Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402025354 Solanum tuberosum HOM05D000228 ORTHO05D001545 4.6e-28 127.1 61 100.0
Solyc11g072730.2 Solanum lycopersicum HOM05D000228 ORTHO05D001545 1.8e-24 115.2 55 100.0
Sopen11g030400 Solanum pennellii HOM05D000228 ORTHO05D001545 1.8e-24 115.2 55 100.0
Nitab4.5_0001885g0040 Nicotiana tabacum HOM05D000228 ORTHO05D001545 1.5e-23 112.1 59 91.5
CAN.G1190.18 Capsicum annuum HOM05D000228 ORTHO05D001545 1.0e-22 109.4 54 96.3
Nitab4.5_0001885g0030 Nicotiana tabacum HOM05D000228 ORTHO05D001545 2.9e-22 107.8 54 94.4
Peaxi162Scf00616g00511 Petunia axillaris HOM05D000228 ORTHO05D001545 2.9e-22 107.8 54 92.6
Nitab4.5_0004839g0020 Nicotiana tabacum HOM05D000228 ORTHO05D001545 3.8e-22 107.5 54 94.4
Cc01_g11950 Coffea canephora HOM05D000228 ORTHO05D001545 1.9e-21 105.1 55 89.1
CAN.G84.13 Capsicum annuum HOM05D000228 ORTHO05D001545 2.5e-21 104.8 54 92.6
Oeu041542.1 Olea europaea HOM05D000228 ORTHO05D001545 2.5e-21 104.8 55 89.1
CSS0025979 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D001545 3.2e-21 104.4 55 89.1
Dinv27602 Davidia involucrata HOM05D000228 ORTHO05D001545 3.2e-21 104.4 55 89.1
Lj3C239T4 Lonicera japonica HOM05D000228 ORTHO05D001545 4.2e-21 104.0 55 87.3
PSO384G5084 Papaver somniferum HOM05D000228 ORTHO05D001545 7.2e-21 103.2 55 87.3
PSO699G0040 Papaver somniferum HOM05D000228 ORTHO05D001545 7.2e-21 103.2 55 87.3
CSS0035598 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D001545 1.2e-20 102.4 54 88.9
Sc19g0005360 Simmondsia chinensis HOM05D000228 ORTHO05D001545 1.6e-20 102.1 55 85.5
vmacro12980 Vaccinium macrocarpon HOM05D000228 ORTHO05D001545 1.6e-20 102.1 55 87.3
Actinidia03765 Actinidia chinensis HOM05D000228 ORTHO05D001545 2.1e-20 101.7 55 85.5
ClCG03G002130 Citrullus lanatus HOM05D000228 ORTHO05D001545 2.7e-20 101.3 56 82.1
Nn2g12369 Nelumbo nucifera HOM05D000228 ORTHO05D001545 2.7e-20 101.3 56 83.9
EL10Ac3g06609 Beta vulgaris HOM05D000228 ORTHO05D001545 3.6e-20 100.9 60 75.0
TAR623G0006 Trochodendron aralioides HOM05D000228 ORTHO05D001545 3.6e-20 100.9 55 85.5
DCAR_018871 Daucus carota HOM05D000228 ORTHO05D001545 4.6e-20 100.5 55 87.3
Rhsim01G0223300 Rhododendron simsii HOM05D000228 ORTHO05D001545 4.6e-20 100.5 55 85.5
MELO3C026854.2 Cucumis melo HOM05D000228 ORTHO05D001545 7.9e-20 99.8 55 83.6
CsaV3_1G012790 Cucumis sativus L. HOM05D000228 ORTHO05D001545 7.9e-20 99.8 55 83.6
MSTRG.17722 Avicennia marina HOM05D000228 ORTHO05D001545 1.0e-19 99.4 54 87.0
Pp3c17_4860 Physcomitrium patens HOM05D000228 ORTHO05D001545 1.0e-19 99.4 55 81.8
CBR_g21008 Chara braunii HOM05D000228 ORTHO05D001545 1.3e-19 99.0 55 80.0
SGA_v2.0_scaffold110G31200 Striga asiatica HOM05D000228 ORTHO05D001545 1.3e-19 99.0 54 81.5
Atru.chr3.3760 Acer truncatum HOM05D000228 ORTHO05D001545 1.8e-19 98.6 55 83.6
