Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400040134 Solanum tuberosum HOM05D003084 ORTHO05D003580 2.4e-102 375.6 196 100.0
Sopen10g031790 Solanum pennellii HOM05D003084 ORTHO05D003580 2.5e-43 179.5 184 50.5
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 2.1e-37 159.8 162 53.7
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 2.1e-37 159.8 162 53.1
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 2.1e-37 159.8 162 53.1
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 2.1e-37 159.8 162 53.1
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 2.1e-37 159.8 162 53.1
ATR0307G103 Amborella trichopoda HOM05D003084 ORTHO05D003580 2.7e-37 159.5 162 53.1
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 2.7e-37 159.5 162 53.1
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 2.7e-37 159.5 162 53.1
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 2.7e-37 159.5 162 53.1
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 2.7e-37 159.5 162 53.1
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 2.7e-37 159.5 162 53.1
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 2.7e-37 159.5 162 53.1
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 4.6e-37 158.7 155 54.2
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 4.6e-37 158.7 155 54.2
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 4.6e-37 158.7 155 54.2
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 4.6e-37 158.7 155 54.2
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 4.6e-37 158.7 155 54.2
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 4.6e-37 158.7 155 54.2
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 4.6e-37 158.7 155 54.2
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 4.6e-37 158.7 155 54.2
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 4.6e-37 158.7 155 54.2
Atru.chr2.3187 Acer truncatum HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Atru.chr2.3199 Acer truncatum HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Atru.chr7.2125 Acer truncatum HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Actinidia38789 Actinidia chinensis HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 6.0e-37 158.3 162 52.5
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.8
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
FAN15G1682 Fragaria x ananassa HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 6.0e-37 158.3 155 54.2
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 7.9e-37 157.9 162 52.5
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 7.9e-37 157.9 162 52.5
BcaB04g19963 Brassica carinata HOM05D003084 ORTHO05D003580 7.9e-37 157.9 162 52.5
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 7.9e-37 157.9 162 52.5
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 7.9e-37 157.9 162 52.5
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 7.9e-37 157.9 162 52.5
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 7.9e-37 157.9 162 52.5
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 7.9e-37 157.9 162 52.5
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 7.9e-37 157.9 162 52.5
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 7.9e-37 157.9 162 52.5
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 7.9e-37 157.9 162 52.5
Nn4g23295 Nelumbo nucifera HOM05D003084 ORTHO05D003580 7.9e-37 157.9 162 52.5
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 7.9e-37 157.9 162 52.5
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 7.9e-37 157.9 162 52.5
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 7.9e-37 157.9 162 52.5
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 7.9e-37 157.9 162 52.5
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 1.0e-36 157.5 155 54.2
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 1.0e-36 157.5 155 54.2
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 1.0e-36 157.5 155 54.2
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 1.0e-36 157.5 155 54.2
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 1.0e-36 157.5 155 54.2
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 1.3e-36 157.1 155 53.5
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 1.3e-36 157.1 155 53.5
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 1.3e-36 157.1 155 53.5
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 1.3e-36 157.1 155 53.5
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 1.3e-36 157.1 155 53.5
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 1.3e-36 157.1 155 53.5
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 1.3e-36 157.1 155 53.5
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 1.8e-36 156.8 162 51.9
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 1.8e-36 156.8 162 51.9
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 1.8e-36 156.8 162 51.9
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 1.8e-36 156.8 162 51.9
