Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 4.8e-42 174.1 88 100.0
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 2.6e-40 168.3 88 96.6
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 3.2e-38 161.4 85 94.1
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 4.6e-37 157.5 84 92.9
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 3.0e-36 154.8 84 89.3
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 3.0e-36 154.8 77 100.0
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 2.5e-35 151.8 82 91.5
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 5.6e-35 150.6 82 89.0
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 7.4e-35 150.2 84 86.9
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 4.8e-34 147.5 83 88.0
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 1.4e-33 146.0 84 88.1
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 1.8e-33 145.6 83 85.5
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 3.1e-33 144.8 83 86.7
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 5.3e-33 144.1 80 87.5
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 6.9e-33 143.7 79 89.9
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 6.9e-33 143.7 82 86.6
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 1.2e-32 142.9 79 88.6
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 2.0e-32 142.1 83 86.7
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 2.6e-32 141.7 79 88.6
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 3.4e-32 141.4 79 87.3
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 5.8e-32 140.6 75 90.7
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 7.6e-32 140.2 79 87.3
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 7.6e-32 140.2 79 87.3
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 1.7e-31 139.0 79 87.3
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 1.7e-31 139.0 84 82.1
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 3.8e-31 137.9 84 81.0
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 8.4e-31 136.7 79 86.1
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 2.5e-30 135.2 83 80.7
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 2.5e-30 135.2 84 79.8
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 3.2e-30 134.8 82 80.5
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 4.2e-30 134.4 84 78.6
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 4.2e-30 134.4 82 81.7
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 7.1e-30 133.7 82 80.5
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 7.1e-30 133.7 82 80.5
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 7.1e-30 133.7 82 80.5
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 9.3e-30 133.3 79 83.5
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 9.3e-30 133.3 79 83.5
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 1.6e-29 132.5 79 83.5
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 2.1e-29 132.1 84 77.4
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 2.7e-29 131.7 82 79.3
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 3.5e-29 131.3 79 82.3
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 3.5e-29 131.3 79 82.3
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 4.6e-29 131.0 79 81.0
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 4.6e-29 131.0 82 78.0
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 4.6e-29 131.0 79 82.3
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 4.6e-29 131.0 79 81.0
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 4.6e-29 131.0 79 82.3
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 6.0e-29 130.6 79 81.0
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 6.0e-29 130.6 79 81.0
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 6.0e-29 130.6 79 81.0
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 7.9e-29 130.2 84 75.0
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 7.9e-29 130.2 79 82.3
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 7.9e-29 130.2 79 82.3
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 1.0e-28 129.8 79 81.0
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 1.0e-28 129.8 79 79.7
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 1.0e-28 129.8 79 81.0
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 1.0e-28 129.8 79 81.0
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 1.8e-28 129.0 79 79.7
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.8e-28 129.0 81 77.8
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 1.8e-28 129.0 84 76.2
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 2.3e-28 128.6 84 73.8
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 2.3e-28 128.6 80 78.8
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 3.0e-28 128.3 79 79.7
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 3.9e-28 127.9 79 79.7
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 3.9e-28 127.9 76 81.6
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 5.1e-28 127.5 79 79.7
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 5.1e-28 127.5 79 79.7
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 6.7e-28 127.1 79 78.5
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 6.7e-28 127.1 79 79.7
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 6.7e-28 127.1 79 78.5
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 6.7e-28 127.1 79 78.5
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 6.7e-28 127.1 79 78.5
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 6.7e-28 127.1 79 78.5
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 8.7e-28 126.7 79 78.5
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 8.7e-28 126.7 79 79.7
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 1.1e-27 126.3 81 77.8
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 1.5e-27 125.9 79 77.2
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.5e-27 125.9 79 77.2
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 1.9e-27 125.6 82 76.8
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 2.5e-27 125.2 79 77.2
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 2.5e-27 125.2 80 77.5
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 3.3e-27 124.8 81 76.5
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 7.4e-27 123.6 80 77.5
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 1.3e-26 122.9 80 76.2
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 1.3e-26 122.9 79 75.9
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 2.1e-26 122.1 75 78.7
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 2.8e-26 121.7 79 78.5
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 2.8e-26 121.7 79 73.4
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 8.2e-26 120.2 88 71.6
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 1.1e-25 119.8 80 77.5
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 1.1e-25 119.8 80 77.5
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 1.1e-25 119.8 75 76.0
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 1.1e-25 119.8 125 56.0
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 1.4e-25 119.4 81 71.6
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 1.4e-25 119.4 79 73.4
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 4.0e-25 117.9 80 73.8
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 1.2e-24 116.3 79 69.6
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 5.8e-24 114.0 104 60.6
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 5.8e-24 114.0 79 68.4
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 7.6e-24 113.6 79 70.9
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 7.6e-24 113.6 79 72.2
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 1.1e-22 109.8 79 69.6
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 9.3e-22 106.7 79 64.6
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 5.1e-20 100.9 63 76.2
CAN.G395.47 Capsicum annuum HOM05D005526 ORTHO05D006802 4.3e-19 97.8 48 97.9
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 1.4e-17 92.8 56 80.4
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 9.7e-11 70.1 70 55.7
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 8.2e-10 67.0 41 75.6
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 1.1e-09 66.6 54 66.7
COL.COLO4_12895 Corchorus olitorius HOM05D005526 ORTHO05D006802 3.2e-06 55.1 30 83.3


User provided reference genes

Program Settings