Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 1.6e-270 935.6 534 100.0
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 5.3e-261 904.0 534 89.0
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.7e-243 845.9 535 84.3
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 6.5e-243 844.0 535 84.7
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 2.8e-238 828.6 535 83.6
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 1.4e-234 816.2 481 88.8
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 1.5e-215 753.1 532 83.6
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 6.6e-203 711.1 530 78.3
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 2.0e-196 689.5 533 67.4
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 4.7e-193 678.3 535 69.7
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 1.1e-192 677.2 533 75.2
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 1.1e-192 677.2 537 66.5
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 6.8e-192 674.5 541 66.4
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 2.0e-191 672.9 533 66.0
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 2.2e-190 669.5 532 69.7
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 2.9e-190 669.1 530 68.1
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 5.6e-186 654.8 534 65.0
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 7.8e-180 634.4 529 64.8
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 5.1e-179 631.7 557 69.1
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 5.1e-179 631.7 530 62.3
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 8.6e-179 630.9 535 63.0
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 2.1e-177 626.3 556 63.8
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 2.8e-177 625.9 536 62.1
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 3.1e-176 622.5 535 69.7
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 1.2e-175 620.5 556 63.7
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 2.0e-175 619.8 530 64.0
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 1.3e-174 617.1 538 61.3
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 2.2e-174 616.3 528 69.7
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 2.9e-174 615.9 532 60.5
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 3.8e-174 615.5 527 69.4
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 3.8e-174 615.5 536 60.6
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 6.4e-174 614.8 525 69.3
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 2.4e-173 612.8 537 62.8
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 4.1e-173 612.1 535 60.9
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 7.1e-173 611.3 552 69.0
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 9.2e-173 610.9 530 64.9
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 1.2e-172 610.5 530 60.8
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 2.7e-172 609.4 499 73.5
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 4.6e-172 608.6 537 69.5
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 6.0e-172 608.2 538 60.2
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 1.7e-171 606.7 537 61.6
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 3.9e-171 605.5 527 68.7
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 7.3e-170 601.3 553 68.0
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 9.6e-170 600.9 534 60.5
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.6e-169 600.1 553 68.0
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.6e-169 600.1 553 68.0
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 2.8e-169 599.4 537 60.5
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 1.4e-168 597.0 541 67.8
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 1.4e-168 597.0 532 67.5
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 1.8e-168 596.7 532 67.5
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 4.0e-168 595.5 537 67.2
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 5.2e-168 595.1 537 67.2
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 2.6e-167 592.8 534 68.0
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 2.6e-167 592.8 532 58.6
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 4.4e-167 592.0 537 59.8
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 4.4e-167 592.0 533 58.2
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 8.4e-166 587.8 538 66.2
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 1.1e-165 587.4 525 67.4
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 1.1e-165 587.4 530 67.4
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 1.1e-165 587.4 530 67.4
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.9e-165 586.6 553 67.6
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 4.2e-165 585.5 533 66.6
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 5.4e-165 585.1 524 66.8
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 1.7e-163 580.1 526 59.5
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 1.7e-163 580.1 526 59.5
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 3.0e-163 579.3 529 57.3
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 1.5e-162 577.0 526 58.9
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 1.3e-161 573.9 529 58.2
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 1.3e-161 573.9 529 58.2
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.3e-158 563.9 528 67.6