Ah.04g153590 Amaranthus hybridus HOM05D000228 ORTHO05D001545 1.8e-19 98.6 55 80.0
Migut.A00876 Erythranthe guttata HOM05D000228 ORTHO05D001545 2.3e-19 98.2 54 85.2
Sed0007851 Sechium edule HOM05D000228 ORTHO05D001545 2.3e-19 98.2 55 81.8
Cfa011405 Carpinus fangiana HOM05D000228 ORTHO05D001545 3.0e-19 97.8 55 81.8
Ciclev10027681m.g Citrus clementina HOM05D000228 ORTHO05D001545 3.0e-19 97.8 55 81.8
Haze_23976 Corylus avellana HOM05D000228 ORTHO05D001545 3.0e-19 97.8 55 81.8
Nitab4.5_0004015g0070 Nicotiana tabacum HOM05D000228 ORTHO05D001545 3.0e-19 97.8 52 90.4
Mapoly0051s0017 Marchantia polymorpha HOM05D000228 ORTHO05D001545 3.9e-19 97.4 55 78.2
SEGI_11035 Sequoiadendron giganteum HOM05D000228 ORTHO05D001545 3.9e-19 97.4 55 81.8
SEGI_11307 Sequoiadendron giganteum HOM05D000228 ORTHO05D001545 3.9e-19 97.4 55 81.8
CDE02G3052 Ceratophyllum demersum HOM05D000228 ORTHO05D001545 5.1e-19 97.1 55 80.0
ECA247G0560 Erigeron canadensis HOM05D000228 ORTHO05D001545 6.7e-19 96.7 55 83.6
Gohir.A03G036100 Gossypium hirsutum HOM05D000228 ORTHO05D001545 6.7e-19 96.7 55 81.8
Gohir.D03G132200 Gossypium hirsutum HOM05D000228 ORTHO05D001545 6.7e-19 96.7 55 81.8
Gorai.003G139100 Gossypium raimondii HOM05D000228 ORTHO05D001545 6.7e-19 96.7 55 81.8
GSVIVG01025079001 Vitis vinifera HOM05D000228 ORTHO05D001545 6.7e-19 96.7 55 81.8
AagrBONN_evm.TU.Sc2ySwM_362.2196 Anthoceros agrestis HOM05D000228 ORTHO05D001545 8.7e-19 96.3 55 78.2
CANSAT56G4454 Cannabis sativa HOM05D000228 ORTHO05D001545 8.7e-19 96.3 55 81.8
AUR62006512 Chenopodium quinoa HOM05D000228 ORTHO05D001545 1.5e-18 95.5 55 76.4
AUR62025018 Chenopodium quinoa HOM05D000228 ORTHO05D001545 1.5e-18 95.5 55 76.4
CiPaw.14G074800 Carya illinoinensis HOM05D000228 ORTHO05D001545 1.9e-18 95.1 55 80.0
MCO05G255 Micromonas commoda HOM05D000228 ORTHO05D001545 1.9e-18 95.1 55 78.2
Peaxi162Scf00616g00621 Petunia axillaris HOM05D000228 ORTHO05D001545 1.9e-18 95.1 54 79.6
Thecc.03G012000 Theobroma cacao HOM05D000228 ORTHO05D001545 1.9e-18 95.1 55 80.0
Manes.17G000400 Manihot esculenta HOM05D000228 ORTHO05D001545 2.5e-18 94.7 55 78.2
QL06p007429 Quercus lobata HOM05D000228 ORTHO05D001545 2.5e-18 94.7 56 80.4
Sabra16G0221600 Salix brachista HOM05D000228 ORTHO05D001545 3.3e-18 94.4 56 76.8
HanXRQChr04g0106851 Helianthus annuus HOM05D000228 ORTHO05D001545 4.3e-18 94.0 55 80.0
Potri.001G341900 Populus trichocarpa HOM05D000228 ORTHO05D001545 4.3e-18 94.0 55 78.2
Migut.C00025 Erythranthe guttata HOM05D000228 ORTHO05D001545 5.7e-18 93.6 54 79.6
TWI75G1460 Tripterygium wilfordii HOM05D000228 ORTHO05D001545 5.7e-18 93.6 55 78.2
Duzib150G0751 Durio zibethinus HOM05D000228 ORTHO05D001545 7.4e-18 93.2 55 78.2
PSO017G3640 Papaver somniferum HOM05D000228 ORTHO05D001545 7.4e-18 93.2 55 78.2
