragaria x ananassa HOM05D001724 ORTHO05D002973 4.1e-12 77.4 464 24.1
MELO3C014116.2 Cucumis melo HOM05D001724 ORTHO05D002973 5.4e-12 77.0 147 36.1
PSO210G1056 Papaver somniferum HOM05D001724 ORTHO05D002973 5.4e-12 77.0 448 24.6
CsaV3_3G004220 Cucumis sativus L. HOM05D001724 ORTHO05D002973 7.0e-12 76.6 147 34.7
Sabra16G0241500 Salix brachista HOM05D001724 ORTHO05D002973 9.2e-12 76.3 183 32.2
MSTRG.13022 Avicennia marina HOM05D001724 ORTHO05D002973 1.2e-11 75.9 454 25.6
Nitab4.5_0002736g0010 Nicotiana tabacum HOM05D001724 ORTHO05D002973 1.2e-11 75.9 166 30.7
Nitab4.5_0007415g0040 Nicotiana tabacum HOM05D001724 ORTHO05D002973 1.6e-11 75.5 166 30.1
QL08p003988 Quercus lobata HOM05D001724 ORTHO05D002973 2.0e-11 75.1 357 25.2
Glyma.08G330300 Glycine max HOM05D001724 ORTHO05D002973 2.7e-11 74.7 151 33.1
Prupe.6G024200 Prunus persica HOM05D001724 ORTHO05D002973 2.7e-11 74.7 462 25.1
HPP92_018203 Vanilla planifolia HOM05D001724 ORTHO05D002973 2.7e-11 74.7 452 23.9
arahy.Tifrunner.gnm1.ann1.IH99E4 Arachis hypogaea HOM05D001724 ORTHO05D002973 3.5e-11 74.3 456 23.0
SHI10232 Sapria himalayana HOM05D001724 ORTHO05D002973 3.5e-11 74.3 350 25.4
Sed0006389 Sechium edule HOM05D001724 ORTHO05D002973 3.5e-11 74.3 155 34.2
PGSC0003DMG400022169 Solanum tuberosum HOM05D001724 ORTHO05D002973 3.5e-11 74.3 168 32.1
Lalb_Chr15g0082171 Lupinus albus HOM05D001724 ORTHO05D002973 4.5e-11 73.9 453 24.3
Dinv10340 Davidia involucrata HOM05D001724 ORTHO05D002973 5.9e-11 73.6 445 23.6
TWI39G0509 Tripterygium wilfordii HOM05D001724 ORTHO05D002973 5.9e-11 73.6 140 34.3
Cfa020185 Carpinus fangiana HOM05D001724 ORTHO05D007284 7.8e-11 73.2 139 33.8
Eucgr.H00715 Eucalyptus grandis HOM05D001724 ORTHO05D002973 7.8e-11 73.2 374 24.3
Solyc07g065620.4 Solanum lycopersicum HOM05D001724 ORTHO05D002973 7.8e-11 73.2 168 31.5
CAN.G623.15 Capsicum annuum HOM05D001724 ORTHO05D002973 1.7e-10 72.0 167 31.1
CDE10G0672 Ceratophyllum demersum HOM05D001724 ORTHO05D002973 1.7e-10 72.0 195 29.2
QL08p003981 Quercus lobata HOM05D001724 ORTHO05D002973 1.7e-10 72.0 188 30.9
PGR083G1098 Punica granatum HOM05D001724 ORTHO05D002973 2.9e-10 71.2 184 33.2
Peaxi162Scf00139g01315 Petunia axillaris HOM05D001724 ORTHO05D002973 3.9e-10 70.9 187 29.9
Cc05_g14990 Coffea canephora HOM05D001724 ORTHO05D002973 5.0e-10 70.5 201 31.3
Manes.03G141900 Manihot esculenta HOM05D001724 ORTHO05D002973 5.0e-10 70.5 186 32.8
Potri.001G368401 Populus trichocarpa HOM05D001724 ORTHO05D002973 5.0e-10 70.5 183 30.6
VMungo0540G2248 Vigna mungo HOM05D001724 ORTHO05D002973 6.6e-10 70.1 460 23.3
MD10G1150600 Malus domestica HOM05D001724 ORTHO05D002973 1.5e-09 68.9 350 26.0