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 1.7e-158 563.5 531 56.3
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 1.7e-158 563.5 536 53.7
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 2.2e-158 563.1 537 55.9
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 6.4e-158 561.6 539 64.7
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 1.4e-157 560.5 534 57.3
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 1.9e-157 560.1 534 55.6
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 3.2e-157 559.3 539 64.7
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 4.2e-157 558.9 535 58.7
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 1.6e-156 557.0 535 65.0
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 1.6e-153 547.0 544 56.1
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 1.6e-153 547.0 537 54.4
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 6.2e-153 545.0 537 56.8
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 3.1e-152 542.7 531 54.8
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 5.3e-152 542.0 532 54.7
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 9.0e-152 541.2 535 54.6
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 2.0e-151 540.0 533 56.8
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 1.2e-148 530.8 532 53.4
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 1.3e-147 527.3 542 61.4
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 2.3e-147 526.6 525 62.1
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 1.1e-146 524.2 532 52.6
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 1.9e-146 523.5 529 62.0
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 1.6e-145 520.4 532 52.1
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 3.7e-145 519.2 531 52.7
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 1.1e-144 517.7 532 52.6
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 3.1e-144 516.2 538 61.3
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 4.0e-144 515.8 530 61.9
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 1.5e-143 513.8 530 61.7
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 9.4e-133 478.0 528 59.5
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 3.6e-132 476.1 525 51.0
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 6.1e-132 475.3 535 60.0
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 1.0e-131 474.6 459 64.5
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 1.8e-123 447.2 326 66.9
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 1.3e-118 431.0 527 46.5
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 1.9e-117 427.2 533 46.3
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 6.7e-115 418.7 524 48.7
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 2.4e-112 410.2 527 45.2
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 2.6e-106 390.2 539 44.0
Sc17g0005180 Simmondsia chinensis HOM05D005544 ORTHO05D007303 1.8e-91 340.9 394 60.2
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 2.0e-87 327.4 523 46.1
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 5.8e-82 309.3 533 45.0
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 1.7e-81 307.8 522 39.8
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 2.7e-79 300.4 274 54.7
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 5.0e-78 296.2 527 47.1
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 1.9e-72 277.7 398 42.2
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 3.2e-72 276.9 331 44.1
Cre03.g196850 Chlamydomonas reinhardtii HOM05D005544 ORTHO05D007303 8.3e-65 252.3 505 34.7
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.2e-63 248.4 307 47.9
PRCOL_00005139 Prasinoderma coloniale HOM05D005544 ORTHO05D007303 8.7e-54 215.7 530 29.8
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 4.3e-53 213.4 404 33.4
PGSC0003DMG400036093 Solanum tuberosum HOM05D005544 ORTHO05D007303 2.9e-49 200.7 101 96.0
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 4.8e-44 183.3 223 48.0
Hma1.2p1_3416F.1_g335940 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.1e-43 182.2 307 38.8
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 1.8e-38 164.9 179 51.4
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 2.9e-33 147.5 240 41.2
Cfa022606 Carpinus fangiana HOM05D005544 ORTHO05D007303 1.4e-32 145.2 498 28.7
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 1.9e-29 134.8 120 60.8
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 3.7e-28 130.6 129 56.6
Sc17g0005170 Simmondsia chinensis HOM05D005544 ORTHO05D007303 6.2e-28 129.8 102 64.7
C04p71990 Brassica napus HOM05D002853 ORTHO05D003030 1.4e-27 128.6 108 55.6
BolC7t40575H Brassica oleracea HOM05D005544 ORTHO05D027614 2.5e-24 117.9 158 46.8
CAN.G111.2 Capsicum annuum HOM05D000002 ORTHO05D000001 2.7e-23 114.4 74 77.0
A07p00730 Brassica napus HOM05D005544 ORTHO05D027614 3.3e-21 107.5 158 44.3
CAN.G708.1 Capsicum annuum HOM05D005544 ORTHO05D027614 3.3e-21 107.5 75 77.3
SGA_v2.0_scaffold175G39332 Striga asiatica HOM05D005544 ORTHO05D007303 3.2e-16 90.9 130 49.2
SGA_v2.0_scaffold419G51287 Striga asiatica HOM05D005544 ORTHO05D007303 4.2e-16 90.5 97 55.7
Nn3g19125 Nelumbo nucifera HOM05D005544 ORTHO05D007303 5.5e-16 90.1 60 68.3
SGA_v2.0_scaffold45G17255 Striga asiatica HOM05D005544 ORTHO05D007303 3.3e-13 80.9 101 50.5
SEGI_41146 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 6.5e-09 66.6 70 45.7


User provided reference genes

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