Os04g0492300 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D001545 9.7e-18 92.8 55 76.4
Lalb_Chr01g0003921 Lupinus albus HOM05D000228 ORTHO05D001545 1.3e-17 92.4 55 76.4
Zm00001eb078830 Zea mays HOM05D000228 ORTHO05D001545 1.6e-17 92.0 55 76.4
Aqoxy4G03122 Aquilegia oxysepala HOM05D000228 ORTHO05D001545 2.2e-17 91.7 55 78.2
Lsat_1_v5_gn_9_21100 Lactuca sativa HOM05D000228 ORTHO05D001545 2.8e-17 91.3 51 84.3
HPP92_005962 Vanilla planifolia HOM05D000228 ORTHO05D001545 6.3e-17 90.1 55 72.7
COL.COLO4_18403 Corchorus olitorius HOM05D000228 ORTHO05D001545 1.1e-16 89.4 54 77.8
EL10Ac1g02243 Beta vulgaris HOM05D000228 ORTHO05D001545 1.4e-16 89.0 60 73.3
FvH4_3g34290 Fragaria vesca HOM05D000228 ORTHO05D001545 1.8e-16 88.6 55 78.2
FAN11G3166 Fragaria x ananassa HOM05D000228 ORTHO05D001545 1.8e-16 88.6 55 78.2
FAN16G3688 Fragaria x ananassa HOM05D000228 ORTHO05D001545 1.8e-16 88.6 55 78.2
FAN21G2820 Fragaria x ananassa HOM05D000228 ORTHO05D001545 1.8e-16 88.6 55 78.2
Cpa.g.sc7.208 Carica papaya HOM05D000228 ORTHO05D001545 2.4e-16 88.2 55 74.5
MD03G1106800 Malus domestica HOM05D000228 ORTHO05D001545 2.4e-16 88.2 54 81.5
SHI43201 Sapria himalayana HOM05D000228 ORTHO05D001545 5.3e-16 87.0 52 75.0
RcHm_v2.0_Chr5g0061861 Rosa chinensis HOM05D000228 ORTHO05D001545 6.9e-16 86.7 55 76.4
ECA233G1127 Erigeron canadensis HOM05D000228 ORTHO05D001545 1.2e-15 85.9 55 70.9
Eucgr.J02108 Eucalyptus grandis HOM05D000228 ORTHO05D001545 1.2e-15 85.9 55 70.9
Prupe.6G089600 Prunus persica HOM05D000228 ORTHO05D001545 1.2e-15 85.9 59 71.2
HanXRQChr08g0230641 Helianthus annuus HOM05D000228 ORTHO05D001545 2.6e-15 84.7 55 72.7
COL.COLO4_14804 Corchorus olitorius HOM05D000228 ORTHO05D001545 3.4e-15 84.3 55 69.1
PGR119G1503 Punica granatum HOM05D000228 ORTHO05D001545 3.4e-15 84.3 55 70.9
Aqoxy4G03124 Aquilegia oxysepala HOM05D000228 ORTHO05D001545 4.5e-15 84.0 55 72.7
Lj1g0011731 Lotus japonicus HOM05D000228 ORTHO05D001545 4.5e-15 84.0 55 70.9
Lsat_1_v5_gn_2_6980 Lactuca sativa HOM05D000228 ORTHO05D001545 5.9e-15 83.6 55 72.7
Atru.chr3.3762 Acer truncatum HOM05D000228 ORTHO05D001545 1.3e-14 82.4 55 70.9
arahy.Tifrunner.gnm1.ann1.E1FMMY Arachis hypogaea HOM05D000228 ORTHO05D001545 1.3e-14 82.4 55 69.1
arahy.Tifrunner.gnm1.ann1.ZV3AQA Arachis hypogaea HOM05D000228 ORTHO05D001545 1.3e-14 82.4 55 69.1
Phvul.011G070100 Phaseolus vulgaris HOM05D000228 ORTHO05D001545 2.2e-14 81.6 55 72.7
THA.LOC104810826 Tarenaya hassleriana HOM05D000228 ORTHO05D001545 2.2e-14 81.6 55 69.1
CARHR273660 Cardamine hirsuta HOM05D000228 ORTHO05D001545 2.9e-14 81.3 55 67.3
Thhalv10012446m.g Eutrema salsugineum HOM05D000228 ORTHO05D001545 2.9e-14 81.3 55 67.3
AL8G36630 Arabidopsis lyrata HOM05D000228 ORTHO05D001545 3.8e-14 80.9 55 65.5