Phvul.006G058000 Phaseolus vulgaris HOM05D001724 ORTHO05D002973 1.5e-09 68.9 431 24.8
Hund20648 Selenicereus undatus HOM05D001724 ORTHO05D002973 1.5e-09 68.9 147 32.7
AagrBONN_evm.TU.Sc2ySwM_117.20 Anthoceros agrestis HOM05D000506 ORTHO05D000369 1.9e-09 68.6 238 26.5
Cre02.g090276 Chlamydomonas reinhardtii HOM05D001724 ORTHO05D002973 2.5e-09 68.2 217 27.6
Eucgr.F02044 Eucalyptus grandis HOM05D001724 ORTHO05D002973 2.5e-09 68.2 197 28.9
MD05G1157900 Malus domestica HOM05D001724 ORTHO05D002973 3.3e-09 67.8 354 26.0
MD03G1026900 Malus domestica HOM05D001724 ORTHO05D002973 4.3e-09 67.4 150 31.3
Ciclev10007611m.g Citrus clementina HOM05D001724 ORTHO05D002973 7.3e-09 66.6 138 33.3
ECA236G0853 Erigeron canadensis HOM05D001724 ORTHO05D002973 1.6e-08 65.5 435 23.7
CBR_g84870 Chara braunii HOM05D001724 ORTHO05D002973 2.8e-08 64.7 123 27.6
MSTRG.12750 Avicennia marina HOM05D001724 ORTHO05D002973 3.6e-08 64.3 454 21.6
Manes.13G055100 Manihot esculenta HOM05D001724 ORTHO05D002973 3.6e-08 64.3 376 22.6
ATR0751G261 Amborella trichopoda HOM05D001724 ORTHO05D002973 4.7e-08 63.9 363 23.7
Psat3g151640 Pisum sativum HOM05D001724 ORTHO05D002973 4.7e-08 63.9 330 22.1
Aqoxy1G04266 Aquilegia oxysepala HOM05D001724 ORTHO05D002973 6.1e-08 63.5 449 21.8
COL.COLO4_36365 Corchorus olitorius HOM05D001724 ORTHO05D002973 6.1e-08 63.5 373 24.7
CSS0011372 Camellia sinensis var. sinensis HOM05D001724 ORTHO05D002973 1.0e-07 62.8 482 24.1
Sabra14G0135700 Salix brachista HOM05D001724 ORTHO05D002973 1.4e-07 62.4 347 23.1
SHI26519 Sapria himalayana HOM05D001724 ORTHO05D000023 1.8e-07 62.0 145 29.7
AUR62036464 Chenopodium quinoa HOM05D001724 ORTHO05D002973 4.0e-07 60.8 412 22.6
Os04g0467400 Oryza sativa ssp. japonica HOM05D001724 ORTHO05D002973 5.2e-07 60.5 110 36.4
TPR.G26836 Trifolium pratense HOM05D001724 ORTHO05D002973 5.2e-07 60.5 347 20.5
AUR62017111 Chenopodium quinoa HOM05D001724 ORTHO05D002973 1.2e-06 59.3 419 23.6
Oeu057820.1 Olea europaea HOM05D001724 ORTHO05D002973 1.5e-06 58.9 353 23.5
vmacro02823 Vaccinium macrocarpon HOM05D001724 ORTHO05D002973 1.5e-06 58.9 356 22.5
Oeu049405.1 Olea europaea HOM05D001724 ORTHO05D002973 2.6e-06 58.2 84 44.0
THA.LOC104808814 Tarenaya hassleriana HOM05D001724 ORTHO05D002973 5.8e-06 57.0 340 23.2
Cc08_g03940 Coffea canephora HOM05D001724 ORTHO05D002973 9.8e-06 56.2 347 19.9
Hma1.2p1_1094F.1_g256485 Hydrangea macrophylla HOM05D001724 ORTHO05D002973 9.8e-06 56.2 116 37.9
Lalb_Chr19g0126201 Lupinus albus HOM05D001724 ORTHO05D002973 9.8e-06 56.2 339 21.5
Mapoly0076s0056 Marchantia polymorpha HOM05D001724 ORTHO05D002973 9.8e-06 56.2 205 27.8


User provided reference genes

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