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.8e-36 156.8 162 51.9
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.8e-36 156.8 162 51.9
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.8e-36 156.8 162 51.9
Migut.D02560 Erythranthe guttata HOM05D003084 ORTHO05D003580 1.8e-36 156.8 155 53.5
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 1.8e-36 156.8 162 51.9
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 1.8e-36 156.8 162 51.9
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 1.8e-36 156.8 162 51.9
HPP92_010359 Vanilla planifolia HOM05D003084 ORTHO05D003580 1.8e-36 156.8 162 52.5
Glyma.13G229200 Glycine max HOM05D003084 ORTHO05D003580 2.3e-36 156.4 162 51.9
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 2.3e-36 156.4 162 51.9
ATR0618G293 Amborella trichopoda HOM05D003084 ORTHO05D003580 3.0e-36 156.0 162 51.9
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 3.0e-36 156.0 155 52.9
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 3.0e-36 156.0 162 51.9
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 3.0e-36 156.0 162 51.9
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 3.0e-36 156.0 162 51.9
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 3.0e-36 156.0 155 52.9
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 3.9e-36 155.6 155 53.5
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 5.1e-36 155.2 162 51.2
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 6.7e-36 154.8 162 51.9
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 8.7e-36 154.5 162 51.9
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 1.1e-35 154.1 155 52.3
Os02g0478900 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 1.1e-35 154.1 155 52.9
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 1.5e-35 153.7 162 50.6
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 1.5e-35 153.7 162 50.6
HPP92_010380 Vanilla planifolia HOM05D003084 ORTHO05D003580 1.5e-35 153.7 163 52.8
DCAR_026292 Daucus carota HOM05D003084 ORTHO05D003580 1.9e-35 153.3 155 52.9
MCO09G793 Micromonas commoda HOM05D003084 ORTHO05D003580 1.9e-35 153.3 155 52.3
Cre12.g494100 Chlamydomonas reinhardtii HOM05D003084 ORTHO05D003580 7.4e-35 151.4 154 50.6
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 2.1e-34 149.8 162 48.8
Carub.0013s0010 Capsella rubella HOM05D003084 ORTHO05D003580 4.8e-34 148.7 155 51.6
PRCOL_00002641 Prasinoderma coloniale HOM05D003084 ORTHO05D003580 4.8e-34 148.7 162 48.8
DCAR_017867 Daucus carota HOM05D003084 ORTHO05D003580 6.2e-34 148.3 155 50.3
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 6.2e-34 148.3 172 47.7
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 6.9e-33 144.8 140 57.1
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 1.2e-32 144.1 155 50.3
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 2.6e-32 142.9 190 45.8
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 9.9e-32 141.0 154 48.1
Cfa022297 Carpinus fangiana HOM05D003084 ORTHO05D003580 1.3e-31 140.6 154 48.1
Haze_26699 Corylus avellana HOM05D003084 ORTHO05D003580 2.2e-31 139.8 155 48.4
FvH4_3g24440 Fragaria vesca HOM05D003084 ORTHO05D003580 2.9e-31 139.4 155 47.1
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 3.8e-31 139.0 162 49.4
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 6.4e-31 138.3 154 47.4
FAN11G1592 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.1e-30 137.5 155 46.5
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 4.2e-30 135.6 161 47.2
Peaxi162Scf00541g00066 Petunia axillaris HOM05D003084 ORTHO05D003580 4.2e-30 135.6 177 45.2
Solyc10g081290.2 Solanum lycopersicum HOM05D003084 ORTHO05D003580 5.5e-30 135.2 142 51.4
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 7.1e-30 134.8 131 57.3
CAN.G128.99 Capsicum annuum HOM05D003084 ORTHO05D003580 9.3e-30 134.4 162 45.7
RcHm_v2.0_Chr5g0043941 Rosa chinensis HOM05D003084 ORTHO05D003580 1.2e-29 134.0 155 45.2
HPP92_019915 Vanilla planifolia HOM05D003084 ORTHO05D003580 3.1e-25 119.4 117 56.4
HPP92_010409 Vanilla planifolia HOM05D003084 ORTHO05D003580 5.3e-25 118.6 118 57.6
CSS0044491 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 2.6e-24 116.3 155 46.5
FAN21G2367 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.0e-23 114.4 204 34.8
GSVIVG01025852001 Vitis vinifera HOM05D003084 ORTHO05D003580 1.5e-19 100.5 118 51.7
Peaxi162Scf00920g00062 Petunia axillaris HOM05D003084 ORTHO05D003580 1.4e-12 77.4 185 33.5
DCAR_028101 Daucus carota HOM05D003084 ORTHO05D003580 8.8e-12 74.7 87 47.1
TPR.G10901 Trifolium pratense HOM05D003084 ORTHO05D003580 3.3e-11 72.8 102 43.1
MD12G1233800 Malus domestica HOM05D003084 ORTHO05D003580 1.5e-08 63.9 70 50.0
Actinidia17683 Actinidia chinensis HOM05D003084 ORTHO05D003580 2.0e-08 63.5 103 35.9
DCAR_024485 Daucus carota HOM05D003084 ORTHO05D003580 2.9e-07 59.7 83 42.2


User provided reference genes

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