Carub.0008s2074 Capsella rubella HOM05D000228 ORTHO05D001545 3.8e-14 80.9 55 65.5
arahy.Tifrunner.gnm1.ann1.NH5KQA Arachis hypogaea HOM05D000228 ORTHO05D001545 5.0e-14 80.5 54 68.5
Sp6g21700 Schrenkiella parvula HOM05D000228 ORTHO05D001545 5.0e-14 80.5 55 65.5
VMungo1127G0038 Vigna mungo HOM05D000228 ORTHO05D001545 6.5e-14 80.1 55 70.9
AT5G60040 Arabidopsis thaliana HOM05D000228 ORTHO05D001545 8.5e-14 79.7 55 65.5
BcaB05g22610 Brassica carinata HOM05D000228 ORTHO05D001545 8.5e-14 79.7 55 63.6
A02p06630 Brassica napus HOM05D000228 ORTHO05D001545 8.5e-14 79.7 55 63.6
BolC2t07289H Brassica oleracea HOM05D000228 ORTHO05D001545 8.5e-14 79.7 55 63.6
BraA02t05745Z Brassica rapa HOM05D000228 ORTHO05D001545 8.5e-14 79.7 55 63.6
PRCOL_00001662 Prasinoderma coloniale HOM05D000228 ORTHO05D001545 8.5e-14 79.7 52 69.2
Ca_19216_v3 Cicer arietinum L. HOM05D000228 ORTHO05D001545 1.1e-13 79.3 55 65.5
Glyma.11G147317 Glycine max HOM05D000228 ORTHO05D001545 1.1e-13 79.3 55 70.9
RcHm_v2.0_Chr3g0469301 Rosa chinensis HOM05D000228 ORTHO05D001545 1.1e-13 79.3 53 73.6
Thecc.03G011900 Theobroma cacao HOM05D000228 ORTHO05D001545 1.1e-13 79.3 55 67.3
MD09G1157000 Malus domestica HOM05D000228 ORTHO05D001545 1.4e-13 79.0 57 59.6
ATR0594G163 Amborella trichopoda HOM05D000228 ORTHO05D001545 1.9e-13 78.6 55 65.5
Aa31LG1G12200 Aethionema arabicum HOM05D000228 ORTHO05D001545 3.2e-13 77.8 55 65.5
AUR62035701 Chenopodium quinoa HOM05D000228 ORTHO05D001545 3.2e-13 77.8 55 69.1
Cre03.g165750 Chlamydomonas reinhardtii HOM05D000228 ORTHO05D001545 4.2e-13 77.4 53 66.0
Aa31LG1G12170 Aethionema arabicum HOM05D000228 ORTHO05D001545 1.2e-12 75.9 55 63.6
FvH4_6g15630 Fragaria vesca HOM05D000228 ORTHO05D001545 1.2e-12 75.9 53 71.7
FAN14G3914 Fragaria x ananassa HOM05D000228 ORTHO05D001545 1.2e-12 75.9 53 71.7
Medtr4g061800 Medicago truncatula HOM05D000228 ORTHO05D001545 2.1e-12 75.1 55 61.8
vmacro14494 Vaccinium macrocarpon HOM05D005596 ORTHO05D001545 2.1e-12 75.1 42 81.0
Medtr4g061700 Medicago truncatula HOM05D000228 ORTHO05D001545 2.7e-12 74.7 55 61.8
TPR.G2993 Trifolium pratense HOM05D000228 ORTHO05D001545 2.7e-12 74.7 55 61.8
Cfa021868 Carpinus fangiana HOM05D000228 ORTHO05D001545 3.6e-12 74.3 48 70.8
Psat7g221400 Pisum sativum HOM05D000228 ORTHO05D001545 1.8e-11 72.0 55 58.2
FAN02G0259 Fragaria x ananassa HOM05D000228 ORTHO05D001545 6.7e-11 70.1 47 70.2
Haze_26119 Corylus avellana HOM05D000228 ORTHO05D001545 1.1e-10 69.3 52 63.5
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 1.5e-10 68.9 55 61.8
TPR.G8519 Trifolium pratense HOM05D000228 ORTHO05D001545 1.3e-09 65.9 52 57.7
Thecc.09G334100 Theobroma cacao HOM05D000228 ORTHO05D001545 1.3e-06 55.8 34 76.5


User provided reference genes

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