Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1827.8 954 100.0
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1758.8 954 95.8
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1757.3 954 95.8
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1701.0 954 92.2
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1679.1 954 92.0
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1659.8 954 91.4
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1637.5 977 88.5
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1370.1 967 74.7
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1357.8 980 73.1
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1354.0 990 73.2
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1351.3 980 74.4
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1333.5 978 72.2
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1332.0 978 72.2
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1308.9 976 72.3
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1307.0 971 73.4
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1303.9 1012 69.3
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1295.4 1163 63.3
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1290.8 965 71.5
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1283.9 990 70.1
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1280.4 968 71.3
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1280.4 994 69.4
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1277.7 986 69.9
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1270.8 997 69.6
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1269.6 975 70.4
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1269.2 992 69.2
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1262.7 995 68.5
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1261.9 996 68.0
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1257.3 992 68.9
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1256.1 993 67.8
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1253.0 970 69.0
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1253.0 970 69.0
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1249.2 997 68.4
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1249.2 1048 64.8
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1246.9 1033 65.3
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1242.6 1031 66.3
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1240.3 992 67.1
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1239.9 1035 65.1
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1238.4 964 70.0
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1237.6 1000 67.9
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1236.5 985 68.6
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1235.3 1034 64.5
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1234.6 978 69.4
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1233.0 1048 65.7
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1232.2 1018 66.8
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1231.9 1007 67.0
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1229.9 1071 64.8
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1224.2 1048 65.8
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1223.4 1024 65.2
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1220.7 994 67.5
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1219.9 968 67.1
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1219.1 994 66.7
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1217.6 1036 65.6
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1217.2 1055 64.7
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1216.8 978 67.9
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1216.4 986 67.5
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1212.6 986 66.8
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1212.6 973 67.5
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1212.2 1044 65.2
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1210.7 979 67.4
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1208.4 960 67.7
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1205.7 968 67.1
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1205.7 968 67.1
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1204.5 968 67.1
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1203.3 977 67.5
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1198.3 968 67.1
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1197.6 968 66.7
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1197.2 967 66.9
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1194.1 972 67.2
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1193.3 971 66.6
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1191.4 966 66.6
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1191.4 964 66.9
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1190.3 971 66.3
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1190.3 985 66.4
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1189.5 963 67.1
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1185.2 969 66.6
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1180.2 979 66.3
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1179.1 993 63.8
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 0.0e+00 1178.3 827 76.8
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1167.9 970 65.3
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 0.0e+00 1163.7 846 74.1
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1129.8 983 64.3
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 0.0e+00 1117.4 978 64.1
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 0.0e+00 1112.8 991 59.9
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 0.0e+00 1107.8 989 61.8
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 0.0e+00 1088.2 998 60.0
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1084.3 907 66.3
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 0.0e+00 1083.9 1003 60.4
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 0.0e+00 1078.5 955 65.0
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 1.9e-309 1065.8 821 69.9
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 4.3e-306 1054.7 885 66.8
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 2.6e-274 949.1 1020 52.5
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 1.7e-270 936.4 1072 50.3
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 1.4e-264 916.8 1063 49.9
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 1.3e-257 893.6 980 51.3
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 2.4e-256 889.4 994 52.7
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 2.3e-246 856.3 764 63.0
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 3.3e-245 852.4 709 65.9
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 1.1e-219 767.7 786 58.0
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 1.4e-211 740.7 917 49.7
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 1.1e-208 731.1 595 67.4
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 1.9e-208 730.3 607 65.1
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 4.3e-189 666.0 548 66.2
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 7.7e-178 628.6 597 60.6
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 7.2e-168 595.5 558 59.5
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 3.0e-158 563.5 959 35.5
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 3.0e-134 483.8 358 66.8
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 5.9e-130 469.5 396 62.4
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 1.6e-127 461.5 972 34.1
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.1e-127 459.5 305 73.4
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 7.5e-125 452.6 278 83.5
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 1.9e-123 448.0 269 84.8
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 1.5e-120 438.3 377 61.8
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 1.5e-117 428.3 277 79.4
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 1.5e-112 411.8 934 32.9
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 1.5e-109 401.7 1307 28.9
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 7.6e-109 399.4 297 69.0
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 2.5e-104 384.4 367 56.1
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 3.5e-98 364.0 352 53.7
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 7.4e-80 303.1 184 81.0
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.7e-79 300.8 287 55.4
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 3.2e-75 287.7 226 66.4
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.9e-70 270.0 176 74.4
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 7.6e-69 266.5 145 91.7
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.2e-68 265.0 247 58.7
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.5e-59 233.8 144 78.5
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 1.2e-58 232.6 185 64.3
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 5.1e-57 227.3 150 75.3
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.3e-54 217.2 194 60.3
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.5e-51 207.2 130 76.9
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.1e-48 199.5 130 74.6
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 9.7e-48 196.4 105 92.4
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.3e-46 190.7 131 71.8
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 7.0e-46 190.3 214 54.2
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 1.0e-44 186.4 161 62.1
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 2.9e-44 184.9 221 52.9
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 5.2e-41 174.1 98 85.7
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 1.3e-36 159.5 121 70.2
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.5e-35 156.0 101 74.3
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.7e-28 132.5 85 72.9
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 4.2e-27 127.9 212 42.0
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 4.7e-26 124.4 85 68.2
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 3.4e-24 118.2 139 51.1
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 2.8e-23 115.2 170 38.8
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 4.9e-15 87.8 42 97.6
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 4.4e-08 64.7 45 75.6
AagrBONN_evm.TU.Sc2ySwM_362.221 Anthoceros agrestis HOM05D001887 ORTHO05D070959 2.4e-06 58.9 59 45.8


User provided reference genes

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